Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016589

Physical Location & Seq

Genomic Coordinates Forward (+)

38903354 .. 38904985

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

ATGTTGAATGCCTGGTTTCCCACCAAAAGTCCTATTATACTCCAAACCATAATCACTAACCTTCATGAAAACTGCAAATCAATGTCGGAGCTCAAGCAAATCCATGCTCTGCTCCTCACTTCTGGCCTCTCCCAACAGCAATCCTTTACTTCCGAAATCATCAGTTTCTCAGCGCTATCGGATTCCGGTAACATAGACTACTCGTACCGGGTCCTAACCCAACTCCCCACCCCAACAGTTTTTGATTGGAACGCAGTCATCAGAGGCTACTCCAAGAGCAAAAACCCCAACCGTTCGATTTCCGTCTTCATCAAAATGCTGCGCCATGGGGCCTCACCGGATTACTTAACGTACCCTTTTCTGGCCAAAGCCTCGGCGCGTTTGTTGAAGCGTGAGCTTGGTGTGGCGGTGCATGGCCACATTGTCAAAACTGGGTTTGAGTCGGATAGGTTTATAAGTAACTCCTTGATTCATATGTATGCTACTTGTAGGGATGTAGTGTATGCACGTAAGGTGTTCGATGAAATTCCTGTGAGGAACTCGGTTTCTTGGAATTCCATGCTGGATGGATATGCAAAGTGTGGGGATGTGGTTTCAGCTAGGGAGGTGTTTGAGATGATGCCGGAGCGTGATGTTGTGTCTTGGAGCTCTTTGATTGATGGGTACGTCAAGGATGGGGAGTATGGGGAGGCTTTGAAAGTGTTCGAGAGAATGCGGGTTATGGGGCCGAAAGCGAATGAGGTGACTATGGTGAGTGTTTTGTGTGCGTGTGCTCACCTAGGTGCGCTTGAGCAAGGGAAGACAATGCATTGTTATATGATGGAGAATAAGTTGCCGTTAACTTTGGTGTTGCGAACGGCACTTGTGGACATGTATGCAAAGTGTGGAGCGGTAGACGAGGCTTTACATGTTTTTCGTGGGGTTTCGTTGCAGCAGTCGGATGTGTTGATTTGGAATGCAATGATCGGAGGACTTGCAACTCATGGATTAGTCCAACAGTCACTTGAATATTTTAGGGAGATGCAAATGATTGGGATTGTCCCGGATGAGATCACATACTTGTGCTTGTTGAGTGCTTGCGCTCATGGGGGCTTAGTCAAAGAAGCTTGGTCTTTCTTTGAATGTATTGGTAAACGTGGTATGACGCCCAAGTCTGAGCACTATGCTTGCATGGTGGATGTATTAGCACGTAGAGGCGAAGTAGAAGAGGCATACCGGTTTATATGTCAAATGCCTAGTGATCCAACTCCTTCCATGCTAGGTGCTCTGCTTAATGGGTGCACGAACCACGGAAAATTAGGTCTTGCAGAGGTTGTTGGGAGGAGGCTTATCGAGATACAGCCAAATCACGATGGTAGATATGTCGGCTTGTCAAATGTTTATGCTGTTTCCAAGCGCTGGGATGATGCAAGAAGTCTAAGAAAAGCCATGGAAAGGAGAGGGGTGAAGAAGTCCCCTGGGTTTAGTGTTGTGGAGATATTTGGAACCCTTCACAAATTTATAGCCCGCGATAAATCATACCCTGATTCGGAAGAAATTTATGGGATGCTGAATGTTATTGTAAATGAAATTAGATCTGATACTGATAACAGAGATCAAGAATTCTTTTTTTATGCAGTGGAAAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

543

Amino Acids

61.01

Weight (kDa)

