Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314729.1

Orthogroup ID

OG0009033

Physical Location & Seq

Genomic Coordinates Reverse (-)

73 .. 657

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgtataggtgcatcgtgaggtatgggtacaaggacattcaacgggatgatggagactttgagaaccacctcatacaaagcatagcagagttcatccagatggaagccgtggaaccacaattctcaagctctgagaactcgtcattggatggaaggatggctgttataagcaccagaacagtgcaatcaagttcgagcttcatagttactgagcaagaggattttggtgtgagtgactccatccaaagcagcaaatctttaaccctccgcagtcttgggtcagtttatgatgatgagaaccctcaaattaggaggcgccaagtcaggtttcagttaccctcaaaccccggtatggatcatgcagtaagggaagagcttatggatttaatccaggccaaggaagcaggggttgcttatataatggggcattcctatgtgaaggcgaggaggtcatcttcgtgtttgaagaagcttgtgatcgatatggggtattcttttcttaggaagaactgcaggggtccttctgtggcactcaacattcctcacatcagtcttattgaagttggcatgatatactatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

194

Amino Acids

21.98

Weight (kDa)

6.09

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02050
fragaria_vesca	FvH4_6g54410 FvH4_6g54410
malus_domestica	MD09G1001500.v1.1 MD17G1005100.v1.1
prunus_persica	Prupe.3G314700_v2.0.a1 Prupe.3G314700_v2.0.a1
pyrus_communis	pycom17g00130
rosa_chinensis	RchiOBHm_Chr2g0176661
rosa_laevigata	RLG00000022433
rosa_multiflora	Rmu_co8314729.1_g000001 Rmu_co8416913.1_g000001 Rmu_sc0001417.1_g000018 Rmu_sc0012494.1_g000001 Rmu_ssc0000468.1_g000012
rosa_rugosa	Rorug02G0597400
rosa_samantha	Rh2AG674700 Rh2BG685800 Rh2CG649100 Rh2DG700000
rosa_wichuraiana	Rw0G015660 Rw2G055370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	352, 397
AgsI	TTSAA	3 cut(s)	41, 466, 560
AjnI	CCWGG	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 312, 344
AluBI	AGCT	4 cut(s)	129, 198, 376, 472
AluI	AGCT	4 cut(s)	129, 198, 376, 472
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	5 cut(s)	44, 94, 143, 151, 248
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	511
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	348, 392
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	3 cut(s)	114, 317, 519
BmrFI	CCNGG	2 cut(s)	348, 392
BmsI	GCATC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	108, 346, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 397
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	108, 346, 396
BseGI	GGATG	5 cut(s)	52, 93, 154, 162, 240
BseLI	CCNNNNNNNGG	2 cut(s)	352, 397
BseMII	CTCAG	2 cut(s)	123, 201
BseRI	GAGGAG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	352, 397
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	355, 477
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	124, 202
BspDI	ATCGAT	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	114, 317, 519
BspMAI	CTGCAG	1 cut(s)	515
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	108, 346, 396
BssMI	GATC	2 cut(s)	355, 477
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	132, 210, 500
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	5 cut(s)	52, 93, 154, 162, 240
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	358, 480
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	2 cut(s)	355, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 410
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	346, 390
BstSFI	CTRYAG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	52, 93, 154, 162, 240
BtsIMutI	CAGTG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	518
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	2 cut(s)	359, 568
CviJI	RGCY	7 cut(s)	107, 129, 161, 198, 376, 395, 472
CviKI_1	RGCY	7 cut(s)	107, 129, 161, 198, 376, 395, 472
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	132, 210, 500
DinI	GGCGCC	1 cut(s)	317
DpnI	GATC	2 cut(s)	357, 479
DpnII	GATC	2 cut(s)	355, 477
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	317
EheI	GGCGCC	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	362, 571
FatI	CATG	2 cut(s)	358, 567
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	5 cut(s)	59, 80, 161, 169, 227
Fsp4HI	GCNGC	1 cut(s)	250
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	348
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	362, 571
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	16, 97
HpyAV	CCTTC	3 cut(s)	147, 433, 531
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	12, 184, 362, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 410
HpyF3I	CTNAG	3 cut(s)	132, 210, 500
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	362, 571
HspAI	GCGC	1 cut(s)	316
KasI	GGCGCC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	355, 477
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	8 cut(s)	110, 187, 310, 361, 377, 390, 404, 499
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	205, 233, 333
MalI	GATC	2 cut(s)	357, 479
MboI	GATC	2 cut(s)	355, 477
MboII	GAAGA	4 cut(s)	383, 447, 478, 517
MluCI	AATT	2 cut(s)	119, 306
Mly113I	GGCGCC	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	260, 386
MslI	CAYNNNNRTG	3 cut(s)	98, 432, 457
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	348, 392
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	401, 410
NarI	GGCGCC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	355, 477
NlaIII	CATG	2 cut(s)	362, 571
NlaIV	GGNNCC	3 cut(s)	114, 317, 519
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	230
PluTI	GGCGCC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	3 cut(s)	114, 317, 519
PspPI	GGNCC	1 cut(s)	518
PspPPI	RGGWCCY	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	3 cut(s)	98, 432, 457
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	260, 386
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	355, 477
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	348, 392
SetI	ASST	9 cut(s)	11, 23, 72, 131, 200, 329, 378, 452, 474
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	511
SfoI	GGCGCC	1 cut(s)	317
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	3 cut(s)	98, 432, 457
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	119, 306
SsiI	CCGC	1 cut(s)	268
SspDI	GGCGCC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	346, 390
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	194, 480
TasI	AATT	2 cut(s)	119, 306
Tru1I	TTAA	2 cut(s)	260, 386
Tru9I	TTAA	2 cut(s)	260, 386
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	82, 190
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.