Rroxscaffold_1G00064810

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018812
Physical Location & Seq
Forward (+)
86614617 .. 86615658
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064810.1

Sequence Viewer

Length: 1005 bp
ATGTTCATGCCTATAAGCTGCTCAAACTGCAACACGTATCTGCAGTTACCTACAGGTTCTCAGATTGTATGCTGCTCCAGATGCATATTGCGCTTTGCCTACTCAAGGTGTCCTCCTCCTCCTCCCCGGTCATACTCCTTCTCCTCTTCCTCCTACAACAACCGCCGTCCTTCCCTGTCATATGCCTTCTCCTTTTTCTCCTACAACAACCGCCCTCCTCCGCCTTCTCGGTTGCCTCGCCAAAGCAAGCGAGCCGTGATATGTGGCATAAATTATAAGGGAATGGGGAAGAAGATGGAGCTCGAGGGCTGCATTAATGATGCGATTGCAATGCAGAATTTGCTGGTCAGGGGGAGTTCAAATTCCCTGCGTCTTCCATTTGCATGCTCACTGAAAAGGAGGTCATCAGCCTCCTACCAAAATAAATATAACGATAGCACTGCGTTGGCTTGTGCAAGATTGTCAAGCAGGGGATTCCCCGACAACACAGGAGACGAGGTGGACGAACTAGACGAGACACTTTTGCCCTTAGACTACGAGACTAAGGGAGTGCTCCTTGATGATGAGATCAATGAAATGATTGTCCGACCTATTCCGGCCGGTGTCAAGCTCCATGCTATTGTGGATGCTTGCCACAGTGGTACTGTTCTTGATTTGCCATTTCTCTGCAACATAGACAAAAGCAGCCAGAGGTGGTTCTGGAAGGACCATAGACGACCTCAAAAAGCTGGTGTTTGGAAAGGAACGAAAGGTGGAGAGGTCATTTCCTTTAGTGGATGTAATGATCATCAGTGTGCTGTAGAGAAAACAATCCCACGGGGTGCCATGACTTGGGCTTTCATCGATGCCATTGATCGTGGGTGTGGAAATACATATGGCAACTTGTTAATTGCAATGCAATCTATCGTCCTTAAGGATTGTATTGATACGGATTCCGCCATACAAGAACCACAACTAACTTCAAGTGAAGTATTTGATGTGTTCACAAGGCCTTTCTCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

334

Amino Acids

37.2

Weight (kDa)

