Rmu_co8233329.1_g000001

Belongs to the PI3 PI4-kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8233329.1
OG0010181
Physical Location & Seq
Reverse (-)
1 .. 737
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8233329.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
ctggaatcttcagggccttcatattgttggaccgagctgattactctgagtactaagtataatgacttgactggtcactcacagcttgcttttactgtttgggatgtttcgtgtgggaacgatgaagggttgattggtggtgctacgattcttctctttaataacaagaagcaactcaagacggggaagcaaaagctgaggctttggaaaggaaaagtagctgatgggtcatttcctacttcgactcctggaaaggttccccggaatgaacgtggggagttggaacgtttggagaagctagtgaataagtatgagaggggacagatccaatgtgttgattggctggaccgccttgcatttaaagctatggagagaataaaggaacgtgaaagctctaaaaatggaagtttgcatttgtacctggttgtcgatttctctagttttgagcatcgtgttgttttccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000407 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005777 GO:0005942 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006914 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009555 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016236 GO:0016301 GO:0016303 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0019898 GO:0022607 GO:0023052 GO:0030242 GO:0030258 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0034271 GO:0034272 GO:0035004 GO:0035032 GO:0035556 GO:0036092 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0052742 GO:0055046 GO:0061695 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0072593 GO:0090407 GO:0097708 GO:0098657 GO:0098796 GO:1901564 GO:1901576 GO:1902494 GO:1905037 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 ko04136 ko04138 ko04140 ko04145 ko04371 ko05152 ko05167 map00562 map01100 map04070 map04136 map04138 map04140 map04145 map04371 map05152 map05167
Pfam Domains
Protein Families
PI3K_C2 PI3Ka PI3_PI4_kinase

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

8.98

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 349
AclI AACGTT 1 cut(s) 286
AclWI GGATC 1 cut(s) 319
AfaI GTAC 2 cut(s) 52, 419
AjnI CCWGG 2 cut(s) 247, 420
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 7 cut(s) 37, 85, 196, 221, 298, 365, 393
AluI AGCT 7 cut(s) 37, 85, 196, 221, 298, 365, 393
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 14, 30, 346
AsuC2I CCSGG 1 cut(s) 262
AvaII GGWCC 2 cut(s) 30, 346
BbvCI CCTCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 2 cut(s) 249, 422
BcnI CCSGG 1 cut(s) 262
BfaI CTAG 2 cut(s) 299, 438
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 249, 262, 422
Bme18I GGWCC 2 cut(s) 30, 346
BmgT120I GGNCC 3 cut(s) 14, 30, 346
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 249, 262, 422
BmsI GCATC 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 249, 422
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 38, 188
BseNI ACTGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 39, 189
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 249, 422
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 47, 54, 197
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 2 cut(s) 249, 422
BstSCI CCNGG 3 cut(s) 247, 260, 420
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 14, 30, 346
CsiI ACCWGGT 1 cut(s) 420
Csp6I GTAC 2 cut(s) 51, 418
CviQI GTAC 2 cut(s) 51, 418
DdeI CTNAG 3 cut(s) 47, 54, 197
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
DraI TTTAAA 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 30, 346
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 2 cut(s) 247, 420
FaiI YATR 4 cut(s) 22, 60, 312, 368
FaqI GGGAC 1 cut(s) 333
FokI GGATG 1 cut(s) 116
FspBI CTAG 2 cut(s) 299, 438
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 262
HinfI GANTC 3 cut(s) 5, 148, 244
HpaII CCGG 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 27, 119
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 271, 286, 385
HpyCH4V TGCA 2 cut(s) 356, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 3 cut(s) 47, 54, 197
HpySE526I ACGT 3 cut(s) 271, 286, 385
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 7 cut(s) 57, 234, 261, 275, 329, 407, 434
LweI GCATC 1 cut(s) 457
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 2 cut(s) 299, 438
MaeII ACGT 3 cut(s) 271, 286, 385
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 324
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 2 cut(s) 8, 261
MnlI CCTC 2 cut(s) 192, 309
MseI TTAA 2 cut(s) 159, 360
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 249, 262, 422
MvaI CCWGG 2 cut(s) 249, 422
MwoI GCNNNNNNNGC 1 cut(s) 362
NciI CCSGG 1 cut(s) 262
NdeII GATC 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 5, 148
PfoI TCCNGGA 1 cut(s) 247
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 247, 420
PspGI CCWGG 2 cut(s) 247, 420
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 14, 30, 346
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 2 cut(s) 52, 419
RsaNI GTAC 2 cut(s) 51, 418
SaqAI TTAA 2 cut(s) 159, 360
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 3 cut(s) 14, 30, 346
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 3 cut(s) 249, 262, 422
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 2 cut(s) 30, 346
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 1 cut(s) 349
SspMI CTAG 2 cut(s) 299, 438
StyD4I CCNGG 3 cut(s) 247, 260, 420
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 3 cut(s) 274, 289, 388
TaqI TCGA 2 cut(s) 242, 429
TaqII GACCGA 1 cut(s) 47
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 5, 148
Tru1I TTAA 2 cut(s) 159, 360
Tru9I TTAA 2 cut(s) 159, 360
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 9, 138, 282
VpaK11BI GGWCC 2 cut(s) 30, 346
XspI CTAG 2 cut(s) 299, 438
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.