Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012494.1

Orthogroup ID

OG0009033

Physical Location & Seq

Genomic Coordinates Forward (+)

1840 .. 2981

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012494.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggagccagaggctgcaacttcgacccctccccgtcccagaagccgtcctcagctttcatgggtcaatctctccagaaatctattacttgcatatcagagccttggtgtggtttatggggacctcagtacttctcctctctatgtttatactagcacatttctagggaagttgccgaaccatcacaatgaggaagcgatatttggtgcattttccttaattttttggacccttacactgatgcccttgctgaagtatgtctttatcctattgagtgcagacgataatggtgaaggtgcggttacacttgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

5.14

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02050
fragaria_vesca	FvH4_6g54410 FvH4_6g54410
malus_domestica	MD09G1001500.v1.1 MD17G1005100.v1.1
prunus_persica	Prupe.3G314700_v2.0.a1 Prupe.3G314700_v2.0.a1
pyrus_communis	pycom17g00130
rosa_chinensis	RchiOBHm_Chr2g0176661
rosa_laevigata	RLG00000022433
rosa_multiflora	Rmu_co8314729.1_g000001 Rmu_co8416913.1_g000001 Rmu_sc0001417.1_g000018 Rmu_sc0012494.1_g000001 Rmu_ssc0000468.1_g000012
rosa_rugosa	Rorug02G0597400
rosa_samantha	Rh2AG674700 Rh2BG685800 Rh2CG649100 Rh2DG700000
rosa_wichuraiana	Rw0G015660 Rw2G055370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	121, 228
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	121, 228
BbvCI	CCTCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	153, 164
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	121, 228
BmgT120I	GGNCC	2 cut(s)	121, 228
BmiI	GGNNCC	3 cut(s)	6, 122, 230
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	65, 139
BseRI	GAGGAG	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	21, 134
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	21, 134
BspACI	CCGC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	64, 138
BspLI	GGNNCC	3 cut(s)	6, 122, 230
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	51, 125
BtsIMutI	CAGTG	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	121, 228
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	5 cut(s)	7, 14, 45, 55, 102
CviKI_1	RGCY	5 cut(s)	7, 14, 45, 55, 102
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	51, 125
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	121, 228
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	63
FaiI	YATR	6 cut(s)	61, 94, 117, 144, 150, 258
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	2 cut(s)	21, 134
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	153, 164
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	58
Hin1II	CATG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	17, 92, 209, 278
HpyF3I	CTNAG	2 cut(s)	51, 125
Hsp92II	CATG	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	21, 52, 88
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	153, 164
MaeIII	GTNAC	1 cut(s)	301
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	6 cut(s)	4, 39, 60, 134, 147, 184
MseI	TTAA	2 cut(s)	218, 316
MslI	CAYNNNNRTG	1 cut(s)	186
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	3 cut(s)	6, 122, 230
PkrI	GCNGC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	6, 122, 230
PspPI	GGNCC	2 cut(s)	121, 228
PspPPI	RGGWCCY	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	218, 316
SatI	GCNGC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	121, 228
ScaI	AGTACT	1 cut(s)	130
SetI	ASST	3 cut(s)	57, 126, 298
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	2 cut(s)	121, 228
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	153, 164
StyI	CCWWGG	1 cut(s)	103
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	219
TatI	WGTACW	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	218, 316
Tru9I	TTAA	2 cut(s)	218, 316
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	121, 228
XspI	CTAG	2 cut(s)	153, 164
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.