Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335393.1

Orthogroup ID

OG0007930

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 974

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 973 bp

ctgagtaacgtgacggttaagtaccagcttccgaacgaggaactggatgctctgatctccgtcacgacggacgaggacgtcgacaacatgatggacgagtacgaccgcatcacacagaatcaaaacccgaaagcggctcggctccgcctctttctcttccccaaaggcgacgaggactcggcttcccgaacctccagcatcagctcgctcctcgacggctcggctaagcgcgagcactggttcctcgacgcgctcaacagcggggcgtcgaacgcttcgctcctcgagcgcggccgttctgaagcctcctcgattctctccgaagtgccggactatctgttcgggttggacaactccgacgacactcacaaccgggagttcagagcgaagacccgacccggggttttacaggacaacgtatcggcttcggatcccggttctcccgctccggttatctcgtcgccgttttgctccacgtcgtcaaatccctccgtgccgtcgctgccgaatctccccccggtgaagaccaagccggattcgaagccggagacgagagagaatcagtcggagggttttgcagagacgacggcggagttgcccgtttcgcaagcaacagggttttcggggaatcccgggttgcattatatccaggacccgaattatccgggtcatgttgtgcgctcagtaccggtttattattacccggctccggttcaaccggcaaacgtaccggtccagcaggttcaaatacggactccgtatatgcctcagcaataccaggctctgccgggtcagataccggtcgggtatcataatcagatgccgggtatgggccaggtttatggtggaggtttaaggcccgttgcgggaatggaccagtatgacgtgtcgggtagggttgtttctgatggagtgaaccagcaggtgtactatggggtgaggaatggtggtgtggttccgggatataatccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

324

Amino Acids

35.19

Weight (kDa)

