Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013840

Physical Location & Seq

Genomic Coordinates Forward (+)

13974513 .. 13976893

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTGCAGTCACCTCCTCTTCTCTCTTGAGGAACTGTGCAGCAACAACTGTTAGAGCTTTTGTGACTGTGAAAGCCTCCAATTCCAATTTCAGAACTTTCCTTCTTCCTCCTCACTCTCGCAGGTCCCTGTGTCGTGTTAGCGCTACAAACAATGAAGAGGCTGCTGCCAAGGTAGCTGCAGCAAATGCCGACAGTGGAGCTCCAACAATATTTGACAAGATCATAGCAAAGGAAATCCCATCGACCATTGTATACGAGGATGATAAGGTCCTGGCATTTCGGGATATCAACCCACAGGCTCCTGTGCATGTTGTTATCATCCCAAAGAATAGGGATGGGTTAACAGAGCTGGGAAAGGCTGAATCTAGGCATGTGGAAATATTGGGTCAACTTCTGTATGCTGCAAAAAAAGTTGCTGAGAAAGAAGGTATTCTTCACGGGTTTCGTGTGGTTATCAACAATGGTCCAGAGGGATGTCAATCTGTTTATCATCTCCACTTGCATCTCCTTGGTGGGAGACAGATGAAATGGCCACCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 map00053 map01100

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

181

Amino Acids

19.63

Weight (kDa)

9.4

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	70 - 172	4.1e-23	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	78 - 175	5.2e-28	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09940 AT3G09940 AT5G03630
fragaria_vesca	FvH4_3g20880
malus_domestica	MD11G1237900.v1.1
prunus_persica	Prupe.4G189300_v2.0.a1
pyrus_communis	pycom03g16900 pycom11g20930
rosa_chinensis	RchiOBHm_Chr5g0035251
rosa_laevigata	RLG00000033613
rosa_multiflora	Rmu_co8294091.1_g000001 Rmu_sc0007948.1_g000003
rosa_rugosa	Rorug05G0151000
rosa_samantha	Rh5BG243400 Rh5CG275100 Rh5DG252600
rosa_wichuraiana	Rw5G022280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	533
AfeI	AGCGCT	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	273, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	59, 179, 203, 352
AluI	AGCT	4 cut(s)	59, 179, 203, 352
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	533
ApeKI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	126, 271, 467
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	3 cut(s)	126, 271, 467
BalI	TGGCCA	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BccI	CCATC	2 cut(s)	250, 332
BciT130I	CCWGG	2 cut(s)	275, 540
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	6, 180
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
BlsI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
Bme1390I	CCNGG	2 cut(s)	275, 540
Bme18I	GGWCC	3 cut(s)	126, 271, 467
BmgT120I	GGNCC	3 cut(s)	126, 271, 467
BmiI	GGNNCC	2 cut(s)	128, 303
BmrFI	CCNGG	2 cut(s)	275, 540
BmsI	GCATC	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	171, 511
Bse8I	GATNNNNATC	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	275, 540
BseDI	CCNNGG	2 cut(s)	171, 511
BseGI	GGATG	4 cut(s)	268, 321, 343, 482
BseJI	GATNNNNATC	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	7, 102
BseXI	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	128, 303
BspMAI	CTGCAG	2 cut(s)	10, 184
BspMI	ACCTGC	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	171, 511
BssMI	GATC	1 cut(s)	222
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	171, 511
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	275, 540
Bst4CI	ACNGT	4 cut(s)	38, 52, 70, 197
Bst6I	CTCTTC	2 cut(s)	25, 153
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	268, 321, 343, 482
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstNI	CCWGG	2 cut(s)	275, 540
BstNSI	RCATGY	2 cut(s)	314, 377
BstSCI	CCNGG	2 cut(s)	273, 538
BstSFI	CTRYAG	2 cut(s)	6, 180
BstV1I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
BstZ17I	GTATAC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	535
BtsCI	GGATG	4 cut(s)	268, 321, 343, 482
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	126, 271, 467
CsiI	ACCWGGT	1 cut(s)	538
CviAII	CATG	2 cut(s)	311, 374
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	25, 153
EarI	CTCTTC	2 cut(s)	25, 153
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	171, 511
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	126, 271, 467
Eco47III	AGCGCT	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	2 cut(s)	126, 271
EcoRII	CCWGG	2 cut(s)	273, 538
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	171, 511
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	171, 511
FaeI	CATG	2 cut(s)	314, 377
FaiI	YATR	5 cut(s)	227, 256, 312, 375, 402
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	310, 373
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FokI	GGATG	4 cut(s)	275, 308, 350, 489
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	314, 377
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	345, 392
HindII	GTYRAC	2 cut(s)	345, 392
HinfI	GANTC	1 cut(s)	365
HpaI	GTTAAC	1 cut(s)	345
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	3 cut(s)	256, 345, 392
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	3 cut(s)	28, 284, 470
Hpy8I	GTNNAC	3 cut(s)	256, 345, 392
HpyAV	CCTTC	2 cut(s)	113, 422
HpyCH4III	ACNGT	4 cut(s)	38, 52, 70, 197
HpyCH4V	TGCA	6 cut(s)	8, 41, 182, 310, 407, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	314, 377
HspAI	GCGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	200, 208, 307
LpnPI	CCDG	9 cut(s)	109, 143, 260, 284, 287, 318, 338, 483, 525
Lsp1109I	GCAGC	6 cut(s)	53, 151, 154, 166, 194, 391
LweI	GCATC	1 cut(s)	514
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	10, 64
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	4 cut(s)	12, 98, 170, 428
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	535
MluCI	AATT	2 cut(s)	82, 88
MluNI	TGGCCA	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	24, 25, 28, 88, 120, 123, 154, 253, 466
Mox20I	TGGCCA	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	535
MseI	TTAA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	275, 540
MvaI	CCWGG	2 cut(s)	275, 540
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	314, 377
NlaIV	GGNNCC	2 cut(s)	128, 303
NmuCI	GTSAC	2 cut(s)	10, 64
NspI	RCATGY	2 cut(s)	314, 377
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	7, 43, 166, 169, 181, 184, 406
PpuMI	RGGWCCY	2 cut(s)	126, 271
Psp124BI	GAGCTC	1 cut(s)	205
Psp5II	RGGWCCY	2 cut(s)	126, 271
Psp6I	CCWGG	2 cut(s)	273, 538
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	2 cut(s)	273, 538
PspN4I	GGNNCC	2 cut(s)	128, 303
PspPI	GGNCC	3 cut(s)	126, 271, 467
PspPPI	RGGWCCY	2 cut(s)	126, 271
PstI	CTGCAG	2 cut(s)	10, 184
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	7 cut(s)	6, 42, 165, 168, 180, 183, 405
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	126, 271, 467
ScrFI	CCNGG	2 cut(s)	275, 540
SduI	GDGCHC	1 cut(s)	205
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	2 cut(s)	6, 180
SinI	GGWCC	3 cut(s)	126, 271, 467
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	82, 88
SspI	AATATT	2 cut(s)	213, 384
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	273, 538
StyI	CCWWGG	2 cut(s)	171, 511
TaaI	ACNGT	4 cut(s)	38, 52, 70, 197
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	82, 88
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	10, 64
TseI	GCWGC	7 cut(s)	5, 41, 164, 167, 179, 182, 404
Tsp45I	GTSAC	2 cut(s)	10, 64
TspDTI	ATGAA	2 cut(s)	171, 542
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	3 cut(s)	126, 271, 467
XceI	RCATGY	2 cut(s)	314, 377
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.