Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345735.1

Orthogroup ID

OG0007694

Physical Location & Seq

Genomic Coordinates Reverse (-)

73 .. 924

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345735.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ctgaaaacgaagcagcaggagctcctgatccgagtctccatcctctgcttagtctatgtcttggcattcatcactcgccttttcagcgtgcttcgctatgagtccatgatccacgagttcgatccctatttcaattaccgcacaaccctctacttgaccgagaaaggcttctacgaattctggaactggttcgattctgagagctggtaccctttgggccggatcatcggtggcactctctacccgggcctcatggtcaccgccgccctcatctactgggctctccgcttcctccgtttcgcagtccacattcgtgaagtctgcgttttaaccgcgccatttttcgcctccaacaccaccatcgttgcttatttgttcggaaaggagatttgggacaccggcgctggccttgttgcagctgcattgatcgccatttgccccggttacatctccagatcggtggccggctcctatgacaatgagggtgtggccattttcgccctgttgttgacattttacctgtttgtcaaggctgtaaacacagggtcactcgcttggtccttggcctcggccttcggctacttctacatggtttcggcttggggaggttatgtgttcattatcaacttggttcctctttacgttttggtgctcttgattaccggacgctactccatgaggttgtatgtggcttataattgcatgtatattgtggggatgttgctagctatgcaaattcggtttgttgggtttcagcacgtgcagtctggggagcatatggctgccatgggagttttcttcttaatgcaggtttgcttctctatgcatacgtttgtttctctccaactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

283

Amino Acids

32.3

Weight (kDa)

