Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000468.1

Orthogroup ID

OG0009033

Physical Location & Seq

Genomic Coordinates Reverse (-)

59959 .. 64183

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000468.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggagccagaggctgcaacttcgacccctccccgtcccagaagccgtcctcagctttcatgggtcaatctctccagaaatctattacttgcatatcagagccttggtgtggtttatggggacctcagtacttctcctctctatgtttatactagcacatttctagggaagttgccgaaccatcacaatgaggaagcgatatttggtgcattttccttaattttttggacccttacactgatgcccttgctgaagtatgtctttatcctattgagtgcagacgataatggtgaaggtgggacatttgctctttactcattgctttgccgccatgcaaagtttagtttacttcccaaccaacaagcagctgatgaggaactctcagcctacaaatatggtccctcgtcacaggttgcagcttcttcccctttgaagagatttttggaaaagcataaaagccttggtatagtgcgcgtgcctgggataggcctcatatactcagagttggcaacaggagtcccggcaatattttctcactttgtaacaaatcttcctgccttccacaaggtgttggtttttgtttgcgtaaaatcagttccagttccaagtgtttcacctgaagagcgattcctcattggccggatttgtccaagaccttatcgtatgtataggtgcatcgtgaggtatgggtacaaggacattcaacgggatgatggagactttgagaaccacctcatacaaagcatagcagagttcatccagatggaagccgtggaaccacaattctcaagctctgagaactcgtcattggatggaaggatggctgttataagcaccagaacagtgcaatcaagttcgagcttcatagttactgagcaagaggattttggtgtgagtgactccatccaaagcagcaaatctttaaccctccgcagtcttgggtcagtttatgatgatgagaaccctcaaattaggaggcgccaagtcaggtttcagttaccctcaaaccccggtatggatcatgcagtaagggaagagcttatggatttaatccaggccaaggaagcaggggttgcttatataatggggcattcctatgtgaaggcgaggaggtcatcttcgtgtttgaagaagcttgtgatcgatatggggtattcttttcttaggaagaactgcaggggtccttctgtggcactcaacattcctcacatcagtcttattgaagttggcatgatatactatgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

