Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016589

Physical Location & Seq

Genomic Coordinates Reverse (-)

54148641 .. 54150171

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCTCTGCTCCTCACTTCTGGGCCTCTCCCAACAACAATCCTTCACTTCCGAAATCATCAACTTCTCAGCGCTATCGGATTCCGGTAACATAGACTACTCCTTCCGCGTCCTAACCCAACTCCCCACCCCAACAGTCTTTGATTGGAACGCAGTCATCAGAGGCTACTCCAAGAGCAGAAACCCCAACCGTTCGATTTCCGTCTTCATCAAAATGCTGCGTCATGGGGCCTCACCGGATTATTTAACGTACCCTTTTCTGGCCAAAGCATCGGCGCGTTTGTTGAAGCGTGAGCTTGGTGTGGCGGTGCATGGCCACATTGTCAAAGCTGGGTTTGAGTCGGATAGGTTTATAACTAACTCCTTGATTCATATGTATGCTACTTGTGCGCTTGAGCAAGGGAGGACAATGCATTGTTACACGATGGAGAATAAGTTGCCGTTAACTTTGGTGTTGCGAACGGCACTTGTGGACATGTATGCAAAGTGTGGGGCAGTAGACGAGGCTTTACATGTTTTTAGTGGGGTTTCATTGAAGCAGTCGGATGTGTTGATTTGGAATGCAATGATCGGAGGACTTGCAACTCATGGATTAGTCCAACAGTCGCTTGAATATTTTAGGGAGATGCAAATGATTGGGATCGTCCCGGATGAGATCACGTACCTGTGCTTGTTGAGTGCTTGCGCTCATGGGGGCTTGGTCAGAGAAGCTTGGCATTTCTTTGAATGTATTGGTAAACATGGTATGACACCCAAGTCTGAGCACTATGCTTGCATGGTGGATGTATTAGCACGTAGAGGCCAGGTAGAAGAGGCATACCAGTTTATATGTCAAATGCCTAGTGATCCAAGTCCTTCCATGCTAGGTGCTCTGCTTAATGGGTGCACGAACCATGGAAAATTAGGTCTTGCAGAGGTTGTTGGGAGGAGGCTTATCGAGATACAGCCAAATCACGATGGTAGATATGTTGGCCTGTCAAATGTTTATGCTGTTTCTAAGCGCTGGGATGATGCAAGAAGTCTAAGAAAAGCCATGGAAAGGAGAGGGGTGAAAAAGTCCCCTGGTTTTAGTTTTGTGGAGATATTTGGAACCCTTCACAAATTTATAGCCCACGATAAATCATGCCCTGATTCAGAAGAAATTTATGGGATGCTGAATGTTATTGTAAATGAAATTAGATCTGATACTGATAACAGAGATCAAGAATTCTTTTTTTATGCAGTGGAAAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

411

Amino Acids

46.06

Weight (kDa)

