Rmu_sc0000957.1_g000012

Protein phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000957.1
OG0012422
Physical Location & Seq
Reverse (-)
69015 .. 75479
6465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000957.1_g000012.1.cds

Sequence Viewer

Length: 1110 bp
atgacgacgaccacagaaaacgctgccgtttcacattccgacgcttcttcaatcgccgctgcgctggatccaattaccgccttttcttctctgaagcggaagcgaccgccgaagattgagatcccaaacgtcctgcaagaaattaaaaccgagaagcagcgtgacctggcgccgcgaaacggcgtcgtttgcttcagtgggatcggagttggggtctcctccgccaaaggcaagaagaagtttatggaagacgcgcataagattgtttcttgcttacaaggcaactcaaagagaggtttctttggggtttatgatgggcatggtggtagtaaggctgcagagtttgctgctgagaatttgcacactaacgttcttgaaatgatggaagcttgtgcagaaaaagaagaggcctttagagctgggtatctgaaaacagaccacgagttcttgaaacagggtgtagggagtggtacctgctgtgtaactgccttggtcgatgagcaggaggtggttatttcgaacgtgggagattgtagggctgttctctccagaggtggagtggccgaagcacttacaagagatcatactgcggcacaggagggcgaacgccaaagaatacaggataagggaggatatgtggagttccacagaggagcatggagggtccatggggttctttctgtttcaagaagcataggagatgctcatctgaagagctgggtactgggtgagcctgaaacaaatgtcttacagctgactccagatatggattttgttgtcttagcctcggatggactgtgggaaaagcctgggtcgagcaccggcggcgtccaggaggccatcgaagacgtcgtgtggttgtcgttgtcagcgctggccgagcttgggcgagctgcagcagaatccgagcaaaagtcgacccgcaccagcgaggcagttggacgcgatcgagctcaccggcgagttgcacggaatttgggcgttgcagcagttggacgcggtcgttgtcagagcgacatcggttggacgctgtcgagttcacctgcaagttgcagcggagcctgggcgagaggtcgaacctcgccggagttggagatccgggagcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868 PP2C

Protein Analysis

369

Amino Acids

39.59

Weight (kDa)

