Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016589

Physical Location & Seq

Genomic Coordinates Forward (+)

20928231 .. 20929125

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0209400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCTGGTAATATTCCTCATCATTTTTGCAGTCTTCCTTTCATTCAGATCCTAGACCTTAGTCACAACAGATTTTCAGGGACTATTCCCAAGTGTTTGAATAATTTGGTCGGCTATGGTTATGGAGCCTGGACGTTCTTGACTTCTCAAGTCGGTTATGGAGCCTGGACGTTTTGGACTTCTCGAGTCGGCTATGGTGGCTATGGAATCTGGATGGTCACTGGTGGTCATATGGTAACAACTGTGACTGTAAACGGAAGAGCAAGTGAATACTTCAATAACAATGCGAGGCTTCTATTCACTATTGATTTTTCAAGTAATGATTTAGAAGGTGAAATTCCTGAAGAAATCTGCAGCCTCGTTGGATTAGGTACATTAAACCTGTCCATGAATCAATTAAGTGGAAATATCCCCTCAAAAATTGGAAACTTGCACTTGCTCGAAACACTTGACCTCTCCCAGAACCAGCTTTCAGGACAGATCCCACAAAGTCTCGCTTCTCTTACCTTCTTGTCTCACTTGAACTTGTCTTCCAACAAATTGACCGGAAGAATTCCTTCGGGCAACCAACTTCAGACGCTCGATGATTCATCTATTTATGAGGGCAATCCTTCACTCTGTGGATTTCCTCTCTCAAAATGCCCAGAAGATGGAGACAACATGCTTACATGCATGGGCCTCATGAAGCTGAATTTGATGATGAAAAGCTTGGTTTATATACTAGCGCGGTGCTTGGCTTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

248

Amino Acids

27.06

Weight (kDa)