8.54

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 83 - 327 7.9e-19 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018812)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g07290
rosa_chinensis RchiOBHm_Chr5g0011711
rosa_laevigata RLG00000031857
rosa_multiflora Rmu_co8248297.1_g000001 Rmu_sc0007176.1_g000004
rosa_roxburghii Rroxscaffold_1G00064810
rosa_rugosa Rorug04G0458600
rosa_samantha Rh5DG085800
rosa_wichuraiana Rw5G007870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 821
AccB7I CCANNNNNTGG 1 cut(s) 831
AciI CCGC 4 cut(s) 163, 211, 221, 936
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 337, 361
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 2 cut(s) 105, 831
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 360, 963
AluBI AGCT 4 cut(s) 18, 301, 610, 728
AluI AGCT 4 cut(s) 18, 301, 610, 728
Alw21I GWGCWC 2 cut(s) 303, 555
Alw26I GTCTC 3 cut(s) 486, 509, 533
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 2 cut(s) 597, 989
ApeKI GCWGC 4 cut(s) 18, 72, 309, 684
ApoI RAATTY 2 cut(s) 337, 361
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 706
AsuC2I CCSGG 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 706
BanI GGYRCC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 303, 555
BbvI GCAGC 4 cut(s) 5, 59, 296, 696
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 150, 239
BcgI CGANNNNNNTGC 4 cut(s) 313, 347, 422, 456
BclI TGATCA 1 cut(s) 784
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 486, 509, 533
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 4 cut(s) 41, 51, 798, 1001
BfrI CTTAAG 1 cut(s) 911
BisI GCNGC 4 cut(s) 19, 73, 310, 685
BlsI GCNGC 4 cut(s) 20, 74, 311, 686
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 823
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 4 cut(s) 71, 310, 616, 835
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 843
BsaAI YACGTR 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 125, 815
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 831
Bse118I RCCGGY 1 cut(s) 599
Bse3DI GCAATG 2 cut(s) 336, 900
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 125, 815
BseGI GGATG 2 cut(s) 631, 782
BseLI CCNNNNNNNGG 2 cut(s) 105, 831
BseMI GCAATG 2 cut(s) 336, 900
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 5 cut(s) 105, 108, 111, 133, 207
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 4 cut(s) 5, 59, 296, 696
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 2 cut(s) 599, 991
BshNI GGYRCC 1 cut(s) 821
BshVI ATCGAT 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 600
BsiHKAI GWGCWC 2 cut(s) 303, 555
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 3 cut(s) 127, 596, 600
BslI CCNNNNNNNGG 2 cut(s) 105, 831
BsmAI GTCTC 3 cut(s) 486, 509, 533
BsmBI CGTCTC 1 cut(s) 486
BsnI GGCC 2 cut(s) 599, 991
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 303, 555
Bsp143I GATC 3 cut(s) 567, 784, 853
BspACI CCGC 4 cut(s) 163, 211, 221, 936
BspANI GGCC 2 cut(s) 599, 991
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 823
BspMAI CTGCAG 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 821
BspTI CTTAAG 1 cut(s) 911
BsrDI GCAATG 2 cut(s) 336, 900
BsrFI RCCGGY 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 125, 815
BssMI GATC 3 cut(s) 567, 784, 853
Bst4CI ACNGT 2 cut(s) 638, 646
Bst6I CTCTTC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 911
BstAPI GCANNNNNTGC 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 4 cut(s) 248, 252, 385, 631
BstDEI CTNAG 3 cut(s) 60, 529, 543
BstDSI CCRYGG 1 cut(s) 815
BstENI CCTNNNNNAGG 1 cut(s) 103
BstF5I GGATG 2 cut(s) 631, 782
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 3 cut(s) 570, 787, 856
BstMAI GTCTC 3 cut(s) 486, 509, 533
BstMBI GATC 3 cut(s) 567, 784, 853
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 4 cut(s) 27, 81, 90, 340
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 4 cut(s) 41, 51, 798, 1001
BstV1I GCAGC 4 cut(s) 5, 59, 296, 696
BstV2I GAAGAC 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 597
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 2 cut(s) 599, 991
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 1 cut(s) 815
BtsCI GGATG 2 cut(s) 631, 782
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 4 cut(s) 389, 438, 643, 797
Cac8I GCNNGC 4 cut(s) 248, 252, 385, 631
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 706
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 642
