Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265095.1

Orthogroup ID

OG0016589

Physical Location & Seq

Genomic Coordinates Reverse (-)

176 .. 787

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265095.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcaaatgattgggattctcccggatgagatcacatacttgtgcttgttgagtgcttgcgctcatgggggcttagtcaaagaagcttggtctttctttgaatgtattggtaaacaaggtatgacgcccaagtctgagcactatgcttgcatggtggatgtattagcacgtagaggcgaagtagaagaggcataccggtttatatgtcgaatgcctagtgatccaactccttccatgctaggtgctctgcttaatgggtgcacgaaccacggaaaattaggtcttgcagaggttgttgggaggaggcttatcgagatacagccaaatcacgatggtagatatgtcggcttgtcaaatgtttatgctgtttccaagcgctgggatgatgcaagaagtctaagaaaagccatggaaaggagaggggtgaagaagtcccctgggtttagtgttgtggagatatttggaacccttcacaaatttatagcccacgataaatcatgccctgattcggaagaaatttatgggatgctgaatgttattgtaaatgaaattagatctgatactgataacagagatcaagaattctatttttatgcagtggaaaatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

203

Amino Acids

22.87

Weight (kDa)

6.08

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08305
fragaria_vesca	FvH4_3g24460
pyrus_communis	pycom03g09570
rosa_chinensis	RchiOBHm_Chr5g0043961
rosa_laevigata	RLG00000034228
rosa_multiflora	Rmu_co8265095.1_g000001 Rmu_sc0002988.1_g000009 Rmu_sc0006669.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037100
rosa_rugosa	Rorug05G0209400
rosa_samantha	Rh5AG293800 Rh5BG302000 Rh5CG329200
rosa_wichuraiana	Rw5G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	378
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	4 cut(s)	476, 516, 581, 604
AcyI	GRCGYC	1 cut(s)	125
AfeI	AGCGCT	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	378, 414, 508
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	3 cut(s)	141, 247, 263
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	377
ApaLI	GTGCAC	1 cut(s)	259
ApoI	RAATTY	4 cut(s)	476, 516, 581, 604
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	62, 378
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	263
Bbv12I	GWGCWC	3 cut(s)	141, 247, 263
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	23
BfaI	CTAG	2 cut(s)	216, 239
BfoI	RGCGCY	1 cut(s)	379
BglII	AGATCT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	23, 438
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	23, 438
BmsI	GCATC	2 cut(s)	376, 516
BpuMI	CCSGG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	268, 408, 436, 437
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 414, 508
Bse118I	RCCGGY	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	268, 408, 436, 437
BseGI	GGATG	4 cut(s)	31, 163, 388, 531
BseLI	CCNNNNNNNGG	3 cut(s)	378, 414, 508
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	378
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	3 cut(s)	141, 247, 263
BsiSI	CCGG	2 cut(s)	23, 196
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	3 cut(s)	378, 414, 508
BsmFI	GGGAC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	141, 247, 263
Bsp143I	GATC	4 cut(s)	30, 220, 554, 574
Bsp19I	CCATGG	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	4 cut(s)	268, 408, 436, 437
BssMI	GATC	4 cut(s)	30, 220, 554, 574
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	58, 148
BstDEI	CTNAG	3 cut(s)	73, 135, 398
BstDSI	CCRYGG	2 cut(s)	268, 408
BstF5I	GGATG	4 cut(s)	31, 163, 388, 531
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	62, 378
BstKTI	GATC	4 cut(s)	33, 223, 557, 577
BstMBI	GATC	4 cut(s)	30, 220, 554, 574
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	21, 436