5.81

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	114 - 199	3.7e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08305
fragaria_vesca	FvH4_3g24460
pyrus_communis	pycom03g09570
rosa_chinensis	RchiOBHm_Chr5g0043961
rosa_laevigata	RLG00000034228
rosa_multiflora	Rmu_co8265095.1_g000001 Rmu_sc0002988.1_g000009 Rmu_sc0006669.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037100
rosa_rugosa	Rorug05G0209400
rosa_samantha	Rh5AG293800 Rh5BG302000 Rh5CG329200
rosa_wichuraiana	Rw5G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccII	CGCG	1 cut(s)	727
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	2 cut(s)	43, 475
AcsI	RAATTY	3 cut(s)	336, 552, 691
AcuI	CTGAAG	2 cut(s)	363, 557
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	4 cut(s)	100, 277, 315, 523
AjnI	CCWGG	2 cut(s)	128, 164
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	3 cut(s)	469, 688, 708
AluI	AGCT	3 cut(s)	469, 688, 708
Alw26I	GTCTC	3 cut(s)	497, 519, 648
AlwI	GGATC	2 cut(s)	43, 475
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	3 cut(s)	336, 552, 691
Asp700I	GAANNNNTTC	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	26, 522
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	208, 644
BciT130I	CCWGG	2 cut(s)	130, 166
BcoDI	GTCTC	3 cut(s)	497, 519, 648
BfaI	CTAG	2 cut(s)	53, 722
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
Bme1390I	CCNGG	2 cut(s)	130, 166
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	676
BmiI	GGNNCC	2 cut(s)	127, 163
BmrFI	CCNGG	2 cut(s)	130, 166
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	26, 522
BpuEI	CTTGAG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	130, 166
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	546
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	3 cut(s)	497, 519, 648
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	678
BsoBI	CYCGRG	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	48, 480
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	1 cut(s)	678
BspFNI	CGCG	1 cut(s)	727
BspHI	TCATGA	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	127, 163
BspMAI	CTGCAG	1 cut(s)	356
BspPI	GGATC	2 cut(s)	43, 475
BspQI	GCTCTTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	48, 480
Bst2UI	CCWGG	2 cut(s)	130, 166
Bst4CI	ACNGT	2 cut(s)	244, 250
Bst6I	CTCTTC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	2 cut(s)	51, 483
BstMAI	GTCTC	3 cut(s)	497, 519, 648
BstMBI	GATC	2 cut(s)	48, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	130, 166
BstNSI	RCATGY	2 cut(s)	664, 672
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	128, 164
BstSFI	CTRYAG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	2 cut(s)	26, 522
BstX2I	RGATCY	2 cut(s)	48, 480
BstYI	RGATCY	2 cut(s)	48, 480
BsuRI	GGCC	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CciI	TCATGA	1 cut(s)	681
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	1 cut(s)	676
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	5 cut(s)	388, 661, 669, 673, 682
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	50, 482
DpnII	GATC	2 cut(s)	48, 480
DraIII	CACNNNGTG	1 cut(s)	620
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	363, 557
Eco88I	CYCGRG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	128, 164
EcoT22I	ATGCAT	1 cut(s)	674
FaeI	CATG	5 cut(s)	391, 664, 672, 676, 685
FalI	AAGNNNNNCTT	4 cut(s)	481, 513, 541, 573
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	387, 660, 668, 672, 681
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	2 cut(s)	53, 722
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	5 cut(s)	391, 664, 672, 676, 685
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	1 cut(s)	706
HinfI	GANTC	4 cut(s)	186, 207, 391, 587
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	48, 576
Hpy188III	TCNNGA	6 cut(s)	139, 183, 211, 341, 474, 682
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	323, 517, 567, 621
HpyCH4III	ACNGT	2 cut(s)	244, 250
HpyCH4IV	ACGT	2 cut(s)	134, 170
HpyCH4V	TGCA	4 cut(s)	30, 354, 433, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	134, 170
Hsp92II	CATG	5 cut(s)	391, 664, 672, 676, 685
HspAI	GCGC	1 cut(s)	725
Kzo9I	GATC	2 cut(s)	48, 480
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	125, 161
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	53, 722
MaeII	ACGT	2 cut(s)	134, 170
MaeIII	GTNAC	4 cut(s)	62, 217, 235, 244
MalI	GATC	2 cut(s)	50, 482
MboI	GATC	2 cut(s)	48, 480
MboII	GAAGA	6 cut(s)	26, 270, 356, 522, 561, 659
MflI	RGATCY	2 cut(s)	48, 480
MluCI	AATT	7 cut(s)	103, 336, 395, 420, 539, 552, 691
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	343, 558
MnlI	CCTC	8 cut(s)	27, 282, 368, 424, 464, 595, 639, 689
Mph1103I	ATGCAT	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	556
MseI	TTAA	2 cut(s)	377, 398
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	2 cut(s)	130, 166
MvaI	CCWGG	2 cut(s)	130, 166
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	2 cut(s)	48, 480
NlaIII	CATG	5 cut(s)	391, 664, 672, 676, 685
NlaIV	GGNNCC	2 cut(s)	127, 163
NmuCI	GTSAC	3 cut(s)	62, 217, 244
NsiI	ATGCAT	1 cut(s)	674
NspI	RCATGY	2 cut(s)	664, 672
PaeR7I	CTCGAG	1 cut(s)	183
PagI	TCATGA	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	207, 391, 587
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshAI	GACNNNNGTC	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	128, 164
PspGI	CCWGG	2 cut(s)	128, 164
PspN4I	GGNNCC	2 cut(s)	127, 163
PspPI	GGNCC	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	48, 480
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	377, 398
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	2 cut(s)	48, 480
Sau96I	GGNCC	1 cut(s)	676
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	130, 166
SfcI	CTRYAG	1 cut(s)	352
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmlI	CTYRAG	2 cut(s)	147, 183
SmoI	CTYRAG	2 cut(s)	147, 183
Sse9I	AATT	7 cut(s)	103, 336, 395, 420, 539, 552, 691
SsiI	CCGC	1 cut(s)	727
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	2 cut(s)	53, 722
StyD4I	CCNGG	2 cut(s)	128, 164
TaaI	ACNGT	2 cut(s)	244, 250
TaiI	ACGT	2 cut(s)	137, 173
TaqI	TCGA	3 cut(s)	184, 441, 582
TasI	AATT	7 cut(s)	103, 336, 395, 420, 539, 552, 691
TfiI	GAWTC	3 cut(s)	207, 391, 587
Tru1I	TTAA	2 cut(s)	377, 398
Tru9I	TTAA	2 cut(s)	377, 398
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	62, 217, 244
TseI	GCWGC	1 cut(s)	354
Tsp45I	GTSAC	3 cut(s)	62, 217, 244
TspDTI	ATGAA	5 cut(s)	31, 404, 579, 698, 716
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	650
XapI	RAATTY	3 cut(s)	336, 552, 691
XceI	RCATGY	2 cut(s)	664, 672
XhoI	CTCGAG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	2 cut(s)	53, 722
Zsp2I	ATGCAT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.