6.94

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	44 - 90	9.3e-07	PPR repeat family
PPR_2	PF13041	182 - 230	8.2e-10	PPR repeat family
E_motif	PF20431	300 - 360	7.9e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08305
fragaria_vesca	FvH4_3g24460
pyrus_communis	pycom03g09570
rosa_chinensis	RchiOBHm_Chr5g0043961
rosa_laevigata	RLG00000034228
rosa_multiflora	Rmu_co8265095.1_g000001 Rmu_sc0002988.1_g000009 Rmu_sc0006669.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037100
rosa_rugosa	Rorug05G0209400
rosa_samantha	Rh5AG293800 Rh5BG302000 Rh5CG329200
rosa_wichuraiana	Rw5G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AasI	GACNNNNNNGTC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	498
AccII	CGCG	2 cut(s)	108, 277
AciI	CCGC	2 cut(s)	106, 305
AclWI	GGATC	2 cut(s)	647, 839
AcoI	YGGCCR	2 cut(s)	261, 313
AcsI	RAATTY	4 cut(s)	1100, 1140, 1205, 1228
AfaI	GTAC	2 cut(s)	251, 662
AfeI	AGCGCT	2 cut(s)	72, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	259, 1038
AflIII	ACRYGT	2 cut(s)	474, 511
AgsI	TTSAA	4 cut(s)	286, 535, 611, 725
AjnI	CCWGG	2 cut(s)	801, 1060
AluBI	AGCT	3 cut(s)	295, 329, 710
AluI	AGCT	3 cut(s)	295, 329, 710
Alw21I	GWGCWC	3 cut(s)	765, 871, 887
Alw44I	GTGCAC	1 cut(s)	883
AlwI	GGATC	2 cut(s)	647, 839
Aor51HI	AGCGCT	2 cut(s)	72, 1001
AoxI	GGCC	6 cut(s)	22, 228, 261, 313, 799, 970
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	4 cut(s)	1100, 1140, 1205, 1228
AspLEI	GCGC	5 cut(s)	73, 277, 391, 686, 1002
AspS9I	GGNCC	2 cut(s)	22, 228
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	225, 1060
BaeGI	GKGCMC	1 cut(s)	887
BalI	TGGCCA	2 cut(s)	263, 315
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	3 cut(s)	765, 871, 887
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	418, 950
BceAI	ACGGC	2 cut(s)	424, 477
BciT130I	CCWGG	2 cut(s)	803, 1062
BcnI	CCSGG	1 cut(s)	647
BfaI	CTAG	2 cut(s)	840, 863
BfoI	RGCGCY	2 cut(s)	74, 1003
BglII	AGATCT	1 cut(s)	1178
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	647, 803, 1062
BmgT120I	GGNCC	2 cut(s)	22, 228
BmiI	GGNNCC	2 cut(s)	229, 1090
BmrFI	CCNGG	3 cut(s)	647, 803, 1062
BmsI	GCATC	4 cut(s)	278, 615, 1000, 1140
BpiI	GAAGAC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	647
BsaAI	YACGTR	2 cut(s)	660, 794
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	3 cut(s)	892, 1032, 1060
BsaWI	WCCGGW	2 cut(s)	83, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 1038
Bse1I	ACTGG	1 cut(s)	820
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	803, 1062
BseDI	CCNNGG	3 cut(s)	892, 1032, 1060
BseGI	GGATG	5 cut(s)	550, 655, 787, 1012, 1155
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	259, 1038
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	81, 750
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	1 cut(s)	940
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	2 cut(s)	329, 1002
Bsh1236I	CGCG	2 cut(s)	108, 277
BshFI	GGCC	6 cut(s)	24, 230, 263, 315, 801, 972
BsiHKAI	GWGCWC	3 cut(s)	765, 871, 887
BsiSI	CCGG	3 cut(s)	84, 236, 647
BslFI	GGGAC	2 cut(s)	629, 1042
BslI	CCNNNNNNNGG	2 cut(s)	259, 1038
BsmFI	GGGAC	2 cut(s)	629, 1042
