Rorug04G0266500

Protein phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
43876535 .. 43879344
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0266500.1

Sequence Viewer

Length: 960 bp
ATGGAGGGAATAGAGCACAGGACGGTCAAAGTCAACGGGATCAACATGCACGTAGCCGAGAAGGGTCAAGGCCCGGTGATCCTCTTCATCCACGGCTTCCCGGAGCTGTGGTACACCTGGAGGCACCAAATCCAGGCCTTGGCCTCGCTCGGCTACCGAGCCGTGGCGCCGGACCTCCGCGGCTACGGCGACACGGACGCGCCCGCCGACCCGTCTAGCTACACGTACTTCCACGTGGTGGGTGATCTGGTGGCGCTGTTGGACGCCGTAGCCGCGGATCAGGAGAAGGTGTTCGTGGTCGGGCACGACTGGGGTGCGCTCATCGCTTGGTATTTTTGCCTGTTTCGGCCGGACCGGGTTAAGGCTCTGGTCAACATGAGCGTGGCGTTCACTCCTAGAAATCCTCAGAGGAAGACTCTTGAAACCTTGAGAGCTGTTTATGGGGATGACTATTACATGTGCAGATTTCAGGAACCAGGAGAGATTGAAGCTGAGTTTGCCCAGATTGGTACTGCAAGAGTTATGAAGGAATTTCTAACATATCGCCATCCTGGTCCACTTTTCCTGCCTAAAGGTAAAGGCTTTGGACATCCCCCAGATGCTCCAATTCCCTTGCCAAGTTGGTTGTCTGAGGATGATGTTAACTACTATGCCAGCTTCTTCGAGAAGACGGGATTCACTGGTGGCATAAATTACTATCGAAACTTGGATCGAAACTGGGAACTGACGGCACCCTGGACTGGGGCTCAAATAAAAGTTCCAGTTAAGTTCATTGTGGGGGACCAAGACCTAGTTTATAATTCAGTAGGCGGCAAGGATTTCATACACAAAGGTGGTTTGAAGAAGTATGTGCCGTTTCTAGAAGAGGTAGTCGTAATGGAAGGAGTTGCCCATTTTATCAACGAAGAAAGGCCTAAAGAAATTAGTGTACACATCCATGACTTCATCAAGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

36.22

Weight (kDa)