6.94

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	78 - 124	9.2e-07	PPR repeat family
PPR_2	PF13041	179 - 211	4e-06	PPR repeat family
PPR	PF01535	182 - 211	3.9e-08	PPR repeat
PPR_2	PF13041	210 - 259	3.3e-10	PPR repeat family
PPR_1	PF12854	210 - 239	3e-06	PPR repeat
PPR	PF01535	213 - 242	1.8e-08	PPR repeat
PPR_2	PF13041	314 - 362	1.2e-09	PPR repeat family
E_motif	PF20431	432 - 492	1.4e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08305
fragaria_vesca	FvH4_3g24460
pyrus_communis	pycom03g09570
rosa_chinensis	RchiOBHm_Chr5g0043961
rosa_laevigata	RLG00000034228
rosa_multiflora	Rmu_co8265095.1_g000001 Rmu_sc0002988.1_g000009 Rmu_sc0006669.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037100
rosa_rugosa	Rorug05G0209400
rosa_samantha	Rh5AG293800 Rh5BG302000 Rh5CG329200
rosa_wichuraiana	Rw5G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AasI	GACNNNNNNGTC	1 cut(s)	1150
AccB7I	CCANNNNNTGG	1 cut(s)	1398
AccBSI	CCGCTC	1 cut(s)	890
AccI	GTMKAC	1 cut(s)	894
AccII	CGCG	2 cut(s)	379, 1509
AciI	CCGC	4 cut(s)	407, 715, 890, 1507
AclWI	GGATC	1 cut(s)	1235
AcoI	YGGCCR	2 cut(s)	363, 415
AcsI	RAATTY	6 cut(s)	525, 553, 1496, 1536, 1601, 1624
AcyI	GRCGYC	1 cut(s)	1145
AfaI	GTAC	3 cut(s)	206, 353, 665
AfeI	AGCGCT	2 cut(s)	174, 1397
AfiI	CCNNNNNNNGG	4 cut(s)	361, 1398, 1434, 1528
AflIII	ACRYGT	2 cut(s)	870, 907
AgeI	ACCGGT	1 cut(s)	1215
AgsI	TTSAA	5 cut(s)	7, 388, 697, 1007, 1121
AjnI	CCWGG	2 cut(s)	11, 1456
AleI	CACNNNNGTG	1 cut(s)	780
AluBI	AGCT	5 cut(s)	91, 397, 599, 648, 1106
AluI	AGCT	5 cut(s)	91, 397, 599, 648, 1106
Alw21I	GWGCWC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
Alw44I	GTGCAC	1 cut(s)	1279
AlwI	GGATC	1 cut(s)	1235
Aor51HI	AGCGCT	2 cut(s)	174, 1397
AoxI	GGCC	5 cut(s)	124, 330, 363, 415, 725
ApaLI	GTGCAC	1 cut(s)	1279
ApeKI	GCWGC	2 cut(s)	319, 931
ApoI	RAATTY	6 cut(s)	525, 553, 1496, 1536, 1601, 1624
AsiGI	ACCGGT	1 cut(s)	1215
Asp700I	GAANNNNTTC	1 cut(s)	701
AspA2I	CCTAGG	1 cut(s)	778
AspLEI	GCGC	6 cut(s)	175, 324, 379, 787, 1082, 1398
AspS9I	GGNCC	3 cut(s)	211, 330, 725
AsuC2I	CCSGG	2 cut(s)	209, 1043
AsuHPI	GGTGA	5 cut(s)	327, 754, 763, 767, 1456
AvaII	GGWCC	1 cut(s)	211
AvrII	CCTAGG	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	1283
BalI	TGGCCA	2 cut(s)	365, 417
BanII	GRGCYC	2 cut(s)	93, 650
BbsI	GAAGAC	2 cut(s)	298, 806
Bbv12I	GWGCWC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
BbvI	GCAGC	2 cut(s)	306, 943
BccI	CCATC	5 cut(s)	560, 653, 668, 814, 1346
BceAI	ACGGC	2 cut(s)	820, 873
BciT130I	CCWGG	2 cut(s)	13, 1458
