Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0007694

Physical Location & Seq

Genomic Coordinates Forward (+)

113540 .. 123023

Gene Structure 9484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4542 bp

atggtcgggaaaccaatctccgagcacgtcaacggcggaacaaacagttcgaaaaccacctcgcccaagccgttctcgtcagatctcctgagcaacctctcattcaaaaccctaaaactgaaaacgaagcagcaggagctcctgatccgagtctccatcctctgcttagtctatgtcttggcattcatcactcgccttttcagcgtgcttcgctatgagtccatgatccacgagttcgatccctatttcaattaccgcacaaccctctacttgaccgagaaaggcttctacgaattctggaactggttcgattctgagagctggtaccctttgggccggatcatcggtggcactctctacccgggcctcatggtcaccgccgccctcatctactgggctctccgcttcctccgtttcgcagtccacattcgtgaagtctgcgttttaaccgcgccatttttcgcctccaacaccaccatcgttgcttatttgttcggaaaggagatttgggacaccggcgctggccttgttgcagctgcattgatcgccatttgccccggttacatctccagatcggtggccggctcctatgacaatgagggtgtggccattttcgccctgttgttgacattttacctgtttgtcaaggctgtaaacacagggtcactcgcttggtccttggcctcggccttcggctacttctacatggtttcggcttggggaggttatgtgttcattatcaacttggttcctctttacgttttggtgctcttgattaccggacgctactccatgaggttgtatgtggcttataattgcatgtatattgtggggatgttgctagctatgcaaattcggtttgttgggtttcagcacgtgcagtctggggagcatatggctgccatgggagttttcttcttaatgcaggtattttatttccttgactgggttaagcacctgctaagtgacacaaagatgttccaagcctttctaaggatcactgtgacctgtgcagtaggtgttggtgctgttgccctgggacttggcactgcatctgggtatatctctccatggacaggccggttttattctttgcttgatccaacatacgcaaaggatcacattccaattattgcatctgtctctgagcatcagccaacggcgtggtcatcttttatgtttgatttccatatcttactcttcctcttccctgctggtctctacttttgcttcaagcgattgtctgatgcgacgatatttatagttatgtatggccttacaagcatgtatttcgctggtgtcatggttcggttaattcttgttgccacacctgctgtttgtctcataagtgccattgctgtctctgcgactataaagaatttgacacagttggtaagggcgaaggacaaggttccccagactggttctaccaaaggagccagtagtgcaaagggttcttctaagggttcaattgatcactctcagccttttcaaaaaaatggtgctattgccttactttttggtgcattttacttgcttagcaagtatgcaacccattgtacctgggtcacatctgaggcatactcgtctccatcaattgtcctggctgcaaggggtgctcatgggaacagggtcatttttgatgattatcgtgaggcatacttttggcttcgtcagaatactcctccggatgctaaagtgatgtcatggtgggattatggctaccaaatcacggcaatgggaaatagaactgttatagttgacaataacacctggaacaatacacacattgctaccgttgggcgtgcaatgtcatcttatgaagatgaggcatatgatataatgagatctcttgacgtggattatgttctagttgtgtttggtggtgttactggttattcttctgatgatattaacaaatttctgtggatggtgagaattgggggtggagtatttcctgtaattaaggaacctgattaccttgttaatggagaatatcgtgttgacaaaggtgcagctccaaaaatgttgaactgtctcatgtacaagctgtcttactacagatttggagaactgactacagagtatggcaaacctcctgggtatgatcgtgcaaggggggttgaaattggaaataaggatgtcaaactcgaatacttggaagaggcattcacaacatccaattggattgttcgtatttacaaggtcaaaccacctaataataggtgggtttccaggatgacgagaaaggatgagaatctcaccgctctctgggctctgaatgctgtcgacacccaccaccaccacattgtggagactcctccagctcgcaccaccgttgaaatccccgtcacctgttaccagctcattggtgttcctgatcgagccgagaaagatgaggttgttaaatcagtcatggatttgaagagtgctgaaattgaagaaggttacaccatggacgctgttggatatcgccaggttctcttaatggatgtgagagataagcttctttttgaaccagaatatgctggtaatattaaggaaaagatcccacctaagtcatccttacgaattccttgggcatggttgccaggtgctctttgcctccttcaagaggttgggcaggttaagcttgtgcaagatattggccgcgtagctgttcagcatccagatgctaaaccgtatattcatgatctacttctttctatggcattagctgagtgtgcaactgcaaagatgggttttgaaaagaacaaggtatcccaaggatttgaagctcttgctcgtgctcaatgccttctaaggagtaaaaagtctcttgggaaactatcattgttgtctcagatagaagagtctttggaggaacttgcaccggcctgcactttggaattgctaggcatgcctcactcaccagagaatgctgaaagaagacgaggagcaattgcagccttgcgtgaactggttagacaagggcttggtgtggaaacatcatgccgagtccacgactggccgtgcttcctgagccaagcacttaatagactaatggcttcagagatagttgatcttcttccatgggatgatttagctattacaaggaagaataagaaatcacttgattcgcagaatcaaagggttgtaattgatttcaattgcttctacatggtattaatagcttatgttgccctggggttttcaagcaagcaacaagaattgattgacaaagcaaaaactatatgtgagtgtctgattgcatcagagggttgtgatttaaaacttgaggaagctttttgcttgtttcttcttggtcagggtaatgaggctgcagttgttgaaaagcttcagaagctggaattaaattcaagttctgctccgcggatgtcaatcaaagggaaggaaattaagaatagtgatggtgcaaagcaatcactggaaatgtggctgaaggatgctgtccttgctgtctttccagactcacgcgattgccctccatcattggctaactattttggtggtgaaaagaggactcctgttagcaagaaaagtaaattagctccacagactttacctattttaagtcatagaccaatgtcgactactcttgtgtcagagcggagagatttcgatgactctctttcccacatgaactcttctcaacatcttggaacagctgttaaacagttggctccaactgatctgcaaagccccttgatattgggcaagactggtggtgggagcagtggtaatgctggatctgttcaaatgaaaaggaatcttggcatgcgccatggtaaagtttgggtaggttggctcacaagaggatttctggtgggaaggatcacttttgttgctgtagtcgggtgcattgtttttgttaccttaaagttaacgggcatgaaaggaaatgagatcagaagtgcttctaaacgagcccacagtaaaccaaatttgcacacaagttccgttgcttggacaacagattcatctgtagatttccgtctgggccctgcttatatcaagggcaatggactcgctggtggacttaagaaggttttgatgacttttatgaagcaggtaaggaactgtgcagatactggaaatccaccagtttcgcatctgttgtcttcaacttctttgtgccggagaccaatgtctgttgaggaagcggaagatcttgtcaagcgatggcaagaaattaaagctgaagctctggggcccagccatgaaattcagagcctctctgaagtccttgacgagtcaatgcttcttcagtggcaagctttggctgatgctgcaaaagcaaggtcttgtcattggaaatttgttttgctacaattgtccgtcctgcgagctgaaattttatcagatgaggttggagagacggcagaaattgaggctctgctagaggaagcagccgaacttgttaatgagtctgaacaaaagaacccaagttattacagcacctatagaatttggtatgttctaagaaggcaagaagatggttcctggaggttctgtgaaggggaggttcaaataccatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