6.06

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chlorophyllase PF07224 19 - 114 6.9e-07 Chlorophyllase
Abhydrolase_1 PF00561 25 - 304 4.4e-27 alpha/beta hydrolase fold
Hydrolase_4 PF12146 26 - 145 3.6e-14 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 27 - 308 3.1e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012422)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 3 cut(s) 123, 166, 730
AccB7I CCANNNNNTGG 2 cut(s) 139, 238
AccII CGCG 3 cut(s) 180, 200, 275
AciI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
AclWI GGATC 4 cut(s) 47, 73, 285, 717
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 2 cut(s) 530, 953
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 167, 264
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 4 cut(s) 113, 227, 511, 930
AfiI CCNNNNNNNGG 7 cut(s) 133, 139, 163, 238, 361, 740, 741
AflIII ACRYGT 2 cut(s) 222, 456
AgsI TTSAA 3 cut(s) 422, 488, 841
AjnI CCWGG 5 cut(s) 116, 132, 475, 550, 734
AleI CACNNNNGTG 1 cut(s) 831
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 106, 219, 434, 491, 657
AluI AGCT 5 cut(s) 106, 219, 434, 491, 657
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 4 cut(s) 47, 73, 285, 717
AoxI GGCC 5 cut(s) 70, 135, 141, 347, 911
ApoI RAATTY 2 cut(s) 530, 953
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 4 cut(s) 169, 202, 256, 319
AspS9I GGNCC 5 cut(s) 71, 172, 352, 554, 781
AsuC2I CCSGG 3 cut(s) 74, 101, 356
AsuHPI GGTGA 2 cut(s) 88, 254
AvaII GGWCC 4 cut(s) 172, 352, 554, 781
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 3 cut(s) 123, 166, 730
BanII GRGCYC 1 cut(s) 748
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 419, 674
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 1 cut(s) 555
BceAI ACGGC 6 cut(s) 109, 146, 202, 251, 744, 838
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 5 cut(s) 118, 134, 477, 552, 736
BcnI CCSGG 3 cut(s) 74, 101, 356
BfaI CTAG 5 cut(s) 216, 396, 791, 860, 958
BfoI RGCGCY 2 cut(s) 170, 257
BisI GCNGC 3 cut(s) 181, 273, 811
BlsI GCNGC 3 cut(s) 182, 274, 812
Bme1390I CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
Bme18I GGWCC 4 cut(s) 172, 352, 554, 781
BmgT120I GGNCC 5 cut(s) 71, 172, 352, 554, 781
BmiI GGNNCC 5 cut(s) 125, 168, 474, 732, 782
BmrFI CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
BmrI ACTGGG 3 cut(s) 319, 727, 750
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 3 cut(s) 319, 727, 750
BpiI GAAGAC 2 cut(s) 419, 674
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 3 cut(s) 74, 101, 356
BsaAI YACGTR 3 cut(s) 52, 225, 235
BsaHI GRCGYC 2 cut(s) 167, 264
BsaJI CCNNGG 6 cut(s) 91, 138, 162, 178, 273, 734
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 275, 305
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 139, 163, 238, 361, 740, 741
Bse1I ACTGG 5 cut(s) 314, 685, 722, 745, 761
BseBI CCWGG 5 cut(s) 118, 134, 477, 552, 736
BseDI CCNNGG 6 cut(s) 91, 138, 162, 178, 273, 734
BseGI GGATG 6 cut(s) 87, 451, 547, 589, 640, 933
BseLI CCNNNNNNNGG 7 cut(s) 133, 139, 163, 238, 361, 740, 741
BseMII CTCAG 3 cut(s) 419, 483, 621
BseNI ACTGG 5 cut(s) 314, 685, 722, 745, 761
BseSI GKGCMC 1 cut(s) 306
BseX3I CGGCCG 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 481
Bsh1236I CGCG 3 cut(s) 180, 200, 275
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 5 cut(s) 72, 137, 143, 349, 913
BshNI GGYRCC 3 cut(s) 123, 166, 730
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 5 cut(s) 74, 101, 170, 350, 355
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 7 cut(s) 133, 139, 163, 238, 361, 740, 741
BsmFI GGGAC 1 cut(s) 794
BsnI GGCC 5 cut(s) 72, 137, 143, 349, 913
Bsp1286I GDGCHC 3 cut(s) 18, 306, 748
Bsp1407I TGTACA 1 cut(s) 928
Bsp143I GATC 5 cut(s) 39, 78, 244, 277, 709
BspACI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
BspANI GGCC 5 cut(s) 72, 137, 143, 349, 913