6.57

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67820 AT1G67820
fragaria_vesca FvH4_4g25730
malus_domestica MD13G1099500.v1.1
prunus_persica Prupe.1G246400_v2.0.a1
pyrus_communis pycom13g08690
rosa_chinensis RchiOBHm_Chr4g0433171
rosa_laevigata RLG00000006777
rosa_multiflora Rmu_co8297519.1_g000001 Rmu_sc0000957.1_g000012 Rmu_ssc0000295.1_g000013
rosa_roxburghii Rroxscaffold_5G00374660
rosa_rugosa Rorug04G0266500
rosa_samantha Rh4AG320200 Rh4BG328400 Rh4CG343800 Rh4DG323800
rosa_wichuraiana Rw0G008700 Rw4G027800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
AatII GACGTC 1 cut(s) 852
Acc36I ACCTGC 2 cut(s) 482, 1051
Acc65I GGTACC 1 cut(s) 470
AccB1I GGYRCC 2 cut(s) 169, 470
AccI GTMKAC 1 cut(s) 917
AccII CGCG 4 cut(s) 175, 254, 945, 999
AclI AACGTT 1 cut(s) 369
AclWI GGATC 5 cut(s) 62, 75, 115, 209, 1090
AcoI YGGCCR 2 cut(s) 561, 876
AcsI RAATTY 2 cut(s) 355, 973
AcuI CTGAAG 3 cut(s) 113, 178, 731
AcyI GRCGYC 4 cut(s) 170, 183, 828, 849
AfaI GTAC 2 cut(s) 472, 723
AfeI AGCGCT 1 cut(s) 873
AfiI CCNNNNNNNGG 2 cut(s) 179, 885
AgsI TTSAA 4 cut(s) 51, 377, 451, 687
AjnI CCWGG 4 cut(s) 165, 808, 831, 1061
AluBI AGCT 7 cut(s) 389, 419, 717, 754, 883, 893, 953
AluI AGCT 7 cut(s) 389, 419, 717, 754, 883, 893, 953
Alw21I GWGCWC 2 cut(s) 821, 955
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 5 cut(s) 62, 75, 115, 209, 1090
Aor51HI AGCGCT 1 cut(s) 873
AoxI GGCC 4 cut(s) 408, 561, 837, 876
ApeKI GCWGC 9 cut(s) 23, 59, 157, 335, 347, 893, 896, 986, 1053
ApoI RAATTY 2 cut(s) 355, 973
Asp718I GGTACC 1 cut(s) 470
AspLEI GCGC 4 cut(s) 64, 172, 256, 874
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 1 cut(s) 1100
AsuHPI GGTGA 3 cut(s) 740, 947, 1032
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 1 cut(s) 664
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 2 cut(s) 169, 470
BanII GRGCYC 1 cut(s) 955
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 255, 852
Bbv12I GWGCWC 2 cut(s) 821, 955
BbvI GCAGC 9 cut(s) 10, 46, 169, 322, 334, 880, 908, 998, 1065
BccI CCATC 4 cut(s) 308, 376, 785, 848
BceAI ACGGC 2 cut(s) 11, 196
BciT130I CCWGG 4 cut(s) 167, 810, 833, 1063
BcnI CCSGG 1 cut(s) 1100
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 2 cut(s) 336, 894
BfoI RGCGCY 2 cut(s) 173, 875
BfuAI ACCTGC 2 cut(s) 482, 1051
Bme1390I CCNGG 5 cut(s) 167, 810, 833, 1063, 1100
Bme18I GGWCC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 5 cut(s) 69, 171, 472, 665, 1060
BmrFI CCNGG 5 cut(s) 167, 810, 833, 1063, 1100
BmrI ACTGGG 1 cut(s) 734
BmsI GCATC 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 734
BpiI GAAGAC 2 cut(s) 255, 852
BpmI CTGGAG 2 cut(s) 532, 744
Bpu14I TTCGAA 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 1100
BsaBI GATNNNNATC 2 cut(s) 119, 705
BsaHI GRCGYC 4 cut(s) 170, 183, 828, 849
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 5 cut(s) 489, 667, 786, 809, 1062
BsaXI ACNNNNNCTCC 4 cut(s) 198, 228, 621, 651
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 885
Bse118I RCCGGY 2 cut(s) 821, 957
Bse1I ACTGG 1 cut(s) 729
Bse8I GATNNNNATC 2 cut(s) 119, 705
BseBI CCWGG 4 cut(s) 167, 810, 833, 1063
BseDI CCNNGG 5 cut(s) 489, 667, 786, 809, 1062
BseGI GGATG 1 cut(s) 796
BseJI GATNNNNATC 2 cut(s) 119, 705
BseLI CCNNNNNNNGG 2 cut(s) 179, 885
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 2 cut(s) 208, 666
BseXI GCAGC 9 cut(s) 10, 46, 169, 322, 334, 880, 908, 998, 1065
BseYI CCCAGC 2 cut(s) 419, 717
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 4 cut(s) 175, 254, 945, 999
Bsh1285I CGRYCG 3 cut(s) 107, 949, 1003
BshFI GGCC 4 cut(s) 410, 563, 839, 878
BshNI GGYRCC 2 cut(s) 169, 470
BsiEI CGRYCG 3 cut(s) 107, 949, 1003
BsiHKAI GWGCWC 2 cut(s) 821, 955
BsiSI CCGG 4 cut(s) 822, 958, 1085, 1099
BslI CCNNNNNNNGG 2 cut(s) 179, 885
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 4 cut(s) 410, 563, 839, 878