8.53

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19180 AT3G19180
fragaria_vesca	FvH4_5g18390 FvH4_5g18390 FvH4_5g18390
malus_domestica	MD06G1239700.v1.1 MD14G1245800.v1.1
prunus_persica	Prupe.5G243600_v2.0.a1
pyrus_communis	pycom06g21520 pycom14g20670
rosa_chinensis	RchiOBHm_Chr7g0177091
rosa_laevigata	RLG00000005557
rosa_multiflora	Rmu_co8345735.1_g000001 Rmu_sc0005310.1_g000023 Rmu_sc0005912.1_g000002
rosa_roxburghii	Rroxscaffold_3G00276100
rosa_rugosa	Rorug06G0403700
rosa_samantha	Rh7AG003100 Rh7BG003500 Rh7BG003600 Rh7CG002700 Rh7CG002800 Rh7DG003200
rosa_wichuraiana	Rw7G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	799
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	1 cut(s)	335
AciI	CCGC	5 cut(s)	139, 261, 264, 286, 333
AclWI	GGATC	4 cut(s)	22, 103, 116, 230
AcoI	YGGCCR	2 cut(s)	462, 489
AcsI	RAATTY	2 cut(s)	176, 735
AcvI	CACGTG	1 cut(s)	760
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	22, 204, 419, 728
AluI	AGCT	4 cut(s)	22, 204, 419, 728
Alw21I	GWGCWC	2 cut(s)	24, 654
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	4 cut(s)	22, 103, 116, 230
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	7 cut(s)	217, 247, 406, 462, 489, 564, 570
ApeKI	GCWGC	4 cut(s)	13, 416, 419, 782
ApoI	RAATTY	2 cut(s)	176, 735
Asp700I	GAANNNNTTC	2 cut(s)	167, 188
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	337, 404
AspS9I	GGNCC	3 cut(s)	217, 247, 558
AsuC2I	CCSGG	3 cut(s)	245, 246, 441
AsuHPI	GGTGA	1 cut(s)	250
AsuNHI	GCTAGC	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	24, 283
BauI	CACGAG	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	760
Bbv12I	GWGCWC	2 cut(s)	24, 654
BbvI	GCAGC	4 cut(s)	25, 406, 428, 769
BccI	CCATC	2 cut(s)	47, 368
BcnI	CCSGG	3 cut(s)	245, 246, 441
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	725
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	14, 264, 417, 420, 783
BlsI	GCNGC	5 cut(s)	15, 265, 418, 421, 784
Bme1390I	CCNGG	3 cut(s)	245, 246, 441
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	217, 247, 558
BmiI	GGNNCC	3 cut(s)	209, 469, 633
BmrFI	CCNGG	3 cut(s)	245, 246, 441
BmrI	ACTGGG	1 cut(s)	286
BmtI	GCTAGC	1 cut(s)	728
BmuI	ACTGGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	436
BpuMI	CCSGG	3 cut(s)	245, 246, 441
BsaAI	YACGTR	1 cut(s)	760
BsaJI	CCNNGG	5 cut(s)	244, 439, 561, 567, 786
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bse118I	RCCGGY	2 cut(s)	398, 464
Bse1I	ACTGG	2 cut(s)	191, 281
BseDI	CCNNGG	5 cut(s)	244, 439, 561, 567, 786
BseGI	GGATG	2 cut(s)	39, 723
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	191, 281
BseXI	GCAGC	4 cut(s)	25, 406, 428, 769
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	7 cut(s)	219, 249, 408, 464, 491, 566, 572
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	24, 654
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	6 cut(s)	220, 245, 399, 441, 465, 663
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	7 cut(s)	219, 249, 408, 464, 491, 566, 572
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	3 cut(s)	24, 283, 654
Bsp143I	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
Bsp19I	CCATGG	1 cut(s)	786
BspACI	CCGC	5 cut(s)	139, 261, 264, 286, 333
BspANI	GGCC	7 cut(s)	219, 249, 408, 464, 491, 566, 572
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	209, 469, 633
BspMI	ACCTGC	1 cut(s)	799
BspOI	GCTAGC	1 cut(s)	728
BspPI	GGATC	4 cut(s)	22, 103, 116, 230
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	398, 464
BsrI	ACTGG	2 cut(s)	191, 281
BssAI	RCCGGY	2 cut(s)	398, 464
BssECI	CCNNGG	5 cut(s)	244, 439, 561, 567, 786
BssMI	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	2 cut(s)	561, 786
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	849
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	4 cut(s)	89, 406, 466, 726
BstDEI	CTNAG	2 cut(s)	49, 198
BstDSI	CCRYGG	1 cut(s)	786
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	39, 723
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	337, 404
BstKTI	GATC	6 cut(s)	30, 111, 124, 225, 429, 458
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 84, 93, 428, 497, 730
BstNSI	RCATGY	1 cut(s)	706
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	3 cut(s)	243, 244, 439
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	25, 406, 428, 769
BstXI	CCANNNNNNTGG	1 cut(s)	460
BsuRI	GGCC	7 cut(s)	219, 249, 408, 464, 491, 566, 572
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	39, 723
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	4 cut(s)	89, 406, 466, 726
CfoI	GCGC	2 cut(s)	337, 404
Cfr10I	RCCGGY	2 cut(s)	398, 464
Cfr13I	GGNCC	3 cut(s)	217, 247, 558
Cfr9I	CCCGGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	6 cut(s)	106, 253, 589, 676, 703, 787
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	49, 198
DpnI	GATC	6 cut(s)	29, 110, 123, 224, 428, 457
DpnII	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
EaeI	YGGCCR	2 cut(s)	462, 489
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	561, 786
Eco24I	GRGCYC	2 cut(s)	24, 283
