Rmu_co8294091.1_g000001

Monodehydroascorbate reductase, seedling isozyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8294091.1
OG0013840
Physical Location & Seq
Forward (+)
1 .. 878
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8294091.1_g000001.1.cds

Sequence Viewer

Length: 635 bp
gaacttacctatggcattgttgaagccaattactgaaagaatactagtcatatgggctctgattactagctggttgaagtatcaaagaaaccgtgaaggaaatatggaacttctgaacagattgttagaagagctcgatagccaaactgcagatatagagcaaaagctagactctgagcctcctcatccaatcaaaagacaagaagatgaagtctatgagtggttggaaaatgtggaaaggatcaaaactgaagtgcaaaccatttaccaaatcgctgaaaggaactatctctcaccggaacatttcgggaagcttgttaatgaaaaaattgtagaggttaaggagttgctccaggaaggaaaattgtacactgggatttccgaggagaagagtttcaagtacttgatcattggtggtggagttgcagctggatatgcagccagggagtttgtcaaacaagggctcaagccaggtgagttagcaatcatatcaaaagaagcagtggcgccttatgaacgtcctgcgcttagtaaggcctacctgtttcctgagggagctgtaagacttccagggttcaatgtctgcgttggaagtggaggtgagaggctgctacctgagtggtatgtggagaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Pyr_redox_2

Protein Analysis

211

Amino Acids

24.12

Weight (kDa)