BcnI	CCSGG	2 cut(s)	209, 1043
BfaI	CTAG	4 cut(s)	600, 779, 1236, 1259
BfoI	RGCGCY	2 cut(s)	176, 1399
BglII	AGATCT	1 cut(s)	1574
BisI	GCNGC	2 cut(s)	320, 932
BlnI	CCTAGG	1 cut(s)	778
BlsI	GCNGC	2 cut(s)	321, 933
Bme1390I	CCNGG	4 cut(s)	13, 209, 1043, 1458
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	211, 330, 725
BmiI	GGNNCC	4 cut(s)	212, 331, 726, 1486
BmrFI	CCNGG	4 cut(s)	13, 209, 1043, 1458
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	4 cut(s)	609, 1011, 1396, 1536
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	298, 806
BpuEI	CTTGAG	2 cut(s)	77, 809
BpuMI	CCSGG	2 cut(s)	209, 1043
BsaAI	YACGTR	2 cut(s)	509, 1190
BsaHI	GRCGYC	1 cut(s)	1145
BsaJI	CCNNGG	7 cut(s)	325, 372, 778, 1288, 1428, 1456, 1457
BsaWI	WCCGGW	3 cut(s)	185, 337, 1215
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 1398, 1434, 1528
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	966
BseBI	CCWGG	2 cut(s)	13, 1458
BseDI	CCNNGG	7 cut(s)	325, 372, 778, 1288, 1428, 1456, 1457
BseGI	GGATG	9 cut(s)	499, 571, 592, 679, 946, 1051, 1183, 1408, 1551
BseLI	CCNNNNNNNGG	4 cut(s)	361, 1398, 1434, 1528
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	2 cut(s)	183, 1146
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	104, 1336
BseSI	GKGCMC	1 cut(s)	1283
BseXI	GCAGC	2 cut(s)	306, 943
BseYI	CCCAGC	1 cut(s)	1398
Bsh1236I	CGCG	2 cut(s)	379, 1509
BshFI	GGCC	5 cut(s)	126, 332, 365, 417, 727
BshTI	ACCGGT	1 cut(s)	1215
BsiHKAI	GWGCWC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
BsiSI	CCGG	6 cut(s)	186, 208, 338, 623, 1043, 1216
BslFI	GGGAC	2 cut(s)	1025, 1438
BslI	CCNNNNNNNGG	4 cut(s)	361, 1398, 1434, 1528
BsmFI	GGGAC	2 cut(s)	1025, 1438
BsmI	GAATGC	3 cut(s)	13, 717, 961
BsnI	GGCC	5 cut(s)	126, 332, 365, 417, 727
Bsp1286I	GDGCHC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
Bsp143I	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
Bsp19I	CCATGG	2 cut(s)	325, 1428
BspACI	CCGC	4 cut(s)	407, 715, 890, 1507
BspANI	GGCC	5 cut(s)	126, 332, 365, 417, 727
BspCNI	CTCAG	2 cut(s)	182, 1147
BspFNI	CGCG	2 cut(s)	379, 1509
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	4 cut(s)	212, 331, 726, 1486
BspPI	GGATC	1 cut(s)	1235
BsrBI	CCGCTC	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	7 cut(s)	325, 372, 778, 1288, 1428, 1456, 1457
BssMI	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
BssNI	GRCGYC	1 cut(s)	1145
BssT1I	CCWWGG	3 cut(s)	325, 778, 1428
Bst2UI	CCWGG	2 cut(s)	13, 1458
Bst4CI	ACNGT	3 cut(s)	238, 293, 999
Bst6I	CTCTTC	1 cut(s)	1200
BstACI	GRCGYC	1 cut(s)	1145
