Rmu_co8248297.1_g000001

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8248297.1
OG0018812
Physical Location & Seq
Reverse (-)
96 .. 755
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8248297.1_g000001.1.cds

Sequence Viewer

Length: 660 bp
atgcttactgaaaaaggaggtcatcagcctcctaccaaaataaatataacgatagcactgcgttggcttgtgcaagattgtcaagcaggggattcgttggtgttttattttgccggtcatggtgatcaacagcccgacaacacaggagacgaggtggacgaactagacgagacacttttgcccttagactacgagactaagggagtgatcgttgatgatgagatcaatgaaatgattgtccgacctattccggccggtgtcaagctccatgctattgtggatgcttgccacagtggtactgttcttgatttgccatttctctgcaaaatagacaaaagcggccagaggtggttctggaaggaccatagacgacctcaaaaagctggtgtttggaaaggaacgaaaggtggagaggtcatttcctttagtggatgtaatgatcatcagtgtgctgtagagaaaacaatcccacggggtgccatgacttgggctttcatcgatgccattgatcgtgggtgtggaaatacatatggcaacttgttaattgcaatgcaatctaccgtccttaaggattgtattgatacggattccgccatacaagaaccacaactaacttcaagtgaagtatttgatgtgttcacaaggcctttctcactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

219

Amino Acids

24.24

Weight (kDa)

