Rmu_sc0004009.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004009.1
OG0019377
Physical Location & Seq
Reverse (-)
8559 .. 10017
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004009.1_g000004.1.cds

Sequence Viewer

Length: 525 bp
atgattttggctaagtacgatggagtaggttcagtggagactattcctcttagatcgattgagacttgggttgcggtgaaaggtctggcccttgcactgcttaacaaggtggctctgtcacttgttggttcttccatagggagggttataagatttgatcaagatgctcttcatcgtaaggaggcagaacgaaaaatccgtttggaactcgatatccttcatagggagaaagaagagtatttggcccaaccgccggagggagcgatggccagtatggctttatttactcaggctgcatcattgggattggggtgggggggggggggtggcgagtctaggggtctacttgtgggaattcccactttattggagcatattggtgctgacctgcgtgcggcgtgctttttgaagggttgggttccggttgcccttctaacgactggtgcacatccctcaggtggtggatctgccattggcggtggtgccatctgggacgactatggatgtcggagaaccaaactctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

174

Amino Acids

18.38

Weight (kDa)

7.82

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 482
AccI GTMKAC 1 cut(s) 343
AciI CCGC 4 cut(s) 74, 251, 395, 477
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 354
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 6 cut(s) 141, 223, 253, 257, 394, 458
AgsI TTSAA 1 cut(s) 409
AloI GAACNNNNNNTCC 4 cut(s) 180, 198, 212, 230
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 32, 56
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 1 cut(s) 472
AoxI GGCC 3 cut(s) 87, 243, 267
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 88, 244
AsuHPI GGTGA 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 448
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 280
BccI CCATC 3 cut(s) 14, 259, 494
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 32, 56
BfaI CTAG 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 2 cut(s) 294, 396
BlsI GCNGC 2 cut(s) 295, 397
BmgT120I GGNCC 2 cut(s) 88, 244
BmiI GGNNCC 2 cut(s) 420, 484
BmsI GCATC 2 cut(s) 154, 305
Bsa29I ATCGAT 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 6 cut(s) 141, 223, 253, 257, 394, 458
Bse1I ACTGG 2 cut(s) 270, 445
Bse21I CCTNAGG 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 56
BseGI GGATG 2 cut(s) 448, 509
BseLI CCNNNNNNNGG 6 cut(s) 141, 223, 253, 257, 394, 458
BseMII CTCAG 2 cut(s) 302, 468
BseNI ACTGG 2 cut(s) 270, 445
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 3 cut(s) 89, 245, 269
BshNI GGYRCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 2 cut(s) 254, 422
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 6 cut(s) 141, 223, 253, 257, 394, 458
BsmAI GTCTC 2 cut(s) 32, 56
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 3 cut(s) 89, 245, 269
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 53, 157, 464
BspACI CCGC 4 cut(s) 74, 251, 395, 477
BspANI GGCC 3 cut(s) 89, 245, 269
BspCNI CTCAG 2 cut(s) 301, 467
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 420, 484
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 482
BsrI ACTGG 2 cut(s) 270, 445
BssMI GATC 3 cut(s) 53, 157, 464
Bst6I CTCTTC 2 cut(s) 174, 228
BstC8I GCNNGC 2 cut(s) 393, 400
BstDEI CTNAG 4 cut(s) 12, 50, 288, 454
BstF5I GGATG 2 cut(s) 448, 509
BstKTI GATC 3 cut(s) 56, 160, 467
BstMAI GTCTC 2 cut(s) 32, 56
BstMBI GATC 3 cut(s) 53, 157, 464
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 464
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 464
Bsu15I ATCGAT 1 cut(s) 56
Bsu36I CCTNAGG 1 cut(s) 454
BsuRI GGCC 3 cut(s) 89, 245, 269
BsuTUI ATCGAT 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 2 cut(s) 448, 509
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 39, 95
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 393, 400
Cfr13I GGNCC 2 cut(s) 88, 244
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 7 cut(s) 11, 89, 113, 245, 269, 278, 293
CviKI_1 RGCY 7 cut(s) 11, 89, 113, 245, 269, 278, 293
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 4 cut(s) 12, 50, 288, 454
DpnI GATC 3 cut(s) 55, 159, 466
DpnII GATC 3 cut(s) 53, 157, 464
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 174, 228
EarI CTCTTC 2 cut(s) 174, 228
Eco32I GATATC 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 354
EcoRV GATATC 1 cut(s) 214
FaiI YATR 6 cut(s) 137, 149, 222, 275, 375, 501
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 506
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 294, 396
FokI GGATG 2 cut(s) 435, 516
Fsp4HI GCNGC 2 cut(s) 294, 396
FspBI CTAG 1 cut(s) 336
GluI GCNGC 2 cut(s) 294, 396
HaeIII GGCC 3 cut(s) 89, 245, 269
HapII CCGG 2 cut(s) 254, 422
HinfI GANTC 1 cut(s) 332
HpaII CCGG 2 cut(s) 254, 422
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 344, 446
Hpy188I TCNGA 2 cut(s) 510, 524
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 344, 446
HpyAV CCTTC 3 cut(s) 227, 403, 440
HpyCH4V TGCA 3 cut(s) 95, 296, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 4 cut(s) 12, 50, 288, 454
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 53, 157, 464
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 260, 370
LpnPI CCDG 9 cut(s) 71, 267, 275, 283, 401, 426, 435, 441, 475
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 154, 305
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 117
MalI GATC 3 cut(s) 55, 159, 466
MboI GATC 3 cut(s) 53, 157, 464
MboII GAAGA 3 cut(s) 123, 161, 245
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 5 cut(s) 57, 135, 175, 250, 463
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 2 cut(s) 254, 422
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 3 cut(s) 53, 157, 464
NlaIV GGNNCC 2 cut(s) 420, 484
NmuCI GTSAC 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 2 cut(s) 295, 397
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PsiI TTATAA 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 420, 484
PspPI GGNCC 2 cut(s) 88, 244
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 294, 396
Sau3AI GATC 3 cut(s) 53, 157, 464
Sau96I GGNCC 2 cut(s) 88, 244
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 448
SetI ASST 5 cut(s) 31, 85, 111, 390, 460
SfaNI GCATC 2 cut(s) 154, 305
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 1 cut(s) 354
SsiI CCGC 4 cut(s) 74, 251, 395, 477
SspMI CTAG 1 cut(s) 336
TaqI TCGA 2 cut(s) 56, 210
TasI AATT 1 cut(s) 354
TauI GCSGC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 39, 102
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 161, 209
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 39, 102
VneI GTGCAC 1 cut(s) 444
XapI RAATTY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 343
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.