Rmu_co8297519.1_g000001

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8297519.1
OG0012422
Physical Location & Seq
Reverse (-)
28 .. 342
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8297519.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgacgacgaccacagaaaacgctgccgtttcacattccgacgcttcttcaatcgccgctgcgctggatccaattaccgccttttcttctctgaagcggaagcgaccgccgaagattgagatcccaaacgtcctgcaagaaattaaaaccgagaagcagcgtgacctggcgccgcgaaacggcgtcgtttgcttcagtgggatcggagttggggtctcctccgccaaaggcaagaagaagtttatggaagacgcgcataagattgtttcttgcttacaaggcaactcaaagagagtaagcaatcaatcaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868 PP2C

Protein Analysis

104

Amino Acids

11.12

Weight (kDa)

9.8

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67820 AT1G67820
fragaria_vesca FvH4_4g25730
malus_domestica MD13G1099500.v1.1
prunus_persica Prupe.1G246400_v2.0.a1
pyrus_communis pycom13g08690
rosa_chinensis RchiOBHm_Chr4g0433171
rosa_laevigata RLG00000006777
rosa_multiflora Rmu_co8297519.1_g000001 Rmu_sc0000957.1_g000012 Rmu_ssc0000295.1_g000013
rosa_roxburghii Rroxscaffold_5G00374660
rosa_rugosa Rorug04G0266500
rosa_samantha Rh4AG320200 Rh4BG328400 Rh4CG343800 Rh4DG323800
rosa_wichuraiana Rw0G008700 Rw4G027800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 2 cut(s) 175, 254
AciI CCGC 6 cut(s) 57, 78, 97, 107, 173, 222
AclWI GGATC 4 cut(s) 62, 75, 115, 209
AcuI CTGAAG 2 cut(s) 113, 178
AcyI GRCGYC 2 cut(s) 170, 183
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 4 cut(s) 62, 75, 115, 209
ApeKI GCWGC 3 cut(s) 23, 59, 157
AspLEI GCGC 3 cut(s) 64, 172, 256
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 10, 46, 169
BceAI ACGGC 2 cut(s) 11, 196
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 5 cut(s) 24, 57, 60, 158, 173
BlsI GCNGC 5 cut(s) 25, 58, 61, 159, 174
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 69, 171
BmrFI CCNGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 170, 183
BsaI GGTCTC 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 3 cut(s) 10, 46, 169
Bsh1236I CGCG 2 cut(s) 175, 254
Bsh1285I CGRYCG 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 169
BsiEI CGRYCG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 67, 120, 201
BspACI CCGC 6 cut(s) 57, 78, 97, 107, 173, 222
BspFNI CGCG 2 cut(s) 175, 254
BspLI GGNNCC 2 cut(s) 69, 171
BspPI GGATC 4 cut(s) 62, 75, 115, 209
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 220
BssMI GATC 3 cut(s) 67, 120, 201
BssNI GRCGYC 2 cut(s) 170, 183
Bst2UI CCWGG 1 cut(s) 167
BstACI GRCGYC 2 cut(s) 170, 183
BstFNI CGCG 2 cut(s) 175, 254
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 3 cut(s) 64, 172, 256
BstKTI GATC 3 cut(s) 70, 123, 204
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 67, 120, 201
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 189, 279
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 2 cut(s) 175, 254
BstV1I GCAGC 3 cut(s) 10, 46, 169
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 67, 120
BstYI RGATCY 2 cut(s) 67, 120
BtsIMutI CAGTG 1 cut(s) 202
CfoI GCGC 3 cut(s) 64, 172, 256
CseI GACGC 3 cut(s) 50, 172, 260
DinI GGCGCC 1 cut(s) 171
DpnI GATC 3 cut(s) 69, 122, 203
DpnII GATC 3 cut(s) 67, 120, 201
EciI GGCGGA 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 113, 178
EcoRII CCWGG 1 cut(s) 165
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
FaiI YATR 2 cut(s) 245, 258
Fnu4HI GCNGC 5 cut(s) 24, 57, 60, 158, 173
Fsp4HI GCNGC 5 cut(s) 24, 57, 60, 158, 173
GlaI GCGC 3 cut(s) 63, 171, 255
GluI GCNGC 5 cut(s) 24, 57, 60, 158, 173
HaeII RGCGCY 1 cut(s) 173
HgaI GACGC 3 cut(s) 50, 172, 260
HhaI GCGC 3 cut(s) 64, 172, 256
Hin1I GRCGYC 2 cut(s) 170, 183
Hin6I GCGC 3 cut(s) 62, 170, 254
HinP1I GCGC 3 cut(s) 62, 170, 254
Hpy188I TCNGA 3 cut(s) 40, 93, 206
Hpy99I CGWCG 3 cut(s) 10, 44, 188
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 279
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 2 cut(s) 170, 183
HspAI GCGC 3 cut(s) 62, 170, 254
KasI GGCGCC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 67, 120, 201
LpnPI CCDG 4 cut(s) 50, 146, 152, 179
Lsp1109I GCAGC 3 cut(s) 10, 46, 169
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 161
MalI GATC 3 cut(s) 69, 122, 203
MboI GATC 3 cut(s) 67, 120, 201
MboII GAAGA 5 cut(s) 39, 78, 124, 247, 260
MflI RGATCY 2 cut(s) 67, 120
MluCI AATT 3 cut(s) 72, 141, 309
Mly113I GGCGCC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 1 cut(s) 229
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 175, 254
MwoI GCNNNNNNNGC 2 cut(s) 189, 279
NarI GGCGCC 1 cut(s) 170
NdeII GATC 3 cut(s) 67, 120, 201
NlaIV GGNNCC 2 cut(s) 69, 171
NmuCI GTSAC 1 cut(s) 161
PkrI GCNGC 5 cut(s) 25, 58, 61, 159, 174
PluTI GGCGCC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 69, 171
PsuI RGATCY 2 cut(s) 67, 120
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 5 cut(s) 24, 57, 60, 158, 173
Sau3AI GATC 3 cut(s) 67, 120, 201
ScrFI CCNGG 1 cut(s) 167
SetI ASST 2 cut(s) 132, 168
SfoI GGCGCC 1 cut(s) 171
Sse9I AATT 3 cut(s) 72, 141, 309
SsiI CCGC 6 cut(s) 57, 78, 97, 107, 173, 222
SspDI GGCGCC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 132
TasI AATT 3 cut(s) 72, 141, 309
TauI GCSGC 2 cut(s) 59, 175
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 3 cut(s) 23, 59, 157
Tsp45I GTSAC 1 cut(s) 161
TspRI CASTG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.