4.82

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018812)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07290
rosa_chinensis RchiOBHm_Chr5g0011711
rosa_laevigata RLG00000031857
rosa_multiflora Rmu_co8248297.1_g000001 Rmu_sc0007176.1_g000004
rosa_roxburghii Rroxscaffold_1G00064810
rosa_rugosa Rorug04G0458600
rosa_samantha Rh5DG085800
rosa_wichuraiana Rw5G007870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 486
AciI CCGC 2 cut(s) 339, 591
AcoI YGGCCR 2 cut(s) 252, 340
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 486
AflII CTTAAG 1 cut(s) 566
AgsI TTSAA 1 cut(s) 618
AluBI AGCT 2 cut(s) 265, 383
AluI AGCT 2 cut(s) 265, 383
Alw26I GTCTC 3 cut(s) 141, 164, 188
AoxI GGCC 3 cut(s) 252, 340, 644
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 476
BcgI CGANNNNNNTGC 4 cut(s) 40, 74, 75, 109
BclI TGATCA 2 cut(s) 124, 439
BcoDI GTCTC 3 cut(s) 141, 164, 188
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 2 cut(s) 453, 656
BfrI CTTAAG 1 cut(s) 566
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 478
BmsI GCATC 2 cut(s) 271, 490
Bsa29I ATCGAT 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 470
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse118I RCCGGY 2 cut(s) 113, 254
Bse3DI GCAATG 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 2 cut(s) 286, 437
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMI GCAATG 1 cut(s) 555
BseX3I CGGCCG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 254, 342, 646
BshNI GGYRCC 1 cut(s) 476
BshVI ATCGAT 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 3 cut(s) 114, 251, 255
BslI CCNNNNNNNGG 1 cut(s) 486
BsmAI GTCTC 3 cut(s) 141, 164, 188
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 3 cut(s) 254, 342, 646
Bsp143I GATC 5 cut(s) 124, 207, 222, 439, 508
BspACI CCGC 2 cut(s) 339, 591
BspANI GGCC 3 cut(s) 254, 342, 646
BspDI ATCGAT 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 476
BspTI CTTAAG 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 113, 254
BssAI RCCGGY 2 cut(s) 113, 254
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 5 cut(s) 124, 207, 222, 439, 508
Bst4CI ACNGT 3 cut(s) 293, 301, 562
BstAFI CTTAAG 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 184, 198
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 2 cut(s) 286, 437
BstKTI GATC 5 cut(s) 127, 210, 225, 442, 511
BstMAI GTCTC 3 cut(s) 141, 164, 188
BstMBI GATC 5 cut(s) 124, 207, 222, 439, 508
BstMCI CGRYCG 1 cut(s) 255
BstSFI CTRYAG 2 cut(s) 453, 656
BstZI CGGCCG 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 498
BsuRI GGCC 3 cut(s) 254, 342, 646
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 2 cut(s) 286, 437
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 3 cut(s) 56, 298, 452
Cac8I GCNNGC 1 cut(s) 286
Cfr10I RCCGGY 2 cut(s) 113, 254
Cfr13I GGNCC 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 498
Csp6I GTAC 1 cut(s) 297
CviAII CATG 3 cut(s) 119, 269, 481
CviJI RGCY 9 cut(s) 28, 67, 133, 254, 265, 342, 383, 491, 646
CviKI_1 RGCY 9 cut(s) 28, 67, 133, 254, 265, 342, 383, 491, 646
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 2 cut(s) 184, 198
DpnI GATC 5 cut(s) 126, 209, 224, 441, 510
DpnII GATC 5 cut(s) 124, 207, 222, 439, 508
DraIII CACNNNGTG 1 cut(s) 476
EaeI YGGCCR 2 cut(s) 252, 340
EagI CGGCCG 1 cut(s) 252
EciI GGCGGA 1 cut(s) 580
EclXI CGGCCG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 3 cut(s) 122, 272, 484
FaiI YATR 9 cut(s) 47, 120, 270, 366, 482, 529, 531, 596, 658
FatI CATG 3 cut(s) 118, 268, 480
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 2 cut(s) 124, 439
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 2 cut(s) 293, 444
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 3 cut(s) 254, 342, 646
HapII CCGG 3 cut(s) 114, 251, 255
Hin1II CATG 3 cut(s) 122, 272, 484
HinfI GANTC 2 cut(s) 92, 587
HpaII CCGG 3 cut(s) 114, 251, 255
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 157, 639
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 305, 355
Hpy8I GTNNAC 2 cut(s) 157, 639
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 3 cut(s) 293, 301, 562
HpyCH4V TGCA 4 cut(s) 73, 324, 548, 553
HpyF3I CTNAG 2 cut(s) 184, 198
Hsp92II CATG 3 cut(s) 122, 272, 484
Ksp22I TGATCA 2 cut(s) 124, 439
Kzo9I GATC 5 cut(s) 124, 207, 222, 439, 508
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 8 cut(s) 72, 127, 129, 264, 268, 340, 356, 369
LweI GCATC 2 cut(s) 271, 490
MaeI CTAG 1 cut(s) 164
MalI GATC 5 cut(s) 126, 209, 224, 441, 510
MboI GATC 5 cut(s) 124, 207, 222, 439, 508
MluCI AATT 1 cut(s) 543
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 6 cut(s) 11, 39, 145, 339, 384, 406
MseI TTAA 2 cut(s) 542, 567
MslI CAYNNNNRTG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 3 cut(s) 114, 251, 255
NdeI CATATG 1 cut(s) 529
NdeII GATC 5 cut(s) 124, 207, 222, 439, 508
NlaIII CATG 3 cut(s) 122, 272, 484
NlaIV GGNNCC 1 cut(s) 478
PceI AGGCCT 1 cut(s) 646
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 165
PfeI GAWTC 2 cut(s) 92, 587
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 1 cut(s) 361
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 2 cut(s) 542, 567
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 5 cut(s) 124, 207, 222, 439, 508
Sau96I GGNCC 1 cut(s) 361
SetI ASST 9 cut(s) 22, 156, 247, 267, 350, 376, 385, 409, 417
SfaNI GCATC 2 cut(s) 271, 490
SfcI CTRYAG 2 cut(s) 453, 656
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 1 cut(s) 543
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 2 cut(s) 339, 591
SspMI CTAG 1 cut(s) 164
StuI AGGCCT 1 cut(s) 646
TaaI ACNGT 3 cut(s) 293, 301, 562
TaqI TCGA 1 cut(s) 498
TasI AATT 1 cut(s) 543
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 2 cut(s) 92, 587
Tru1I TTAA 2 cut(s) 542, 567
Tru9I TTAA 2 cut(s) 542, 567
TscAI CASTG 3 cut(s) 63, 298, 452
TspDTI ATGAA 2 cut(s) 243, 484
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 3 cut(s) 63, 298, 452
Van91I CCANNNNNTGG 1 cut(s) 486
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 361
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.