CviAII CATG 4 cut(s) 7, 384, 614, 826
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 60, 529, 543
DpnI GATC 3 cut(s) 569, 786, 855
DpnII GATC 3 cut(s) 567, 784, 853
DraIII CACNNNGTG 1 cut(s) 821
EaeI YGGCCR 1 cut(s) 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EciI GGCGGA 2 cut(s) 210, 925
Ecl136II GAGCTC 1 cut(s) 301
EclXI CGGCCG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 991
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 706
Eco52I CGGCCG 1 cut(s) 597
Eco53kI GAGCTC 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 486
FaeI CATG 4 cut(s) 10, 387, 617, 829
FatI CATG 4 cut(s) 6, 383, 613, 825
FauNDI CATATG 2 cut(s) 181, 874
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 4 cut(s) 19, 73, 310, 685
FokI GGATG 2 cut(s) 638, 789
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 4 cut(s) 19, 73, 310, 685
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 19, 73, 310, 685
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 2 cut(s) 599, 991
HapII CCGG 3 cut(s) 127, 596, 600
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 93
Hin1II CATG 4 cut(s) 10, 387, 617, 829
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 2 cut(s) 474, 932
HpaII CCGG 3 cut(s) 127, 596, 600
Hpy166II GTNNAC 2 cut(s) 502, 984
Hpy188I TCNGA 2 cut(s) 63, 587
Hpy188III TCNNGA 3 cut(s) 78, 650, 700
Hpy8I GTNNAC 2 cut(s) 502, 984
HpyAV CCTTC 5 cut(s) 148, 180, 196, 234, 697
HpyCH4III ACNGT 2 cut(s) 638, 646
HpyCH4IV ACGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 81, 90, 340
HpyF3I CTNAG 3 cut(s) 60, 529, 543
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 4 cut(s) 10, 387, 617, 829
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 3 cut(s) 567, 784, 853
LmnI GCTCC 4 cut(s) 80, 298, 558, 615
Lsp1109I GCAGC 4 cut(s) 5, 59, 296, 696
LweI GCATC 4 cut(s) 71, 310, 616, 835
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 45
MalI GATC 3 cut(s) 569, 786, 855
MboI GATC 3 cut(s) 567, 784, 853
MboII GAAGA 4 cut(s) 138, 301, 304, 365
MhlI GDGCHC 2 cut(s) 303, 555
MluCI AATT 4 cut(s) 271, 337, 361, 888
MmeI TCCRAC 1 cut(s) 610
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 3 cut(s) 315, 887, 912
MslI CAYNNNNRTG 2 cut(s) 382, 792
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 3 cut(s) 127, 596, 600
MspR9I CCNGG 1 cut(s) 127
MwoI GCNNNNNNNGC 4 cut(s) 27, 81, 90, 340
NciI CCSGG 1 cut(s) 127
NdeI CATATG 2 cut(s) 181, 874
NdeII GATC 3 cut(s) 567, 784, 853
NlaIII CATG 4 cut(s) 10, 387, 617, 829
NlaIV GGNNCC 1 cut(s) 823
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 302
PceI AGGCCT 1 cut(s) 991
PcsI WCGNNNNNNNCGW 2 cut(s) 501, 510
PfeI GAWTC 2 cut(s) 474, 932
PflMI CCANNNNNTGG 1 cut(s) 831
PkrI GCNGC 4 cut(s) 20, 74, 311, 686
Ppu21I YACGTR 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 823
PspPI GGNCC 1 cut(s) 706
PspXI VCTCGAGB 1 cut(s) 302
PstI CTGCAG 1 cut(s) 45
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 382, 792
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 315, 887, 912
SatI GCNGC 4 cut(s) 19, 73, 310, 685
Sau3AI GATC 3 cut(s) 567, 784, 853
Sau96I GGNCC 1 cut(s) 706
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 2 cut(s) 303, 555
SfaNI GCATC 4 cut(s) 71, 310, 616, 835
SfcI CTRYAG 4 cut(s) 41, 51, 798, 1001
Sfr274I CTCGAG 1 cut(s) 302
SinI GGWCC 1 cut(s) 706
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 382, 792
SmlI CTYRAG 3 cut(s) 103, 302, 911
SmoI CTYRAG 3 cut(s) 103, 302, 911
SphI GCATGC 1 cut(s) 387
Sse9I AATT 4 cut(s) 271, 337, 361, 888
SseBI AGGCCT 1 cut(s) 991
SsiI CCGC 4 cut(s) 163, 211, 221, 936
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 303
StuI AGGCCT 1 cut(s) 991
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 638, 646
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 303, 843
TasI AATT 4 cut(s) 271, 337, 361, 888
TfiI GAWTC 2 cut(s) 474, 932
Tru1I TTAA 3 cut(s) 315, 887, 912
Tru9I TTAA 3 cut(s) 315, 887, 912
TscAI CASTG 4 cut(s) 396, 445, 643, 797
TseI GCWGC 4 cut(s) 18, 72, 309, 684
TspDTI ATGAA 2 cut(s) 588, 829
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 4 cut(s) 396, 445, 643, 797
Van91I CCANNNNNTGG 1 cut(s) 831
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 706
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 103
XapI RAATTY 2 cut(s) 337, 361
XceI RCATGY 1 cut(s) 387
XhoI CTCGAG 1 cut(s) 302
XspI CTAG 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.