Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033917.1

Orthogroup ID

OG0010181

Physical Location & Seq

Genomic Coordinates Reverse (-)

71 .. 379

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atgagcgggaacgagttccgcttcttcttgtcctgcgacatcaatctcccactcacctttcggatcgagcggcttgaaggagctctgagccggcccaagtccacaacctccgatgttgatccaactccggcgacggaggagagaagagcagagctgtatgtggagtgcgcattgtacattgatggcgctccgtttggcttgcccacacggacaaggttttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005777 GO:0005942 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006914 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009555 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016236 GO:0016301 GO:0016303 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0019898 GO:0022607 GO:0023052 GO:0030242 GO:0030258 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0034271 GO:0034272 GO:0035004 GO:0035032 GO:0035556 GO:0036092 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0052742 GO:0055046 GO:0061695 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0072593 GO:0090407 GO:0097708 GO:0098657 GO:0098796 GO:1901564 GO:1901576 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 ko04136 ko04138 ko04140 ko04145 ko04371 ko05152 ko05167 map00562 map01100 map04070 map04136 map04138 map04140 map04145 map04371 map05152 map05167

Pfam Domains

Protein Families

PI3K_C2 PI3Ka PI3_PI4_kinase

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

4.99

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60490
fragaria_vesca	FvH4_4g34140 FvH4_4g34140 FvH4_4g34140 FvH4_4g34140
malus_domestica	MD13G1093900.v1.1 MD16G1095200.v1.1
prunus_persica	Prupe.1G251400_v2.0.a1 Prupe.1G251400_v2.0.a1
pyrus_communis	pycom13g08180
rosa_chinensis	RchiOBHm_Chr4g0443651
rosa_laevigata	RLG00000005905
rosa_multiflora	Rmu_co8233329.1_g000001 Rmu_sc0033917.1_g000001 Rmu_sc0039932.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384200
rosa_samantha	Rh4AG405900 Rh4BG416900 Rh4CG431400 Rh4DG412600
rosa_wichuraiana	Rw4G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	169
AccBSI	CCGCTC	2 cut(s)	6, 70
AciI	CCGC	3 cut(s)	6, 19, 70
AclWI	GGATC	2 cut(s)	71, 113
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	2 cut(s)	83, 154
AluI	AGCT	2 cut(s)	83, 154
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	71, 113
AoxI	GGCC	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	170, 188
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	91, 128
BsnI	GGCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	63, 118
BspACI	CCGC	3 cut(s)	6, 19, 70
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	78
BspPI	GGATC	2 cut(s)	71, 113
BspQI	GCTCTTC	1 cut(s)	139
BsrBI	CCGCTC	2 cut(s)	6, 70
BsrFI	RCCGGY	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	90
BssMI	GATC	2 cut(s)	63, 118
Bst6I	CTCTTC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	92, 200
BstDEI	CTNAG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	170, 188
BstKTI	GATC	2 cut(s)	66, 121
BstMBI	GATC	2 cut(s)	63, 118
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	92, 200
CfoI	GCGC	2 cut(s)	170, 188
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	6 cut(s)	73, 83, 90, 94, 154, 198
CviKI_1	RGCY	6 cut(s)	73, 83, 90, 94, 154, 198
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	65, 120
DpnII	GATC	2 cut(s)	63, 118
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	85
FaiI	YATR	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	71
FspAI	RTGCGCAY	1 cut(s)	169
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	2 cut(s)	169, 187
GluI	GCNGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	2 cut(s)	91, 128
HhaI	GCGC	2 cut(s)	170, 188
Hin6I	GCGC	2 cut(s)	168, 186
HinP1I	GCGC	2 cut(s)	168, 186
HpaII	CCGG	2 cut(s)	91, 128
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	3 cut(s)	63, 87, 112
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	86
HspAI	GCGC	2 cut(s)	168, 186
KroI	GCCGGC	1 cut(s)	90
KroNI	GCCGGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	63, 118
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	80, 193
LpnPI	CCDG	3 cut(s)	46, 104, 141
MalI	GATC	2 cut(s)	65, 120
MbiI	CCGCTC	2 cut(s)	6, 70
MboI	GATC	2 cut(s)	63, 118
MboII	GAAGA	2 cut(s)	16, 156
MhlI	GDGCHC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	118, 130
MroNI	GCCGGC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	14
MspI	CCGG	2 cut(s)	91, 128
NaeI	GCCGGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	63, 118
NgoMIV	GCCGGC	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	139
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	63, 118
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	5 cut(s)	59, 85, 110, 156, 218
SsiI	CCGC	3 cut(s)	6, 19, 70
SstI	GAGCTC	1 cut(s)	85
TaqI	TCGA	1 cut(s)	66
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	73
TspGWI	ACGGA	3 cut(s)	149, 180, 223
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.