Bso31I GGTCTC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 821, 955
Bsp143I GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
Bsp19I CCATGG 1 cut(s) 667
BspANI GGCC 4 cut(s) 410, 563, 839, 878
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 4 cut(s) 175, 254, 945, 999
BspLI GGNNCC 5 cut(s) 69, 171, 472, 665, 1060
BspMAI CTGCAG 2 cut(s) 340, 898
BspMI ACCTGC 2 cut(s) 482, 1051
BspPI GGATC 5 cut(s) 62, 75, 115, 209, 1090
BspQI GCTCTTC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 2 cut(s) 169, 470
BspTNI GGTCTC 1 cut(s) 220
BsrFI RCCGGY 2 cut(s) 821, 957
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 2 cut(s) 821, 957
BssECI CCNNGG 5 cut(s) 489, 667, 786, 809, 1062
BssMI GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
BssNI GRCGYC 4 cut(s) 170, 183, 828, 849
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 489, 667
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 4 cut(s) 167, 810, 833, 1063
Bst4CI ACNGT 1 cut(s) 798
Bst6I CTCTTC 2 cut(s) 399, 707
BstACI GRCGYC 4 cut(s) 170, 183, 828, 849
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 876, 891
BstDEI CTNAG 2 cut(s) 351, 781
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 1 cut(s) 796
BstFNI CGCG 4 cut(s) 175, 254, 945, 999
BstH2I RGCGCY 2 cut(s) 173, 875
BstHHI GCGC 4 cut(s) 64, 172, 256, 874
BstKTI GATC 6 cut(s) 70, 123, 204, 583, 949, 1098
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
BstMCI CGRYCG 3 cut(s) 107, 949, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 189, 279, 344, 416, 825, 880
BstNI CCWGG 4 cut(s) 167, 810, 833, 1063
BstSCI CCNGG 5 cut(s) 165, 808, 831, 1061, 1098
BstSFI CTRYAG 2 cut(s) 336, 894
BstUI CGCG 4 cut(s) 175, 254, 945, 999
BstV1I GCAGC 9 cut(s) 10, 46, 169, 322, 334, 880, 908, 998, 1065
BstV2I GAAGAC 2 cut(s) 255, 852
BstX2I RGATCY 3 cut(s) 67, 120, 1095
BstYI RGATCY 3 cut(s) 67, 120, 1095
BsuRI GGCC 4 cut(s) 410, 563, 839, 878
BtgI CCRYGG 1 cut(s) 667
BtsCI GGATG 1 cut(s) 796
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 2 cut(s) 482, 1051
Cac8I GCNNGC 2 cut(s) 876, 891
CfoI GCGC 4 cut(s) 64, 172, 256, 874
Cfr10I RCCGGY 2 cut(s) 821, 957
Cfr13I GGNCC 1 cut(s) 664
CseI GACGC 7 cut(s) 50, 172, 260, 817, 951, 1005, 1036
Csp6I GTAC 2 cut(s) 471, 722
CviAII CATG 3 cut(s) 320, 657, 668
CviQI GTAC 2 cut(s) 471, 722
DdeI CTNAG 2 cut(s) 351, 781
DinI GGCGCC 1 cut(s) 171
DpnI GATC 6 cut(s) 69, 122, 203, 582, 948, 1097
DpnII GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
EaeI YGGCCR 2 cut(s) 561, 876
Eam1104I CTCTTC 2 cut(s) 399, 707
EarI CTCTTC 2 cut(s) 399, 707
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 953
Eco130I CCWWGG 2 cut(s) 489, 667
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 955
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 664
Eco47III AGCGCT 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 953
Eco57I CTGAAG 3 cut(s) 113, 178, 731
EcoICRI GAGCTC 1 cut(s) 953
EcoRII CCWGG 4 cut(s) 165, 808, 831, 1061
EcoT14I CCWWGG 2 cut(s) 489, 667
EcoT38I GRGCYC 1 cut(s) 955
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 489, 667
FaeI CATG 3 cut(s) 323, 660, 671
FatI CATG 3 cut(s) 319, 656, 667
FauI CCCGC 1 cut(s) 929
FblI GTMKAC 1 cut(s) 917
FokI GGATG 1 cut(s) 803
FriOI GRGCYC 1 cut(s) 955
GlaI GCGC 4 cut(s) 63, 171, 255, 873
GsaI CCCAGC 2 cut(s) 423, 721
GsuI CTGGAG 2 cut(s) 532, 744
HaeII RGCGCY 2 cut(s) 173, 875
HaeIII GGCC 4 cut(s) 410, 563, 839, 878
HapII CCGG 4 cut(s) 822, 958, 1085, 1099
HgaI GACGC 7 cut(s) 50, 172, 260, 817, 951, 1005, 1036
HhaI GCGC 4 cut(s) 64, 172, 256, 874
Hin1I GRCGYC 4 cut(s) 170, 183, 828, 849
Hin1II CATG 3 cut(s) 323, 660, 671
Hin6I GCGC 4 cut(s) 62, 170, 254, 872
HinP1I GCGC 4 cut(s) 62, 170, 254, 872
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 2 cut(s) 757, 902
HpaII CCGG 4 cut(s) 822, 958, 1085, 1099
HphI GGTGA 3 cut(s) 740, 947, 1032
Hpy166II GTNNAC 2 cut(s) 918, 1040
Hpy188I TCNGA 8 cut(s) 40, 93, 206, 429, 711, 790, 907, 1011