8.4

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02050
fragaria_vesca	FvH4_6g54410 FvH4_6g54410
malus_domestica	MD09G1001500.v1.1 MD17G1005100.v1.1
prunus_persica	Prupe.3G314700_v2.0.a1 Prupe.3G314700_v2.0.a1
pyrus_communis	pycom17g00130
rosa_chinensis	RchiOBHm_Chr2g0176661
rosa_laevigata	RLG00000022433
rosa_multiflora	Rmu_co8314729.1_g000001 Rmu_co8416913.1_g000001 Rmu_sc0001417.1_g000018 Rmu_sc0012494.1_g000001 Rmu_ssc0000468.1_g000012
rosa_rugosa	Rorug02G0597400
rosa_samantha	Rh2AG674700 Rh2BG685800 Rh2CG649100 Rh2DG700000
rosa_wichuraiana	Rw0G015660 Rw2G055370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	978
AccII	CGCG	1 cut(s)	474
AciI	CCGC	2 cut(s)	328, 931
AclWI	GGATC	1 cut(s)	1026
AcoI	YGGCCR	1 cut(s)	637
AcuI	CTGAAG	2 cut(s)	272, 639
AcyI	GRCGYC	1 cut(s)	979
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	2 cut(s)	130, 692
AfiI	CCNNNNNNNGG	4 cut(s)	109, 485, 1015, 1060
AgsI	TTSAA	4 cut(s)	433, 704, 1129, 1223
AjnI	CCWGG	2 cut(s)	478, 1053
AjuI	GAANNNNNNNTTGG	8 cut(s)	186, 218, 425, 457, 791, 823, 975, 1007
AluBI	AGCT	7 cut(s)	55, 368, 419, 792, 861, 1039, 1135
AluI	AGCT	7 cut(s)	55, 368, 419, 792, 861, 1039, 1135
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	3 cut(s)	487, 637, 1056
ApeKI	GCWGC	4 cut(s)	14, 365, 416, 912
AspLEI	GCGC	2 cut(s)	474, 981
AspS9I	GGNCC	4 cut(s)	121, 228, 398, 1181
AsuC2I	CCSGG	2 cut(s)	521, 1011
AsuHPI	GGTGA	2 cut(s)	302, 606
AvaII	GGWCC	4 cut(s)	121, 228, 398, 1181
BanI	GGYRCC	1 cut(s)	978
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	377, 428, 924
BccI	CCATC	6 cut(s)	189, 707, 757, 806, 814, 911
BceAI	ACGGC	2 cut(s)	30, 755
BciT130I	CCWGG	2 cut(s)	480, 1055
BcnI	CCSGG	2 cut(s)	521, 1011
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	153, 164
BfmI	CTRYAG	1 cut(s)	1174
BfoI	RGCGCY	1 cut(s)	982
BisI	GCNGC	5 cut(s)	15, 328, 366, 417, 913
BlsI	GCNGC	5 cut(s)	16, 329, 367, 418, 914
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	4 cut(s)	480, 521, 1011, 1055
Bme18I	GGWCC	4 cut(s)	121, 228, 398, 1181
BmgT120I	GGNCC	4 cut(s)	121, 228, 398, 1181
BmiI	GGNNCC	7 cut(s)	6, 122, 230, 400, 777, 980, 1182
BmrFI	CCNGG	4 cut(s)	480, 521, 1011, 1055
BmsI	GCATC	2 cut(s)	231, 684
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	772
BpuMI	CCSGG	2 cut(s)	521, 1011
Bsa29I	ATCGAT	1 cut(s)	1143
BsaHI	GRCGYC	1 cut(s)	979
BsaJI	CCNNGG	6 cut(s)	103, 460, 479, 771, 1009, 1059
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 485, 1015, 1060
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	480, 1055
BseCI	ATCGAT	1 cut(s)	1143
BseDI	CCNNGG	6 cut(s)	103, 460, 479, 771, 1009, 1059
BseGI	GGATG	5 cut(s)	715, 756, 817, 825, 903
BseLI	CCNNNNNNNGG	4 cut(s)	109, 485, 1015, 1060
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	6 cut(s)	65, 139, 396, 513, 786, 864
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	2 cut(s)	126, 1123
BseXI	GCAGC	3 cut(s)	377, 428, 924
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	489, 639, 1058
BshNI	GGYRCC	1 cut(s)	978
BshVI	ATCGAT	1 cut(s)	1143
BsiSI	CCGG	3 cut(s)	521, 640, 1011
BslFI	GGGAC	5 cut(s)	21, 134, 313, 384, 503
BslI	CCNNNNNNNGG	4 cut(s)	109, 485, 1015, 1060
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	5 cut(s)	21, 134, 313, 384, 503
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	3 cut(s)	489, 639, 1058
Bsp143I	GATC	2 cut(s)	1018, 1140
BspACI	CCGC	2 cut(s)	328, 931