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	6 cut(s)	24, 230, 263, 315, 801, 972
Bsp1286I	GDGCHC	3 cut(s)	765, 871, 887
Bsp143I	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
Bsp19I	CCATGG	2 cut(s)	892, 1032
BspACI	CCGC	2 cut(s)	106, 305
BspANI	GGCC	6 cut(s)	24, 230, 263, 315, 801, 972
BspCNI	CTCAG	2 cut(s)	80, 751
BspFNI	CGCG	2 cut(s)	108, 277
BspLI	GGNNCC	2 cut(s)	229, 1090
BspPI	GGATC	2 cut(s)	647, 839
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	3 cut(s)	892, 1032, 1060
BssMI	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
BssT1I	CCWWGG	2 cut(s)	892, 1032
Bst2UI	CCWGG	2 cut(s)	803, 1062
Bst4CI	ACNGT	3 cut(s)	136, 191, 603
Bst6I	CTCTTC	1 cut(s)	804
BstBAI	YACGTR	2 cut(s)	660, 794
BstC8I	GCNNGC	2 cut(s)	682, 772
BstDEI	CTNAG	4 cut(s)	67, 759, 996, 1022
BstDSI	CCRYGG	2 cut(s)	892, 1032
BstF5I	GGATG	5 cut(s)	550, 655, 787, 1012, 1155
BstFNI	CGCG	2 cut(s)	108, 277
BstH2I	RGCGCY	2 cut(s)	74, 1003
BstHHI	GCGC	5 cut(s)	73, 277, 391, 686, 1002
BstKTI	GATC	6 cut(s)	570, 642, 657, 847, 1181, 1201
BstMBI	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	2 cut(s)	803, 1062
BstNSI	RCATGY	2 cut(s)	478, 515
BstSCI	CCNGG	3 cut(s)	645, 801, 1060
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	2 cut(s)	108, 277
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	1178
BstYI	RGATCY	1 cut(s)	1178
BsuRI	GGCC	6 cut(s)	24, 230, 263, 315, 801, 972
BtgI	CCRYGG	2 cut(s)	892, 1032
BtsCI	GGATG	5 cut(s)	550, 655, 787, 1012, 1155
BtsI	GCAGTG	1 cut(s)	1227
BtsIMutI	CAGTG	1 cut(s)	1227
Cac8I	GCNNGC	2 cut(s)	682, 772
CfoI	GCGC	5 cut(s)	73, 277, 391, 686, 1002
Cfr13I	GGNCC	2 cut(s)	22, 228
CseI	GACGC	2 cut(s)	97, 209
Csp6I	GTAC	2 cut(s)	250, 661
CviQI	GTAC	2 cut(s)	250, 661
DdeI	CTNAG	4 cut(s)	67, 759, 996, 1022
DpnI	GATC	6 cut(s)	569, 641, 656, 846, 1180, 1200
DpnII	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	2 cut(s)	261, 313
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco130I	CCWWGG	2 cut(s)	892, 1032
Eco47III	AGCGCT	2 cut(s)	72, 1001
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	1205
EcoRII	CCWGG	2 cut(s)	801, 1060
EcoT14I	CCWWGG	2 cut(s)	892, 1032
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	892, 1032
FaqI	GGGAC	2 cut(s)	629, 1042
FauNDI	CATATG	1 cut(s)	372
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	5 cut(s)	557, 662, 794, 1019, 1162
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	840, 863
GlaI	GCGC	5 cut(s)	72, 276, 390, 685, 1001
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	2 cut(s)	333, 1006
HaeII	RGCGCY	2 cut(s)	74, 1003
HaeIII	GGCC	6 cut(s)	24, 230, 263, 315, 801, 972
HapII	CCGG	3 cut(s)	84, 236, 647
HgaI	GACGC	2 cut(s)	97, 209
HhaI	GCGC	5 cut(s)	73, 277, 391, 686, 1002
Hin6I	GCGC	5 cut(s)	71, 275, 389, 684, 1000
HinP1I	GCGC	5 cut(s)	71, 275, 389, 684, 1000
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	4 cut(s)	80, 338, 367, 1130
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	3 cut(s)	84, 236, 647
HphI	GGTGA	2 cut(s)	225, 1060
Hpy166II	GTNNAC	5 cut(s)	444, 472, 499, 737, 885
Hpy188III	TCNNGA	3 cut(s)	937, 953, 1202
Hpy8I	GTNNAC	5 cut(s)	444, 472, 499, 737, 885
HpyAV	CCTTC	4 cut(s)	52, 112, 864, 1103
HpyCH4III	ACNGT	3 cut(s)	136, 191, 603