BspCNI CTCAG 3 cut(s) 418, 484, 622
BspFNI CGCG 3 cut(s) 180, 200, 275
BspLI GGNNCC 5 cut(s) 125, 168, 474, 732, 782
BspPI GGATC 4 cut(s) 47, 73, 285, 717
BspT107I GGYRCC 3 cut(s) 123, 166, 730
BsrGI TGTACA 1 cut(s) 928
BsrI ACTGG 5 cut(s) 314, 685, 722, 745, 761
BssECI CCNNGG 6 cut(s) 91, 138, 162, 178, 273, 734
BssMI GATC 5 cut(s) 39, 78, 244, 277, 709
BssNI GRCGYC 2 cut(s) 167, 264
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 5 cut(s) 118, 134, 477, 552, 736
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 2 cut(s) 89, 858
BstACI GRCGYC 2 cut(s) 167, 264
BstAUI TGTACA 1 cut(s) 928
BstBAI YACGTR 3 cut(s) 52, 225, 235
BstC8I GCNNGC 2 cut(s) 204, 655
BstDEI CTNAG 3 cut(s) 405, 492, 630
BstDSI CCRYGG 4 cut(s) 91, 162, 178, 273
BstF5I GGATG 6 cut(s) 87, 451, 547, 589, 640, 933
BstFNI CGCG 3 cut(s) 180, 200, 275
BstH2I RGCGCY 2 cut(s) 170, 257
BstHHI GCGC 4 cut(s) 169, 202, 256, 319
BstKTI GATC 5 cut(s) 42, 81, 247, 280, 712
BstMBI GATC 5 cut(s) 39, 78, 244, 277, 709
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 186, 272, 323, 497
BstNI CCWGG 5 cut(s) 118, 134, 477, 552, 736
BstNSI RCATGY 2 cut(s) 49, 460
BstSCI CCNGG 8 cut(s) 72, 99, 116, 132, 354, 475, 550, 734
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 3 cut(s) 180, 200, 275
BstV2I GAAGAC 2 cut(s) 419, 674
BstZI CGGCCG 1 cut(s) 347
BsuRI GGCC 5 cut(s) 72, 137, 143, 349, 913
BtgI CCRYGG 4 cut(s) 91, 162, 178, 273
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 6 cut(s) 87, 451, 547, 589, 640, 933
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 2 cut(s) 204, 655
CfoI GCGC 4 cut(s) 169, 202, 256, 319
Cfr13I GGNCC 5 cut(s) 71, 172, 352, 554, 781
Cfr42I CCGCGG 2 cut(s) 181, 276
CpoI CGGWCCG 1 cut(s) 352
CseI GACGC 2 cut(s) 206, 272
Csp6I GTAC 4 cut(s) 112, 226, 510, 929
CspI CGGWCCG 1 cut(s) 352
CviAII CATG 4 cut(s) 46, 376, 457, 938
CviQI GTAC 4 cut(s) 112, 226, 510, 929
DdeI CTNAG 3 cut(s) 405, 492, 630
DinI GGCGCC 1 cut(s) 168
DpnI GATC 5 cut(s) 41, 80, 246, 279, 711
DpnII GATC 5 cut(s) 39, 78, 244, 277, 709
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 347
EagI CGGCCG 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 89, 858
EarI CTCTTC 2 cut(s) 89, 858
EclXI CGGCCG 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 2 cut(s) 137, 913
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 4 cut(s) 172, 352, 554, 781
Eco52I CGGCCG 1 cut(s) 347
Eco72I CACGTG 1 cut(s) 235
EcoRII CCWGG 5 cut(s) 116, 132, 475, 550, 734
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 748
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 49, 379, 460, 941
FaqI GGGAC 1 cut(s) 794
FatI CATG 4 cut(s) 45, 375, 456, 937
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 181, 273, 811
FokI GGATG 6 cut(s) 74, 458, 534, 576, 647, 920
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 3 cut(s) 181, 273, 811
FspBI CTAG 5 cut(s) 216, 396, 791, 860, 958
GlaI GCGC 4 cut(s) 168, 201, 255, 318
GluI GCNGC 3 cut(s) 181, 273, 811
GsuI CTGGAG 1 cut(s) 139
HaeII RGCGCY 2 cut(s) 170, 257
HaeIII GGCC 5 cut(s) 72, 137, 143, 349, 913
HapII CCGG 5 cut(s) 74, 101, 170, 350, 355
HgaI GACGC 2 cut(s) 206, 272
HhaI GCGC 4 cut(s) 169, 202, 256, 319
Hin1I GRCGYC 2 cut(s) 167, 264
Hin1II CATG 4 cut(s) 49, 379, 460, 941
Hin6I GCGC 4 cut(s) 167, 200, 254, 317
HinP1I GCGC 4 cut(s) 167, 200, 254, 317
HincII GTYRAC 3 cut(s) 34, 373, 643
HindII GTYRAC 3 cut(s) 34, 373, 643
HinfI GANTC 2 cut(s) 415, 675
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 5 cut(s) 74, 101, 170, 350, 355
HphI GGTGA 2 cut(s) 88, 254
Hpy166II GTNNAC 8 cut(s) 34, 114, 373, 390, 557, 643, 929, 931
Hpy188I TCNGA 2 cut(s) 408, 631
Hpy188III TCNNGA 6 cut(s) 281, 419, 470, 664, 860, 949
Hpy8I GTNNAC 8 cut(s) 34, 114, 373, 390, 557, 643, 929, 931
HpyAV CCTTC 4 cut(s) 55, 280, 520, 875
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 3 cut(s) 51, 224, 234