BspANI	GGCC	3 cut(s)	489, 639, 1058
BspCNI	CTCAG	6 cut(s)	64, 138, 395, 512, 787, 865
BspDI	ATCGAT	1 cut(s)	1143
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	7 cut(s)	6, 122, 230, 400, 777, 980, 1182
BspMAI	CTGCAG	1 cut(s)	1178
BspPI	GGATC	1 cut(s)	1026
BspQI	GCTCTTC	2 cut(s)	615, 1029
BspT107I	GGYRCC	1 cut(s)	978
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	6 cut(s)	103, 460, 479, 771, 1009, 1059
BssMI	GATC	2 cut(s)	1018, 1140
BssNI	GRCGYC	1 cut(s)	979
BssT1I	CCWWGG	3 cut(s)	103, 460, 1059
Bst2UI	CCWGG	2 cut(s)	480, 1055
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	3 cut(s)	428, 615, 1029
BstACI	GRCGYC	1 cut(s)	979
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	7 cut(s)	51, 125, 382, 499, 795, 873, 1163
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	5 cut(s)	715, 756, 817, 825, 903
BstFNI	CGCG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	982
BstHHI	GCGC	2 cut(s)	474, 981
BstKTI	GATC	2 cut(s)	1021, 1143
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	2 cut(s)	1018, 1140
BstMWI	GCNNNNNNNGC	2 cut(s)	1064, 1073
BstNI	CCWGG	2 cut(s)	480, 1055
BstSCI	CCNGG	4 cut(s)	478, 519, 1009, 1053
BstSFI	CTRYAG	1 cut(s)	1174
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	377, 428, 924
Bsu15I	ATCGAT	1 cut(s)	1143
BsuRI	GGCC	3 cut(s)	489, 639, 1058
BsuTUI	ATCGAT	1 cut(s)	1143
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	5 cut(s)	715, 756, 817, 825, 903
BtsIMutI	CAGTG	2 cut(s)	236, 849
Cac8I	GCNNGC	1 cut(s)	476
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	2 cut(s)	474, 981
Cfr13I	GGNCC	4 cut(s)	121, 228, 398, 1181
ClaI	ATCGAT	1 cut(s)	1143
Csp6I	GTAC	2 cut(s)	129, 691
CviAII	CATG	4 cut(s)	60, 332, 1022, 1231
CviQI	GTAC	2 cut(s)	129, 691
DdeI	CTNAG	7 cut(s)	51, 125, 382, 499, 795, 873, 1163
DinI	GGCGCC	1 cut(s)	980
DpnI	GATC	2 cut(s)	1020, 1142
DpnII	GATC	2 cut(s)	1018, 1140
DraIII	CACNNNGTG	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	3 cut(s)	428, 615, 1029
EarI	CTCTTC	3 cut(s)	428, 615, 1029
Eco130I	CCWWGG	3 cut(s)	103, 460, 1059
Eco147I	AGGCCT	1 cut(s)	489
Eco47I	GGWCC	4 cut(s)	121, 228, 398, 1181
Eco57I	CTGAAG	2 cut(s)	272, 639
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	2 cut(s)	121, 1181
EcoRII	CCWGG	2 cut(s)	478, 1053
EcoT14I	CCWWGG	3 cut(s)	103, 460, 1059
EgeI	GGCGCC	1 cut(s)	980
EheI	GGCGCC	1 cut(s)	980
ErhI	CCWWGG	3 cut(s)	103, 460, 1059
FaeI	CATG	4 cut(s)	63, 335, 1025, 1234
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	5 cut(s)	21, 134, 313, 384, 503
FatI	CATG	4 cut(s)	59, 331, 1021, 1230
Fnu4HI	GCNGC	5 cut(s)	15, 328, 366, 417, 913
FokI	GGATG	5 cut(s)	722, 743, 824, 832, 890
Fsp4HI	GCNGC	5 cut(s)	15, 328, 366, 417, 913
FspBI	CTAG	2 cut(s)	153, 164
GlaI	GCGC	2 cut(s)	473, 980
GluI	GCNGC	5 cut(s)	15, 328, 366, 417, 913
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	982
HaeIII	GGCC	3 cut(s)	489, 639, 1058
HapII	CCGG	3 cut(s)	521, 640, 1011
HhaI	GCGC	2 cut(s)	474, 981
Hin1I	GRCGYC	1 cut(s)	979
Hin1II	CATG	4 cut(s)	63, 335, 1025, 1234
Hin6I	GCGC	2 cut(s)	472, 979
HinP1I	GCGC	2 cut(s)	472, 979
HindIII	AAGCTT	1 cut(s)	1133
HinfI	GANTC	3 cut(s)	516, 627, 899
HpaII	CCGG	3 cut(s)	521, 640, 1011
HphI	GGTGA	2 cut(s)	302, 606
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	99, 502, 796
Hpy188III	TCNNGA	3 cut(s)	75, 679, 760
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	287, 568, 810, 1096, 1194