Hpy188III TCNNGA 5 cut(s) 374, 448, 549, 687, 761
Hpy8I GTNNAC 2 cut(s) 918, 1040
Hpy99I CGWCG 4 cut(s) 10, 44, 188, 854
HpyCH4III ACNGT 1 cut(s) 798
HpyCH4IV ACGT 4 cut(s) 129, 369, 522, 849
HpyCH4V TGCA 9 cut(s) 136, 338, 361, 395, 896, 968, 986, 1046, 1053
HpyF10VI GCNNNNNNNGC 6 cut(s) 189, 279, 344, 416, 825, 880
HpyF3I CTNAG 2 cut(s) 351, 781
HpySE526I ACGT 4 cut(s) 129, 369, 522, 849
Hsp92I GRCGYC 4 cut(s) 170, 183, 828, 849
Hsp92II CATG 3 cut(s) 323, 660, 671
HspAI GCGC 4 cut(s) 62, 170, 254, 872
KasI GGCGCC 1 cut(s) 169
KpnI GGTACC 1 cut(s) 474
Kzo9I GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 3 cut(s) 653, 1058, 1102
Lsp1109I GCAGC 9 cut(s) 10, 46, 169, 322, 334, 880, 908, 998, 1065
LweI GCATC 1 cut(s) 691
MaeII ACGT 4 cut(s) 129, 369, 522, 849
MaeIII GTNAC 2 cut(s) 161, 481
MalI GATC 6 cut(s) 69, 122, 203, 582, 948, 1097
MboI GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
MboII GAAGA 8 cut(s) 39, 78, 124, 247, 260, 416, 724, 857
MflI RGATCY 3 cut(s) 67, 120, 1095
MhlI GDGCHC 2 cut(s) 821, 955
MluCI AATT 4 cut(s) 72, 141, 355, 973
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 5 cut(s) 63, 919, 973, 1004, 1071
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 3 cut(s) 59, 754, 1056
MspI CCGG 4 cut(s) 822, 958, 1085, 1099
MspR9I CCNGG 5 cut(s) 167, 810, 833, 1063, 1100
MvaI CCWGG 4 cut(s) 167, 810, 833, 1063
MvnI CGCG 4 cut(s) 175, 254, 945, 999
MwoI GCNNNNNNNGC 6 cut(s) 189, 279, 344, 416, 825, 880
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 1100
NcoI CCATGG 1 cut(s) 667
NdeII GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
NlaIII CATG 3 cut(s) 323, 660, 671
NlaIV GGNNCC 5 cut(s) 69, 171, 472, 665, 1060
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 161
NspV TTCGAA 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 1051
PceI AGGCCT 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 849
PfeI GAWTC 1 cut(s) 902
PflFI GACNNNGTC 2 cut(s) 999, 1030
PfoI TCCNGGA 2 cut(s) 831, 1098
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 1 cut(s) 751
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 955
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 4 cut(s) 165, 808, 831, 1061
PspFI CCCAGC 2 cut(s) 419, 717
PspGI CCWGG 4 cut(s) 165, 808, 831, 1061
PspN4I GGNNCC 5 cut(s) 69, 171, 472, 665, 1060
PspPI GGNCC 1 cut(s) 664
PstI CTGCAG 2 cut(s) 340, 898
PsuI RGATCY 3 cut(s) 67, 120, 1095
PsyI GACNNNGTC 2 cut(s) 999, 1030
PvuI CGATCG 1 cut(s) 949
PvuII CAGCTG 1 cut(s) 754
RsaI GTAC 2 cut(s) 472, 723
RsaNI GTAC 2 cut(s) 471, 722
SacI GAGCTC 1 cut(s) 955
SalI GTCGAC 1 cut(s) 916
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 6 cut(s) 67, 120, 201, 580, 946, 1095
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 5 cut(s) 167, 810, 833, 1063, 1100
SduI GDGCHC 2 cut(s) 821, 955
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 2 cut(s) 336, 894
SfoI GGCGCC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 518
SgrAI CRCCGGYG 2 cut(s) 821, 957
SinI GGWCC 1 cut(s) 664
Sse9I AATT 4 cut(s) 72, 141, 355, 973
SseBI AGGCCT 1 cut(s) 410
SspDI GGCGCC 1 cut(s) 169
SstI GAGCTC 1 cut(s) 955
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 5 cut(s) 165, 808, 831, 1061, 1098
StyI CCWWGG 2 cut(s) 489, 667
TaaI ACNGT 1 cut(s) 798
TaiI ACGT 4 cut(s) 132, 372, 525, 852
TaqI TCGA 8 cut(s) 495, 518, 815, 843, 917, 949, 1034, 1075
TasI AATT 4 cut(s) 72, 141, 355, 973
TauI GCSGC 4 cut(s) 59, 175, 593, 828
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 9 cut(s) 23, 59, 157, 335, 347, 893, 896, 986, 1053
Tsp45I GTSAC 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 1 cut(s) 202
Tth111I GACNNNGTC 2 cut(s) 999, 1030
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 2 cut(s) 355, 973
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 917
ZraI GACGTC 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.