HpyCH4V TGCA 3 cut(s) 49, 462, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 272, 323, 497
HpyF3I CTNAG 3 cut(s) 405, 492, 630
HpySE526I ACGT 3 cut(s) 51, 224, 234
Hsp92I GRCGYC 2 cut(s) 167, 264
Hsp92II CATG 4 cut(s) 49, 379, 460, 941
HspAI GCGC 4 cut(s) 167, 200, 254, 317
KasI GGCGCC 1 cut(s) 166
KspAI GTTAAC 1 cut(s) 643
KspI CCGCGG 2 cut(s) 181, 276
Kzo9I GATC 5 cut(s) 39, 78, 244, 277, 709
LmnI GCTCC 2 cut(s) 103, 607
LweI GCATC 1 cut(s) 589
MaeI CTAG 5 cut(s) 216, 396, 791, 860, 958
MaeII ACGT 3 cut(s) 51, 224, 234
MalI GATC 5 cut(s) 41, 80, 246, 279, 711
MboI GATC 5 cut(s) 39, 78, 244, 277, 709
MboII GAAGA 7 cut(s) 76, 424, 652, 679, 853, 875, 917
MhlI GDGCHC 3 cut(s) 18, 306, 748
MluCI AATT 6 cut(s) 530, 606, 691, 799, 921, 953
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 8 cut(s) 92, 114, 154, 185, 402, 414, 625, 859
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 3 cut(s) 360, 642, 765
MslI CAYNNNNRTG 3 cut(s) 380, 831, 936
MspA1I CMGCKG 2 cut(s) 180, 275
MspI CCGG 5 cut(s) 74, 101, 170, 350, 355
MspR9I CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
MvaI CCWGG 5 cut(s) 118, 134, 477, 552, 736
MvnI CGCG 3 cut(s) 180, 200, 275
MwoI GCNNNNNNNGC 4 cut(s) 186, 272, 323, 497
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 3 cut(s) 74, 101, 356
NdeII GATC 5 cut(s) 39, 78, 244, 277, 709
NlaIII CATG 4 cut(s) 49, 379, 460, 941
NlaIV GGNNCC 5 cut(s) 125, 168, 474, 732, 782
NmeAIII GCCGAG 2 cut(s) 82, 129
NspI RCATGY 2 cut(s) 49, 460
OliI CACNNNNGTG 1 cut(s) 831
PceI AGGCCT 2 cut(s) 137, 913
PciI ACATGT 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 675
PflMI CCANNNNNTGG 2 cut(s) 139, 238
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 3 cut(s) 182, 274, 812
PleI GAGTC 1 cut(s) 409
PluTI GGCGCC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 1 cut(s) 409
Ppu21I YACGTR 3 cut(s) 52, 225, 235
PscI ACATGT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 5 cut(s) 116, 132, 475, 550, 734
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 5 cut(s) 116, 132, 475, 550, 734
PspN4I GGNNCC 5 cut(s) 125, 168, 474, 732, 782
PspPI GGNCC 5 cut(s) 71, 172, 352, 554, 781
RsaI GTAC 4 cut(s) 113, 227, 511, 930
RsaNI GTAC 4 cut(s) 112, 226, 510, 929
RseI CAYNNNNRTG 3 cut(s) 380, 831, 936
Rsr2I CGGWCCG 1 cut(s) 352
RsrII CGGWCCG 1 cut(s) 352
SacII CCGCGG 2 cut(s) 181, 276
SaqAI TTAA 3 cut(s) 360, 642, 765
SatI GCNGC 3 cut(s) 181, 273, 811
Sau3AI GATC 5 cut(s) 39, 78, 244, 277, 709
Sau96I GGNCC 5 cut(s) 71, 172, 352, 554, 781
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
SduI GDGCHC 3 cut(s) 18, 306, 748
SfaNI GCATC 1 cut(s) 589
SfoI GGCGCC 1 cut(s) 168
Sfr303I CCGCGG 2 cut(s) 181, 276
SgrBI CCGCGG 2 cut(s) 181, 276
SinI GGWCC 4 cut(s) 172, 352, 554, 781
SmiMI CAYNNNNRTG 3 cut(s) 380, 831, 936
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 6 cut(s) 530, 606, 691, 799, 921, 953
SseBI AGGCCT 2 cut(s) 137, 913
SsiI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 5 cut(s) 216, 396, 791, 860, 958
StuI AGGCCT 2 cut(s) 137, 913
StyD4I CCNGG 8 cut(s) 72, 99, 116, 132, 354, 475, 550, 734
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 3 cut(s) 54, 227, 237
TaqI TCGA 3 cut(s) 663, 700, 712
TasI AATT 6 cut(s) 530, 606, 691, 799, 921, 953
TatI WGTACW 1 cut(s) 928
TauI GCSGC 3 cut(s) 183, 275, 813
TfiI GAWTC 1 cut(s) 675
Tru1I TTAA 3 cut(s) 360, 642, 765
Tru9I TTAA 3 cut(s) 360, 642, 765
TscAI CASTG 1 cut(s) 685
TspDTI ATGAA 5 cut(s) 76, 539, 760, 811, 934
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 685
Van91I CCANNNNNTGG 2 cut(s) 139, 238
VpaK11BI GGWCC 4 cut(s) 172, 352, 554, 781
XapI RAATTY 2 cut(s) 530, 953
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 49, 460
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 5 cut(s) 216, 396, 791, 860, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.