4.84

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05150
fragaria_vesca	FvH4_3g03730 FvH4_3g03730 FvH4_3g03730
malus_domestica	MD05G1327000.v1.1 MD10G1305100.v1.1
prunus_persica	Prupe.4G034500_v2.0.a1 Prupe.4G034500_v2.0.a1 Prupe.4G034500_v2.0.a1 Prupe.4G034500_v2.0.a1
pyrus_communis	pycom05g30130 pycom10g25760
rosa_laevigata	RLG00000031326
rosa_multiflora	Rmu_co8335393.1_g000001 Rmu_sc0017047.1_g000002 Rmu_sc0040229.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070080
rosa_rugosa	Rorug04G0418100 Rorug04G0418100
rosa_samantha	Rh5AG045600 Rh5BG044300 Rh5CG053100 Rh5DG044100
rosa_wichuraiana	Rw5G004590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	913
AasI	GACNNNNNNGTC	1 cut(s)	77
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	2 cut(s)	730, 913
AccBSI	CCGCTC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	231, 251, 291
AciI	CCGC	8 cut(s)	106, 134, 145, 261, 291, 444, 590, 866
AclWI	GGATC	2 cut(s)	425, 438
AcoI	YGGCCR	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	321
AcyI	GRCGYC	2 cut(s)	78, 266
AfaI	GTAC	5 cut(s)	23, 101, 687, 729, 929
AfiI	CCNNNNNNNGG	6 cut(s)	133, 399, 400, 709, 830, 866
AflIII	ACRYGT	1 cut(s)	885
AgeI	ACCGGT	3 cut(s)	688, 730, 799
AgsI	TTSAA	2 cut(s)	716, 746
AjiI	CACGTC	2 cut(s)	477, 886
AjnI	CCWGG	3 cut(s)	648, 777, 834
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	2 cut(s)	28, 204
AluI	AGCT	2 cut(s)	28, 204
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	2 cut(s)	542, 575
AlwI	GGATC	2 cut(s)	425, 438
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	3 cut(s)	284, 398, 632
AoxI	GGCC	3 cut(s)	292, 832, 857
ApeKI	GCWGC	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsiGI	ACCGGT	3 cut(s)	688, 730, 799
AspLEI	GCGC	4 cut(s)	231, 253, 291, 681
AspS9I	GGNCC	5 cut(s)	652, 733, 832, 858, 874
AsuHPI	GGTGA	2 cut(s)	532, 949
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	3 cut(s)	284, 398, 632
AvaII	GGWCC	3 cut(s)	652, 733, 874
BamHI	GGATCC	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	395, 530
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	85, 902
BceAI	ACGGC	5 cut(s)	232, 279, 448, 481, 603
BciT130I	CCWGG	3 cut(s)	650, 779, 836
BcoDI	GTCTC	2 cut(s)	542, 575
BfuAI	ACCTGC	2 cut(s)	730, 913
BisI	GCNGC	3 cut(s)	135, 292, 503
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	136, 293, 504
Bme18I	GGWCC	3 cut(s)	652, 733, 874
BmeT110I	CYCGRG	3 cut(s)	284, 398, 632
BmgBI	CACGTC	2 cut(s)	477, 886
BmgT120I	GGNCC	5 cut(s)	652, 733, 832, 858, 874
BmiI	GGNNCC	6 cut(s)	143, 242, 432, 654, 708, 957
BmsI	GCATC	4 cut(s)	37, 117, 207, 810
BpiI	GAAGAC	2 cut(s)	395, 530
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	78, 266
BsaJI	CCNNGG	4 cut(s)	398, 399, 516, 632
BsaWI	WCCGGW	5 cut(s)	448, 688, 709, 730, 799
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 399, 400, 709, 830, 866
Bse118I	RCCGGY	4 cut(s)	688, 718, 730, 799
Bse1I	ACTGG	3 cut(s)	48, 242, 877
BseBI	CCWGG	3 cut(s)	650, 779, 836
BseDI	CCNNGG	4 cut(s)	398, 399, 516, 632
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	6 cut(s)	133, 399, 400, 709, 830, 866
BseMII	CTCAG	2 cut(s)	696, 782
BseNI	ACTGG	3 cut(s)	48, 242, 877
BseRI	GAGGAG	3 cut(s)	200, 272, 298
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	489
Bsh1236I	CGCG	3 cut(s)	231, 251, 291
Bsh1285I	CGRYCG	3 cut(s)	106, 295, 804
BshFI	GGCC	3 cut(s)	294, 834, 859
BshTI	ACCGGT	3 cut(s)	688, 730, 799
BsiEI	CGRYCG	3 cut(s)	106, 295, 804
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	3 cut(s)	284, 398, 632
BslI	CCNNNNNNNGG	6 cut(s)	133, 399, 400, 709, 830, 866
BsmAI	GTCTC	2 cut(s)	542, 575
BsmBI	CGTCTC	2 cut(s)	542, 575
BsnI	GGCC	3 cut(s)	294, 834, 859
BsoBI	CYCGRG	3 cut(s)	284, 398, 632
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	54, 430
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	8 cut(s)	106, 134, 145, 261, 291, 444, 590, 866
BspANI	GGCC	3 cut(s)	294, 834, 859
BspCNI	CTCAG	2 cut(s)	695, 781
BspFNI	CGCG	3 cut(s)	231, 251, 291
BspLI	GGNNCC	6 cut(s)	143, 242, 432, 654, 708, 957
BspMI	ACCTGC	2 cut(s)	730, 913
BspPI	GGATC	2 cut(s)	425, 438
BspT104I	TTCGAA	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	446
BsrFI	RCCGGY	4 cut(s)	688, 718, 730, 799
BsrI	ACTGG	3 cut(s)	48, 242, 877
BssAI	RCCGGY	4 cut(s)	688, 718, 730, 799
BssECI	CCNNGG	4 cut(s)	398, 399, 516, 632
BssMI	GATC	2 cut(s)	54, 430
BssNI	GRCGYC	2 cut(s)	78, 266
Bst2UI	CCWGG	3 cut(s)	650, 779, 836
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	2 cut(s)	78, 266
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	206, 233, 609
BstDEI	CTNAG	4 cut(s)	2, 225, 682, 768
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	3 cut(s)	231, 251, 291
BstHHI	GCGC	4 cut(s)	231, 253, 291, 681
BstKTI	GATC	2 cut(s)	57, 433
BstMAI	GTCTC	2 cut(s)	542, 575
BstMBI	GATC	2 cut(s)	54, 430
BstMCI	CGRYCG	3 cut(s)	106, 295, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 286, 502, 604
BstNI	CCWGG	3 cut(s)	650, 779, 836
BstUI	CGCG	3 cut(s)	231, 251, 291
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	2 cut(s)	395, 530