BstBAI	YACGTR	2 cut(s)	509, 1190
BstC8I	GCNNGC	3 cut(s)	1078, 1168, 1507
BstDEI	CTNAG	4 cut(s)	169, 1093, 1155, 1418
BstDSI	CCRYGG	3 cut(s)	325, 1288, 1428
BstF5I	GGATG	9 cut(s)	499, 571, 592, 679, 946, 1051, 1183, 1408, 1551
BstFNI	CGCG	2 cut(s)	379, 1509
BstH2I	RGCGCY	2 cut(s)	176, 1399
BstHHI	GCGC	6 cut(s)	175, 324, 379, 787, 1082, 1398
BstKTI	GATC	5 cut(s)	966, 1053, 1243, 1577, 1597
BstMBI	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
BstNI	CCWGG	2 cut(s)	13, 1458
BstNSI	RCATGY	2 cut(s)	874, 911
BstSCI	CCNGG	4 cut(s)	11, 207, 1041, 1456
BstSLI	GKGCMC	1 cut(s)	1283
BstUI	CGCG	2 cut(s)	379, 1509
BstV1I	GCAGC	2 cut(s)	306, 943
BstV2I	GAAGAC	2 cut(s)	298, 806
BstX2I	RGATCY	1 cut(s)	1574
BstYI	RGATCY	1 cut(s)	1574
BsuRI	GGCC	5 cut(s)	126, 332, 365, 417, 727
BtgI	CCRYGG	3 cut(s)	325, 1288, 1428
BtsCI	GGATG	9 cut(s)	499, 571, 592, 679, 946, 1051, 1183, 1408, 1551
BtsI	GCAGTG	1 cut(s)	1623
BtsIMutI	CAGTG	1 cut(s)	1623
Cac8I	GCNNGC	3 cut(s)	1078, 1168, 1507
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	6 cut(s)	175, 324, 379, 787, 1082, 1398
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	3 cut(s)	211, 330, 725
CseI	GACGC	1 cut(s)	1153
Csp6I	GTAC	3 cut(s)	205, 352, 664
CspAI	ACCGGT	1 cut(s)	1215
CviQI	GTAC	3 cut(s)	205, 352, 664
DdeI	CTNAG	4 cut(s)	169, 1093, 1155, 1418
DpnI	GATC	5 cut(s)	965, 1052, 1242, 1576, 1596
DpnII	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
DrdI	GACNNNNNNGTC	1 cut(s)	1150
DseDI	GACNNNNNNGTC	1 cut(s)	1150
EaeI	YGGCCR	2 cut(s)	363, 415
Eam1104I	CTCTTC	1 cut(s)	1200
EarI	CTCTTC	1 cut(s)	1200
Ecl136II	GAGCTC	2 cut(s)	91, 648
Eco130I	CCWWGG	3 cut(s)	325, 778, 1428
Eco24I	GRGCYC	2 cut(s)	93, 650
Eco47I	GGWCC	1 cut(s)	211
Eco47III	AGCGCT	2 cut(s)	174, 1397
Eco53kI	GAGCTC	2 cut(s)	91, 648
EcoICRI	GAGCTC	2 cut(s)	91, 648
EcoO109I	RGGNCCY	2 cut(s)	211, 330
EcoRI	GAATTC	2 cut(s)	553, 1601
EcoRII	CCWGG	2 cut(s)	11, 1456
EcoT14I	CCWWGG	3 cut(s)	325, 778, 1428
EcoT22I	ATGCAT	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	93, 650
ErhI	CCWWGG	3 cut(s)	325, 778, 1428
FaqI	GGGAC	2 cut(s)	1025, 1438
FauI	CCCGC	2 cut(s)	708, 1514
FauNDI	CATATG	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	2 cut(s)	320, 932
FokI	GGATG	9 cut(s)	506, 578, 599, 686, 953, 1058, 1190, 1415, 1558
FriOI	GRGCYC	2 cut(s)	93, 650
Fsp4HI	GCNGC	2 cut(s)	320, 932
FspBI	CTAG	4 cut(s)	600, 779, 1236, 1259
GlaI	GCGC	6 cut(s)	174, 323, 378, 786, 1081, 1397
GluI	GCNGC	2 cut(s)	320, 932
GsaI	CCCAGC	1 cut(s)	1402
HaeII	RGCGCY	2 cut(s)	176, 1399