5.24

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09940 AT3G09940 AT5G03630
fragaria_vesca FvH4_3g20880
malus_domestica MD11G1237900.v1.1
prunus_persica Prupe.4G189300_v2.0.a1
pyrus_communis pycom03g16900 pycom11g20930
rosa_chinensis RchiOBHm_Chr5g0035251
rosa_laevigata RLG00000033613
rosa_multiflora Rmu_co8294091.1_g000001 Rmu_sc0007948.1_g000003
rosa_rugosa Rorug05G0151000
rosa_samantha Rh5BG243400 Rh5CG275100 Rh5DG252600
rosa_wichuraiana Rw5G022280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 506
AclWI GGATC 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 2 cut(s) 369, 402
AgsI TTSAA 4 cut(s) 23, 77, 398, 578
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 4 cut(s) 352, 441, 470, 569
AluBI AGCT 6 cut(s) 70, 134, 167, 314, 429, 558
AluI AGCT 6 cut(s) 70, 134, 167, 314, 429, 558
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 1 cut(s) 249
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 3 cut(s) 426, 438, 608
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 509, 527
AsuHPI GGTGA 3 cut(s) 286, 486, 612
AxyI CCTNAGG 1 cut(s) 550
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 3 cut(s) 59, 136, 466
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 3 cut(s) 438, 450, 595
BciT130I CCWGG 4 cut(s) 354, 443, 472, 571
BclI TGATCA 1 cut(s) 406
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 3 cut(s) 45, 67, 168
BfmI CTRYAG 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 510
BisI GCNGC 3 cut(s) 427, 439, 609
BlsI GCNGC 3 cut(s) 428, 440, 610
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 4 cut(s) 354, 443, 472, 571
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 4 cut(s) 354, 443, 472, 571
BmrI ACTGGG 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 3 cut(s) 382, 442, 570
BsaWI WCCGGW 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 550
BseBI CCWGG 4 cut(s) 354, 443, 472, 571
BseDI CCNNGG 3 cut(s) 382, 442, 570
BseGI GGATG 1 cut(s) 185
BseMII CTCAG 3 cut(s) 166, 541, 607
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 172, 399
BseXI GCAGC 3 cut(s) 438, 450, 595
BshFI GGCC 1 cut(s) 537
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 297
BsnI GGCC 1 cut(s) 537
Bsp1286I GDGCHC 3 cut(s) 59, 136, 466
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 2 cut(s) 241, 406
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 3 cut(s) 167, 542, 608
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 1 cut(s) 152
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 382, 442, 570
BssMI GATC 2 cut(s) 241, 406
BssNI GRCGYC 1 cut(s) 507
Bst2UI CCWGG 4 cut(s) 354, 443, 472, 571
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 124, 384
BstACI GRCGYC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 175, 528, 550, 616
BstF5I GGATG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 509, 527
BstKTI GATC 2 cut(s) 244, 409
BstMBI GATC 2 cut(s) 241, 406
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 4 cut(s) 354, 443, 472, 571
BstSCI CCNGG 4 cut(s) 352, 441, 470, 569
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 438, 450, 595
Bsu36I CCTNAGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 537
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 2 cut(s) 370, 508
CfoI GCGC 2 cut(s) 509, 527
Csp6I GTAC 2 cut(s) 368, 401
CviQI GTAC 2 cut(s) 368, 401
DdeI CTNAG 4 cut(s) 175, 528, 550, 616
DinI GGCGCC 1 cut(s) 508
DpnI GATC 2 cut(s) 243, 408
DpnII GATC 2 cut(s) 241, 406
Eam1104I CTCTTC 2 cut(s) 124, 384
EarI CTCTTC 2 cut(s) 124, 384
Ecl136II GAGCTC 1 cut(s) 134
Eco147I AGGCCT 1 cut(s) 537
Eco24I GRGCYC 3 cut(s) 59, 136, 466
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 550
EcoICRI GAGCTC 1 cut(s) 134
EcoRII CCWGG 4 cut(s) 352, 441, 470, 569
EcoT38I GRGCYC 3 cut(s) 59, 136, 466
EgeI GGCGCC 1 cut(s) 508
EheI GGCGCC 1 cut(s) 508
FauNDI CATATG 1 cut(s) 51
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 427, 439, 609
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 3 cut(s) 59, 136, 466
Fsp4HI GCNGC 3 cut(s) 427, 439, 609
FspBI CTAG 3 cut(s) 45, 67, 168
GlaI GCGC 2 cut(s) 508, 526
GluI GCNGC 3 cut(s) 427, 439, 609
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 1 cut(s) 537
HapII CCGG 1 cut(s) 297
HhaI GCGC 2 cut(s) 509, 527
Hin1I GRCGYC 1 cut(s) 507
Hin6I GCGC 2 cut(s) 507, 525
HinP1I GCGC 2 cut(s) 507, 525
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 1 cut(s) 171
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 286, 486, 612
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 4 cut(s) 61, 115, 176, 383
Hpy188III TCNNGA 2 cut(s) 308, 549
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 90, 351
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 4 cut(s) 150, 257, 426, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 4 cut(s) 175, 528, 550, 616
HpySE526I ACGT 1 cut(s) 518
Hsp92I GRCGYC 1 cut(s) 507
HspAI GCGC 2 cut(s) 507, 525
KasI GGCGCC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 2 cut(s) 241, 406
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 355, 555
Lsp1109I GCAGC 3 cut(s) 438, 450, 595
MaeI CTAG 3 cut(s) 45, 67, 168
MaeII ACGT 1 cut(s) 518
MalI GATC 2 cut(s) 243, 408
MboI GATC 2 cut(s) 241, 406
MboII GAAGA 3 cut(s) 141, 216, 401
MhlI GDGCHC 3 cut(s) 59, 136, 466
MluCI AATT 3 cut(s) 28, 328, 363
Mly113I GGCGCC 1 cut(s) 507
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 2 cut(s) 205, 569
MnlI CCTC 7 cut(s) 190, 193, 329, 377, 545, 591, 598
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 319, 340
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 4 cut(s) 354, 443, 472, 571
MvaI CCWGG 4 cut(s) 354, 443, 472, 571
MwoI GCNNNNNNNGC 1 cut(s) 435
NarI GGCGCC 1 cut(s) 507
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 241, 406
NlaIV GGNNCC 1 cut(s) 508
PceI AGGCCT 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 393
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 3 cut(s) 428, 440, 610
PleI GAGTC 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 136
Psp6I CCWGG 4 cut(s) 352, 441, 470, 569
PspGI CCWGG 4 cut(s) 352, 441, 470, 569
PspN4I GGNNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 429
RsaI GTAC 2 cut(s) 369, 402
RsaNI GTAC 2 cut(s) 368, 401
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 319, 340
SatI GCNGC 3 cut(s) 427, 439, 609
Sau3AI GATC 2 cut(s) 241, 406
ScaI AGTACT 1 cut(s) 402
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 4 cut(s) 354, 443, 472, 571
SduI GDGCHC 3 cut(s) 59, 136, 466
SfcI CTRYAG 1 cut(s) 148
SfoI GGCGCC 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 3 cut(s) 28, 328, 363
SseBI AGGCCT 1 cut(s) 537
SspDI GGCGCC 1 cut(s) 506
SspMI CTAG 3 cut(s) 45, 67, 168
SstI GAGCTC 1 cut(s) 136
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 352, 441, 470, 569
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 521
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 28, 328, 363
TatI WGTACW 2 cut(s) 367, 400
Tru1I TTAA 2 cut(s) 319, 340
Tru9I TTAA 2 cut(s) 319, 340
TscAI CASTG 2 cut(s) 377, 508
TseI GCWGC 3 cut(s) 426, 438, 608
TspDTI ATGAA 3 cut(s) 223, 337, 529
TspRI CASTG 2 cut(s) 377, 508
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 3 cut(s) 45, 67, 168
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.