HpyCH4IV	ACGT	3 cut(s)	248, 659, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	67, 759, 996, 1022
HpySE526I	ACGT	3 cut(s)	248, 659, 793
HspAI	GCGC	5 cut(s)	71, 275, 389, 684, 1000
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	4 cut(s)	278, 615, 1000, 1140
MaeI	CTAG	2 cut(s)	840, 863
MaeII	ACGT	3 cut(s)	248, 659, 793
MaeIII	GTNAC	2 cut(s)	86, 416
MalI	GATC	6 cut(s)	569, 641, 656, 846, 1180, 1200
MboI	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
MboII	GAAGA	3 cut(s)	196, 821, 1148
MflI	RGATCY	1 cut(s)	1178
MhlI	GDGCHC	3 cut(s)	765, 871, 887
MlsI	TGGCCA	2 cut(s)	263, 315
MluCI	AATT	6 cut(s)	899, 1100, 1140, 1173, 1205, 1228
MluNI	TGGCCA	2 cut(s)	263, 315
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	321, 522, 622
Mox20I	TGGCCA	2 cut(s)	263, 315
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	2 cut(s)	263, 315
MseI	TTAA	3 cut(s)	245, 443, 876
MslI	CAYNNNNRTG	2 cut(s)	212, 375
Msp20I	TGGCCA	2 cut(s)	263, 315
MspI	CCGG	3 cut(s)	84, 236, 647
MspR9I	CCNGG	3 cut(s)	647, 803, 1062
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	2 cut(s)	803, 1062
MvnI	CGCG	2 cut(s)	108, 277
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	647
NcoI	CCATGG	2 cut(s)	892, 1032
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
NlaIV	GGNNCC	2 cut(s)	229, 1090
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	2 cut(s)	478, 515
PciI	ACATGT	2 cut(s)	474, 511
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	80, 367, 1130
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	2 cut(s)	660, 794
PscI	ACATGT	2 cut(s)	474, 511
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	801, 1060
PspFI	CCCAGC	2 cut(s)	329, 1002
PspGI	CCWGG	2 cut(s)	801, 1060
PspN4I	GGNNCC	2 cut(s)	229, 1090
PspPI	GGNCC	2 cut(s)	22, 228
PsuI	RGATCY	1 cut(s)	1178
RsaI	GTAC	2 cut(s)	251, 662
RsaNI	GTAC	2 cut(s)	250, 661
RseI	CAYNNNNRTG	2 cut(s)	212, 375
SaqAI	TTAA	3 cut(s)	245, 443, 876
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	6 cut(s)	567, 639, 654, 844, 1178, 1198
Sau96I	GGNCC	2 cut(s)	22, 228
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	647, 803, 1062
SduI	GDGCHC	3 cut(s)	765, 871, 887
SfaNI	GCATC	4 cut(s)	278, 615, 1000, 1140
SmiMI	CAYNNNNRTG	2 cut(s)	212, 375
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	6 cut(s)	899, 1100, 1140, 1173, 1205, 1228
SsiI	CCGC	2 cut(s)	106, 305
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	2 cut(s)	840, 863
StyD4I	CCNGG	3 cut(s)	645, 801, 1060
StyI	CCWWGG	2 cut(s)	892, 1032
TaaI	ACNGT	3 cut(s)	136, 191, 603
TaiI	ACGT	3 cut(s)	251, 662, 796
TaqI	TCGA	2 cut(s)	194, 936
TasI	AATT	6 cut(s)	899, 1100, 1140, 1173, 1205, 1228
TfiI	GAWTC	3 cut(s)	80, 367, 1130
Tru1I	TTAA	3 cut(s)	245, 443, 876
Tru9I	TTAA	3 cut(s)	245, 443, 876
TscAI	CASTG	1 cut(s)	1227
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	196, 359, 519, 1185
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	1227
VneI	GTGCAC	1 cut(s)	883
XapI	RAATTY	4 cut(s)	1100, 1140, 1205, 1228
XceI	RCATGY	2 cut(s)	478, 515
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	2 cut(s)	840, 863
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.