HaeIII	GGCC	5 cut(s)	126, 332, 365, 417, 727
HapII	CCGG	6 cut(s)	186, 208, 338, 623, 1043, 1216
HgaI	GACGC	1 cut(s)	1153
HhaI	GCGC	6 cut(s)	175, 324, 379, 787, 1082, 1398
Hin1I	GRCGYC	1 cut(s)	1145
Hin6I	GCGC	6 cut(s)	173, 322, 377, 785, 1080, 1396
HinP1I	GCGC	6 cut(s)	173, 322, 377, 785, 1080, 1396
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	4 cut(s)	182, 440, 469, 1526
HpaI	GTTAAC	1 cut(s)	840
HpaII	CCGG	6 cut(s)	186, 208, 338, 623, 1043, 1216
HphI	GGTGA	5 cut(s)	327, 754, 763, 767, 1456
Hpy166II	GTNNAC	5 cut(s)	840, 868, 895, 1133, 1281
Hpy188III	TCNNGA	5 cut(s)	65, 706, 1333, 1349, 1598
Hpy8I	GTNNAC	5 cut(s)	840, 868, 895, 1133, 1281
HpyAV	CCTTC	3 cut(s)	71, 1260, 1499
HpyCH4III	ACNGT	3 cut(s)	238, 293, 999
HpyCH4IV	ACGT	5 cut(s)	350, 508, 666, 1135, 1189
HpyF3I	CTNAG	4 cut(s)	169, 1093, 1155, 1418
HpySE526I	ACGT	5 cut(s)	350, 508, 666, 1135, 1189
Hsp92I	GRCGYC	1 cut(s)	1145
HspAI	GCGC	6 cut(s)	173, 322, 377, 785, 1080, 1396
KspAI	GTTAAC	1 cut(s)	840
Kzo9I	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
LmnI	GCTCC	5 cut(s)	88, 117, 625, 645, 887
Lsp1109I	GCAGC	2 cut(s)	306, 943
LweI	GCATC	4 cut(s)	609, 1011, 1396, 1536
MaeI	CTAG	4 cut(s)	600, 779, 1236, 1259
MaeII	ACGT	5 cut(s)	350, 508, 666, 1135, 1189
MaeIII	GTNAC	4 cut(s)	188, 458, 742, 999
MalI	GATC	5 cut(s)	965, 1052, 1242, 1576, 1596
MbiI	CCGCTC	1 cut(s)	890
MboI	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
MboII	GAAGA	5 cut(s)	298, 811, 1217, 1459, 1544
MflI	RGATCY	1 cut(s)	1574
MhlI	GDGCHC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
MlsI	TGGCCA	2 cut(s)	365, 417
MluCI	AATT	8 cut(s)	525, 553, 1295, 1496, 1536, 1569, 1601, 1624
MluNI	TGGCCA	2 cut(s)	365, 417
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	5 cut(s)	66, 423, 918, 1018, 1268
Mox20I	TGGCCA	2 cut(s)	365, 417
Mph1103I	ATGCAT	1 cut(s)	810
MroXI	GAANNNNTTC	1 cut(s)	701
MscI	TGGCCA	2 cut(s)	365, 417
MseI	TTAA	3 cut(s)	347, 839, 1272
MslI	CAYNNNNRTG	4 cut(s)	314, 477, 780, 1060
Msp20I	TGGCCA	2 cut(s)	365, 417
MspI	CCGG	6 cut(s)	186, 208, 338, 623, 1043, 1216
MspR9I	CCNGG	4 cut(s)	13, 209, 1043, 1458
Mva1269I	GAATGC	3 cut(s)	13, 717, 961
MvaI	CCWGG	2 cut(s)	13, 1458
MvnI	CGCG	2 cut(s)	379, 1509
NciI	CCSGG	2 cut(s)	209, 1043
NcoI	CCATGG	2 cut(s)	325, 1428
NdeI	CATATG	1 cut(s)	474
NdeII	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
NlaIV	GGNNCC	4 cut(s)	212, 331, 726, 1486
NmeAIII	GCCGAG	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	742, 999
NsiI	ATGCAT	1 cut(s)	810
NspI	RCATGY	2 cut(s)	874, 911
OliI	CACNNNNGTG	1 cut(s)	780