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	294, 834, 859
BtrI	CACGTC	2 cut(s)	477, 886
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	235
BveI	ACCTGC	2 cut(s)	730, 913
Cac8I	GCNNGC	3 cut(s)	206, 233, 609
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	4 cut(s)	231, 253, 291, 681
Cfr10I	RCCGGY	4 cut(s)	688, 718, 730, 799
Cfr13I	GGNCC	5 cut(s)	652, 733, 832, 858, 874
Cfr9I	CCCGGG	2 cut(s)	398, 632
CseI	GACGC	2 cut(s)	255, 257
Csp6I	GTAC	5 cut(s)	22, 100, 686, 728, 928
CspAI	ACCGGT	3 cut(s)	688, 730, 799
CviAII	CATG	2 cut(s)	88, 671
CviQI	GTAC	5 cut(s)	22, 100, 686, 728, 928
DdeI	CTNAG	4 cut(s)	2, 225, 682, 768
DpnI	GATC	2 cut(s)	56, 432
DpnII	GATC	2 cut(s)	54, 430
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	2 cut(s)	134, 605
EclXI	CGGCCG	1 cut(s)	292
Eco47I	GGWCC	3 cut(s)	652, 733, 874
Eco52I	CGGCCG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	3 cut(s)	284, 398, 632
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	3 cut(s)	648, 777, 834
Esp3I	CGTCTC	2 cut(s)	542, 575
FaeI	CATG	2 cut(s)	91, 674
FatI	CATG	2 cut(s)	87, 670
FauI	CCCGC	3 cut(s)	254, 451, 859
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	135, 292, 503
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	135, 292, 503
GlaI	GCGC	4 cut(s)	230, 252, 290, 680
GluI	GCNGC	3 cut(s)	135, 292, 503
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	294, 834, 859
HgaI	GACGC	2 cut(s)	255, 257
HhaI	GCGC	4 cut(s)	231, 253, 291, 681
Hin1I	GRCGYC	2 cut(s)	78, 266
Hin1II	CATG	2 cut(s)	91, 674
Hin6I	GCGC	4 cut(s)	229, 251, 289, 679
HinP1I	GCGC	4 cut(s)	229, 251, 289, 679
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	8 cut(s)	118, 176, 313, 508, 536, 559, 628, 754
HphI	GGTGA	2 cut(s)	532, 949
Hpy166II	GTNNAC	3 cut(s)	82, 916, 928
Hpy188III	TCNNGA	2 cut(s)	64, 186
Hpy8I	GTNNAC	3 cut(s)	82, 916, 928
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	6 cut(s)	9, 78, 417, 476, 726, 885
HpyCH4V	TGCA	2 cut(s)	578, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 286, 502, 604
HpyF3I	CTNAG	4 cut(s)	2, 225, 682, 768
HpySE526I	ACGT	6 cut(s)	9, 78, 417, 476, 726, 885
Hsp92I	GRCGYC	2 cut(s)	78, 266
Hsp92II	CATG	2 cut(s)	91, 674
HspAI	GCGC	4 cut(s)	229, 251, 289, 679
Kzo9I	GATC	2 cut(s)	54, 430
LmnI	GCTCC	6 cut(s)	147, 213, 285, 451, 476, 712
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	4 cut(s)	37, 117, 207, 810
MaeII	ACGT	6 cut(s)	9, 78, 417, 476, 726, 885
MaeIII	GTNAC	3 cut(s)	5, 10, 61
MalI	GATC	2 cut(s)	56, 432
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	2 cut(s)	54, 430
MboII	GAAGA	3 cut(s)	148, 400, 535
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	170, 748
MmeI	TCCRAC	3 cut(s)	327, 381, 546
MseI	TTAA	2 cut(s)	18, 854
MspA1I	CMGCKG	1 cut(s)	261
MvaI	CCWGG	3 cut(s)	650, 779, 836
MvnI	CGCG	3 cut(s)	231, 251, 291
MwoI	GCNNNNNNNGC	4 cut(s)	272, 286, 502, 604
NdeII	GATC	2 cut(s)	54, 430
NlaIII	CATG	2 cut(s)	91, 674
NlaIV	GGNNCC	6 cut(s)	143, 242, 432, 654, 708, 957
NmeAIII	GCCGAG	3 cut(s)	118, 158, 200
NmuCI	GTSAC	2 cut(s)	10, 61
NspV	TTCGAA	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	6 cut(s)	118, 313, 508, 536, 559, 628
PfoI	TCCNGGA	2 cut(s)	648, 958
PinAI	ACCGGT	3 cut(s)	688, 730, 799
PkrI	GCNGC	3 cut(s)	136, 293, 504
PleI	GAGTC	2 cut(s)	170, 748
PpsI	GAGTC	2 cut(s)	170, 748
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	3 cut(s)	648, 777, 834
PspGI	CCWGG	3 cut(s)	648, 777, 834
PspN4I	GGNNCC	6 cut(s)	143, 242, 432, 654, 708, 957
PspPI	GGNCC	5 cut(s)	652, 733, 832, 858, 874
PspPPI	RGGWCCY	1 cut(s)	652
PspXI	VCTCGAGB	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	5 cut(s)	23, 101, 687, 729, 929
RsaNI	GTAC	5 cut(s)	22, 100, 686, 728, 928
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	18, 854
SatI	GCNGC	3 cut(s)	135, 292, 503
Sau3AI	GATC	2 cut(s)	54, 430
Sau96I	GGNCC	5 cut(s)	652, 733, 832, 858, 874
SchI	GAGTC	2 cut(s)	170, 748
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	4 cut(s)	37, 117, 207, 810
Sfr274I	CTCGAG	1 cut(s)	284
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	3 cut(s)	652, 733, 874
SlaI	CTCGAG	1 cut(s)	284
SmaI	CCCGGG	2 cut(s)	400, 634
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	658
SsiI	CCGC	8 cut(s)	106, 134, 145, 261, 291, 444, 590, 866
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	6 cut(s)	12, 81, 420, 479, 729, 888
TaqI	TCGA	7 cut(s)	81, 213, 246, 269, 285, 311, 539
TasI	AATT	1 cut(s)	658
TatI	WGTACW	1 cut(s)	927
TauI	GCSGC	2 cut(s)	137, 294
TfiI	GAWTC	6 cut(s)	118, 313, 508, 536, 559, 628
Tru1I	TTAA	2 cut(s)	18, 854
Tru9I	TTAA	2 cut(s)	18, 854
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	2 cut(s)	10, 61
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	2 cut(s)	10, 61
TspGWI	ACGGA	5 cut(s)	49, 83, 481, 747, 766
TspMI	CCCGGG	2 cut(s)	398, 632
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	652, 733, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	284
XmaI	CCCGGG	2 cut(s)	398, 632
XmiI	GTMKAC	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.