HpyCH4III	ACNGT	1 cut(s)	844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1064, 1073
HpyF3I	CTNAG	7 cut(s)	51, 125, 382, 499, 795, 873, 1163
Hsp92I	GRCGYC	1 cut(s)	979
Hsp92II	CATG	4 cut(s)	63, 335, 1025, 1234
HspAI	GCGC	2 cut(s)	472, 979
KasI	GGCGCC	1 cut(s)	978
Kzo9I	GATC	2 cut(s)	1018, 1140
LguI	GCTCTTC	2 cut(s)	615, 1029
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	377, 428, 924
LweI	GCATC	2 cut(s)	231, 684
MaeI	CTAG	2 cut(s)	153, 164
MaeIII	GTNAC	5 cut(s)	405, 541, 868, 896, 996
MalI	GATC	2 cut(s)	1020, 1142
MboI	GATC	2 cut(s)	1018, 1140
MboII	GAAGA	8 cut(s)	414, 445, 542, 632, 1046, 1110, 1141, 1180
MluCI	AATT	3 cut(s)	219, 782, 969
Mly113I	GGCGCC	1 cut(s)	979
MlyI	GAGTC	2 cut(s)	525, 893
MseI	TTAA	3 cut(s)	218, 923, 1049
MslI	CAYNNNNRTG	4 cut(s)	186, 761, 1095, 1120
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	521, 640, 1011
MspR9I	CCNGG	4 cut(s)	480, 521, 1011, 1055
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	2 cut(s)	480, 1055
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	1064, 1073
NarI	GGCGCC	1 cut(s)	979
NciI	CCSGG	2 cut(s)	521, 1011
NdeII	GATC	2 cut(s)	1018, 1140
NlaIII	CATG	4 cut(s)	63, 335, 1025, 1234
NlaIV	GGNNCC	7 cut(s)	6, 122, 230, 400, 777, 980, 1182
NmuCI	GTSAC	2 cut(s)	405, 896
PceI	AGGCCT	1 cut(s)	489
PciSI	GCTCTTC	2 cut(s)	615, 1029
PctI	GAATGC	1 cut(s)	1090
PfeI	GAWTC	1 cut(s)	627
PkrI	GCNGC	5 cut(s)	16, 329, 367, 418, 914
PleI	GAGTC	2 cut(s)	524, 893
PluTI	GGCGCC	1 cut(s)	982
PpsI	GAGTC	2 cut(s)	524, 893
PpuMI	RGGWCCY	2 cut(s)	121, 1181
PsiI	TTATAA	1 cut(s)	830
Psp5II	RGGWCCY	2 cut(s)	121, 1181
Psp6I	CCWGG	2 cut(s)	478, 1053
PspGI	CCWGG	2 cut(s)	478, 1053
PspN4I	GGNNCC	7 cut(s)	6, 122, 230, 400, 777, 980, 1182
PspPI	GGNCC	4 cut(s)	121, 228, 398, 1181
PspPPI	RGGWCCY	2 cut(s)	121, 1181
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
PstI	CTGCAG	1 cut(s)	1178
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	130, 692
RsaNI	GTAC	2 cut(s)	129, 691
RseI	CAYNNNNRTG	4 cut(s)	186, 761, 1095, 1120
SapI	GCTCTTC	2 cut(s)	615, 1029
SaqAI	TTAA	3 cut(s)	218, 923, 1049
SatI	GCNGC	5 cut(s)	15, 328, 366, 417, 913
Sau3AI	GATC	2 cut(s)	1018, 1140
Sau96I	GGNCC	4 cut(s)	121, 228, 398, 1181
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	2 cut(s)	525, 893
ScrFI	CCNGG	4 cut(s)	480, 521, 1011, 1055
SfaNI	GCATC	2 cut(s)	231, 684
SfcI	CTRYAG	1 cut(s)	1174
SfoI	GGCGCC	1 cut(s)	980
SinI	GGWCC	4 cut(s)	121, 228, 398, 1181
SmiMI	CAYNNNNRTG	4 cut(s)	186, 761, 1095, 1120
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	3 cut(s)	219, 782, 969
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	328, 931
SspDI	GGCGCC	1 cut(s)	978
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	2 cut(s)	153, 164
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	4 cut(s)	478, 519, 1009, 1053
StyI	CCWWGG	3 cut(s)	103, 460, 1059
TaaI	ACNGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	23, 857, 1143
TasI	AATT	3 cut(s)	219, 782, 969
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	3 cut(s)	218, 923, 1049
Tru9I	TTAA	3 cut(s)	218, 923, 1049
TscAI	CASTG	2 cut(s)	243, 849
TseFI	GTSAC	2 cut(s)	405, 896
TseI	GCWGC	4 cut(s)	14, 365, 416, 912
Tsp45I	GTSAC	2 cut(s)	405, 896
TspDTI	ATGAA	3 cut(s)	48, 745, 853
TspRI	CASTG	2 cut(s)	243, 849
VpaK11BI	GGWCC	4 cut(s)	121, 228, 398, 1181
XagI	CCTNNNNNAGG	1 cut(s)	483
XspI	CTAG	2 cut(s)	153, 164
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.