PagI	TCATGA	1 cut(s)	64
PasI	CCCWGGG	1 cut(s)	1457
PciI	ACATGT	2 cut(s)	870, 907
PctI	GAATGC	3 cut(s)	13, 717, 961
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	182, 469, 1526
PflMI	CCANNNNNTGG	1 cut(s)	1398
PfoI	TCCNGGA	1 cut(s)	1041
PinAI	ACCGGT	1 cut(s)	1215
PkrI	GCNGC	2 cut(s)	321, 933
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Ppu21I	YACGTR	2 cut(s)	509, 1190
PpuMI	RGGWCCY	1 cut(s)	211
PscI	ACATGT	2 cut(s)	870, 907
PsiI	TTATAA	1 cut(s)	455
Psp124BI	GAGCTC	2 cut(s)	93, 650
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	11, 1456
PspFI	CCCAGC	1 cut(s)	1398
PspGI	CCWGG	2 cut(s)	11, 1456
PspN4I	GGNNCC	4 cut(s)	212, 331, 726, 1486
PspPI	GGNCC	3 cut(s)	211, 330, 725
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	1574
RsaI	GTAC	3 cut(s)	206, 353, 665
RsaNI	GTAC	3 cut(s)	205, 352, 664
RseI	CAYNNNNRTG	4 cut(s)	314, 477, 780, 1060
SacI	GAGCTC	2 cut(s)	93, 650
SaqAI	TTAA	3 cut(s)	347, 839, 1272
SatI	GCNGC	2 cut(s)	320, 932
Sau3AI	GATC	5 cut(s)	963, 1050, 1240, 1574, 1594
Sau96I	GGNCC	3 cut(s)	211, 330, 725
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	4 cut(s)	13, 209, 1043, 1458
SduI	GDGCHC	6 cut(s)	93, 650, 775, 1161, 1267, 1283
SfaNI	GCATC	4 cut(s)	609, 1011, 1396, 1536
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	4 cut(s)	314, 477, 780, 1060
SmlI	CTYRAG	2 cut(s)	92, 788
SmoI	CTYRAG	2 cut(s)	92, 788
Sse9I	AATT	8 cut(s)	525, 553, 1295, 1496, 1536, 1569, 1601, 1624
SsiI	CCGC	4 cut(s)	407, 715, 890, 1507
SspI	AATATT	1 cut(s)	1010
SspMI	CTAG	4 cut(s)	600, 779, 1236, 1259
SstI	GAGCTC	2 cut(s)	93, 650
StyD4I	CCNGG	4 cut(s)	11, 207, 1041, 1456
StyI	CCWWGG	3 cut(s)	325, 778, 1428
TaaI	ACNGT	3 cut(s)	238, 293, 999
TaiI	ACGT	5 cut(s)	353, 511, 669, 1138, 1192
TaqI	TCGA	4 cut(s)	296, 519, 705, 1332
TasI	AATT	8 cut(s)	525, 553, 1295, 1496, 1536, 1569, 1601, 1624
TfiI	GAWTC	3 cut(s)	182, 469, 1526
Tru1I	TTAA	3 cut(s)	347, 839, 1272
Tru9I	TTAA	3 cut(s)	347, 839, 1272
TscAI	CASTG	1 cut(s)	1623
TseFI	GTSAC	2 cut(s)	742, 999
TseI	GCWGC	2 cut(s)	319, 931
Tsp45I	GTSAC	2 cut(s)	742, 999
TspDTI	ATGAA	6 cut(s)	53, 81, 298, 461, 537, 1581
TspGWI	ACGGA	2 cut(s)	292, 1305
TspRI	CASTG	1 cut(s)	1623
Van91I	CCANNNNNTGG	1 cut(s)	1398
VneI	GTGCAC	1 cut(s)	1279
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	6 cut(s)	525, 553, 1496, 1536, 1601, 1624
XceI	RCATGY	2 cut(s)	874, 911
XmaJI	CCTAGG	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	4 cut(s)	600, 779, 1236, 1259
Zsp2I	ATGCAT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.