Eco47I	GGWCC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	22
Eco72I	CACGTG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	244
Eco91I	GGTNACC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	561, 786
EcoT22I	ATGCAT	1 cut(s)	828
EcoT38I	GRGCYC	2 cut(s)	24, 283
ErhI	CCWWGG	2 cut(s)	561, 786
FaeI	CATG	6 cut(s)	109, 256, 592, 679, 706, 790
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	6 cut(s)	105, 252, 588, 675, 702, 786
FauNDI	CATATG	1 cut(s)	777
Fnu4HI	GCNGC	5 cut(s)	14, 264, 417, 420, 783
FokI	GGATG	2 cut(s)	26, 730
FriOI	GRGCYC	2 cut(s)	24, 283
Fsp4HI	GCNGC	5 cut(s)	14, 264, 417, 420, 783
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	2 cut(s)	336, 403
GluI	GCNGC	5 cut(s)	14, 264, 417, 420, 783
GsuI	CTGGAG	1 cut(s)	436
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	7 cut(s)	219, 249, 408, 464, 491, 566, 572
HapII	CCGG	6 cut(s)	220, 245, 399, 441, 465, 663
HgaI	GACGC	1 cut(s)	675
HhaI	GCGC	2 cut(s)	337, 404
Hin1II	CATG	6 cut(s)	109, 256, 592, 679, 706, 790
Hin6I	GCGC	2 cut(s)	335, 402
HinP1I	GCGC	2 cut(s)	335, 402
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	3 cut(s)	33, 101, 194
HpaII	CCGG	6 cut(s)	220, 245, 399, 441, 465, 663
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	307, 510, 538
Hpy188I	TCNGA	3 cut(s)	32, 199, 380
Hpy188III	TCNNGA	5 cut(s)	25, 181, 314, 453, 655
Hpy8I	GTNNAC	3 cut(s)	307, 510, 538
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4IV	ACGT	3 cut(s)	642, 759, 830
HpyCH4V	TGCA	7 cut(s)	416, 422, 702, 733, 763, 808, 826
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 84, 93, 428, 497, 730
HpyF3I	CTNAG	2 cut(s)	49, 198
HpySE526I	ACGT	3 cut(s)	642, 759, 830
Hsp92II	CATG	6 cut(s)	109, 256, 592, 679, 706, 790
HspAI	GCGC	2 cut(s)	335, 402
KpnI	GGTACC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
LmnI	GCTCC	4 cut(s)	19, 27, 473, 772
Lsp1109I	GCAGC	4 cut(s)	25, 406, 428, 769
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	3 cut(s)	642, 759, 830
MaeIII	GTNAC	3 cut(s)	256, 443, 546
MalI	GATC	6 cut(s)	29, 110, 123, 224, 428, 457
MboI	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
MboII	GAAGA	1 cut(s)	790
MhlI	GDGCHC	3 cut(s)	24, 283, 654
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	4 cut(s)	133, 176, 697, 735
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	2 cut(s)	42, 110
MmeI	TCCRAC	1 cut(s)	375
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	828
MroNI	GCCGGC	1 cut(s)	464
MroXI	GAANNNNTTC	2 cut(s)	167, 188
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	2 cut(s)	329, 803
MslI	CAYNNNNRTG	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	6 cut(s)	220, 245, 399, 441, 465, 663
MspR9I	CCNGG	3 cut(s)	245, 246, 441
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	6 cut(s)	19, 84, 93, 428, 497, 730
NaeI	GCCGGC	1 cut(s)	466
NciI	CCSGG	3 cut(s)	245, 246, 441
NcoI	CCATGG	1 cut(s)	786
NdeI	CATATG	1 cut(s)	777
NdeII	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
NgoMIV	GCCGGC	1 cut(s)	464
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	6 cut(s)	109, 256, 592, 679, 706, 790
NlaIV	GGNNCC	3 cut(s)	209, 469, 633
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	256, 546
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	1 cut(s)	706
OliI	CACNNNNGTG	1 cut(s)	312
PctI	GAATGC	1 cut(s)	65
PdiI	GCCGGC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	167, 188
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	5 cut(s)	15, 265, 418, 421, 784
PleI	GAGTC	2 cut(s)	41, 109
PmaCI	CACGTG	1 cut(s)	760
PmlI	CACGTG	1 cut(s)	760
PpsI	GAGTC	2 cut(s)	41, 109
Ppu21I	YACGTR	1 cut(s)	760
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	760
PspEI	GGTNACC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	209, 469, 633
PspPI	GGNCC	3 cut(s)	217, 247, 558
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	329, 803
SatI	GCNGC	5 cut(s)	14, 264, 417, 420, 783
Sau3AI	GATC	6 cut(s)	27, 108, 121, 222, 426, 455
Sau96I	GGNCC	3 cut(s)	217, 247, 558
SchI	GAGTC	2 cut(s)	42, 110
ScrFI	CCNGG	3 cut(s)	245, 246, 441
SduI	GDGCHC	3 cut(s)	24, 283, 654
SgrAI	CRCCGGYG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	558
SmaI	CCCGGG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	133, 176, 697, 735
SsiI	CCGC	5 cut(s)	139, 261, 264, 286, 333
SspMI	CTAG	1 cut(s)	725
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	243, 244, 439
StyI	CCWWGG	2 cut(s)	561, 786
TaaI	ACNGT	1 cut(s)	849
TaiI	ACGT	3 cut(s)	645, 762, 833
TaqI	TCGA	2 cut(s)	120, 192
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	133, 176, 697, 735
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	329, 803
Tru9I	TTAA	2 cut(s)	329, 803
TseFI	GTSAC	2 cut(s)	256, 546
TseI	GCWGC	4 cut(s)	13, 416, 419, 782
Tsp45I	GTSAC	2 cut(s)	256, 546
TspDTI	ATGAA	2 cut(s)	58, 607
TspGWI	ACGGA	1 cut(s)	284
TspMI	CCCGGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	176, 735
XceI	RCATGY	1 cut(s)	706
XmaI	CCCGGG	1 cut(s)	244
XmnI	GAANNNNTTC	2 cut(s)	167, 188
XspI	CTAG	1 cut(s)	725
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.