BstSLI	GKGCMC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BtgI	CCRYGG	2 cut(s)	268, 408
BtsCI	GGATG	4 cut(s)	31, 163, 388, 531
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	58, 148
CfoI	GCGC	2 cut(s)	62, 378
Cfr10I	RCCGGY	1 cut(s)	195
CseI	GACGC	1 cut(s)	133
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	5 cut(s)	65, 151, 235, 409, 498
CviJI	RGCY	7 cut(s)	72, 86, 307, 322, 348, 407, 485
CviKI_1	RGCY	7 cut(s)	72, 86, 307, 322, 348, 407, 485
DdeI	CTNAG	3 cut(s)	73, 135, 398
DpnI	GATC	4 cut(s)	32, 222, 556, 576
DpnII	GATC	4 cut(s)	30, 220, 554, 574
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	5 cut(s)	68, 154, 238, 412, 501
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	5 cut(s)	64, 150, 234, 408, 497
FokI	GGATG	4 cut(s)	38, 170, 395, 538
FspBI	CTAG	2 cut(s)	216, 239
GlaI	GCGC	2 cut(s)	61, 377
GsaI	CCCAGC	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	379
HapII	CCGG	2 cut(s)	23, 196
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	62, 378
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	68, 154, 238, 412, 501
Hin6I	GCGC	2 cut(s)	60, 376
HinP1I	GCGC	2 cut(s)	60, 376
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	16, 506
HpaII	CCGG	2 cut(s)	23, 196
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	113, 261
Hpy188I	TCNGA	3 cut(s)	136, 511, 559
Hpy188III	TCNNGA	3 cut(s)	313, 329, 578
Hpy8I	GTNNAC	2 cut(s)	113, 261
HpyAV	CCTTC	2 cut(s)	240, 479
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	6 cut(s)	4, 150, 261, 287, 389, 596
HpyF3I	CTNAG	3 cut(s)	73, 135, 398
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	68, 154, 238, 412, 501
HspAI	GCGC	2 cut(s)	60, 376
Kzo9I	GATC	4 cut(s)	30, 220, 554, 574
LpnPI	CCDG	6 cut(s)	36, 209, 364, 423, 450, 516
LweI	GCATC	2 cut(s)	376, 516
MaeI	CTAG	2 cut(s)	216, 239
MaeII	ACGT	1 cut(s)	169
MalI	GATC	4 cut(s)	32, 222, 556, 576
MboI	GATC	4 cut(s)	30, 220, 554, 574
MboII	GAAGA	3 cut(s)	197, 439, 524
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	3 cut(s)	141, 247, 263
MluCI	AATT	6 cut(s)	275, 476, 516, 549, 581, 604
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	167, 181, 283, 294, 297, 413
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	2 cut(s)	23, 196
MspR9I	CCNGG	2 cut(s)	23, 438
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	438
NciI	CCSGG	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	30, 220, 554, 574
NlaIII	CATG	5 cut(s)	68, 154, 238, 412, 501
NlaIV	GGNNCC	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	16, 506
PflMI	CCANNNNNTGG	1 cut(s)	378
PfoI	TCCNGGA	1 cut(s)	21
PinAI	ACCGGT	1 cut(s)	195
Ppu21I	YACGTR	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	4 cut(s)	30, 220, 554, 574
ScrFI	CCNGG	2 cut(s)	23, 438
SduI	GDGCHC	3 cut(s)	141, 247, 263
SetI	ASST	6 cut(s)	88, 121, 172, 244, 283, 294
SfaNI	GCATC	2 cut(s)	376, 516
SmiMI	CAYNNNNRTG	1 cut(s)	40
Sse9I	AATT	6 cut(s)	275, 476, 516, 549, 581, 604
SspMI	CTAG	2 cut(s)	216, 239
StyD4I	CCNGG	2 cut(s)	21, 436
StyI	CCWWGG	1 cut(s)	408
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	208, 312
TasI	AATT	6 cut(s)	275, 476, 516, 549, 581, 604
TfiI	GAWTC	2 cut(s)	16, 506
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	603
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	603
Van91I	CCANNNNNTGG	1 cut(s)	378
VneI	GTGCAC	1 cut(s)	259
XapI	RAATTY	4 cut(s)	476, 516, 581, 604
XspI	CTAG	2 cut(s)	216, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.