1513

Amino Acids

168.89

Weight (kDa)

8.46

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19180 AT3G19180
fragaria_vesca	FvH4_5g18390 FvH4_5g18390 FvH4_5g18390
malus_domestica	MD06G1239700.v1.1 MD14G1245800.v1.1
prunus_persica	Prupe.5G243600_v2.0.a1
pyrus_communis	pycom06g21520 pycom14g20670
rosa_chinensis	RchiOBHm_Chr7g0177091
rosa_laevigata	RLG00000005557
rosa_multiflora	Rmu_co8345735.1_g000001 Rmu_sc0005310.1_g000023 Rmu_sc0005912.1_g000002
rosa_roxburghii	Rroxscaffold_3G00276100
rosa_rugosa	Rorug06G0403700
rosa_samantha	Rh7AG003100 Rh7BG003500 Rh7BG003600 Rh7CG002700 Rh7CG002800 Rh7DG003200
rosa_wichuraiana	Rw7G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AarI	CACCTGC	2 cut(s)	966, 1339
Acc36I	ACCTGC	5 cut(s)	916, 966, 1339, 2614, 4060
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	2311
AccBSI	CCGCTC	2 cut(s)	2267, 3610
AccI	GTMKAC	2 cut(s)	2289, 3590
AccII	CGCG	4 cut(s)	452, 2652, 3373, 3477
AccIII	TCCGGA	1 cut(s)	1687
AcoI	YGGCCR	4 cut(s)	579, 606, 2647, 3008
AcuI	CTGAAG	6 cut(s)	3033, 3323, 3461, 4221, 4250, 4260
AcvI	CACGTG	1 cut(s)	877
AdeI	CACNNNGTG	1 cut(s)	2311
AfaI	GTAC	3 cut(s)	326, 1561, 2045
AfiI	CCNNNNNNNGG	9 cut(s)	946, 993, 1076, 1421, 1732, 2271, 2311, 2614, 3966
AflII	CTTAAG	1 cut(s)	4040
AjiI	CACGTC	2 cut(s)	28, 1858
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AleI	CACNNNNGTG	1 cut(s)	429
AloI	GAACNNNNNNTCC	2 cut(s)	2744, 2776
Alw21I	GWGCWC	6 cut(s)	27, 141, 771, 1621, 2599, 2791
AlwNI	CAGNNNCTG	2 cut(s)	3346, 4091
Ama87I	CYCGRG	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	1687
ApaI	GGGCCC	2 cut(s)	4004, 4215
ArsI	GACNNNNNNTTYG	2 cut(s)	4286, 4318
AseI	ATTAAT	1 cut(s)	3167
Asp700I	GAANNNNTTC	4 cut(s)	284, 305, 3336, 3916
Asp718I	GGTACC	1 cut(s)	324
AspLEI	GCGC	3 cut(s)	454, 521, 3783
AspS9I	GGNCC	7 cut(s)	334, 364, 675, 4000, 4001, 4211, 4212
AsuC2I	CCSGG	3 cut(s)	362, 363, 558
AsuHPI	GGTGA	6 cut(s)	367, 1945, 2254, 2344, 2901, 3524
AsuII	TTCGAA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	841
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	675
BaeGI	GKGCMC	2 cut(s)	4004, 4215
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	6 cut(s)	141, 400, 2278, 3931, 4004, 4215
BauI	CACGAG	2 cut(s)	230, 2784
BbrPI	CACGTG	1 cut(s)	877
BbsI	GAAGAC	2 cut(s)	2935, 4113
Bbv12I	GWGCWC	6 cut(s)	27, 141, 771, 1621, 2599, 2791
BccI	CCATC	9 cut(s)	164, 485, 1600, 1924, 2731, 3404, 3496, 4176, 4490
BceAI	ACGGC	6 cut(s)	49, 55, 1176, 1749, 2995, 4395
BcgI	CGANNNNNNTGC	4 cut(s)	1273, 1307, 4009, 4043
BciVI	GTATCC	1 cut(s)	2770
BclI	TGATCA	1 cut(s)	1474
BcnI	CCSGG	3 cut(s)	362, 363, 558
BfaI	CTAG	4 cut(s)	842, 1871, 2894, 4400
BfmI	CTRYAG	6 cut(s)	2059, 2079, 3321, 3849, 3984, 4462
BfoI	RGCGCY	1 cut(s)	522
BfrI	CTTAAG	1 cut(s)	4040
BfuAI	ACCTGC	5 cut(s)	916, 966, 1339, 2614, 4060
BfuI	GTATCC	1 cut(s)	2770
BglII	AGATCT	3 cut(s)	82, 1847, 4168
BlpI	GCTNAGC	1 cut(s)	1538
Bme18I	GGWCC	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	361
BmgBI	CACGTC	2 cut(s)	28, 1858
BmgT120I	GGNCC	7 cut(s)	334, 364, 675, 4000, 4001, 4211, 4212
BmrI	ACTGGG	2 cut(s)	403, 955
BmtI	GCTAGC	1 cut(s)	845
BmuI	ACTGGG	2 cut(s)	403, 955
BoxI	GACNNNNGTC	2 cut(s)	3586, 4147
BpiI	GAAGAC	2 cut(s)	2935, 4113
BplI	GAGNNNNNCTC	2 cut(s)	1568, 1600
BpmI	CTGGAG	3 cut(s)	553, 2307, 4525
Bpu10I	CCTNAGC	2 cut(s)	89, 3020
Bpu1102I	GCTNAGC	1 cut(s)	1538
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	3296
BpuMI	CCSGG	3 cut(s)	362, 363, 558
BsaAI	YACGTR	1 cut(s)	877
BsaBI	GATNNNNATC	3 cut(s)	1647, 2256, 3380
BsaI	GGTCTC	2 cut(s)	1223, 4135
BsaWI	WCCGGW	2 cut(s)	779, 1687
BsaXI	ACNNNNNCTCC	6 cut(s)	714, 744, 3724, 3754, 4498, 4528
Bsc4I	CCNNNNNNNGG	9 cut(s)	946, 993, 1076, 1421, 1732, 2271, 2311, 2614, 3966
Bse118I	RCCGGY	4 cut(s)	515, 581, 1080, 2872
Bse3DI	GCAATG	5 cut(s)	1353, 1743, 1788, 1815, 4027
Bse8I	GATNNNNATC	3 cut(s)	1647, 2256, 3380
BseAI	TCCGGA	1 cut(s)	1687
BseJI	GATNNNNATC	3 cut(s)	1647, 2256, 3380
BseLI	CCNNNNNNNGG	9 cut(s)	946, 993, 1076, 1421, 1732, 2271, 2311, 2614, 3966
BseMI	GCAATG	5 cut(s)	1353, 1743, 1788, 1815, 4027
BseMII	CTCAG	8 cut(s)	80, 306, 1137, 1496, 1566, 2709, 2855, 3011
BseRI	GAGGAG	3 cut(s)	1674, 2310, 2949
BseSI	GKGCMC	2 cut(s)	4004, 4215
BseYI	CCCAGC	1 cut(s)	4214
BsgI	GTGCAG	5 cut(s)	899, 1032, 2034, 2863, 4104
Bsh1236I	CGCG	4 cut(s)	452, 2652, 3373, 3477
BshNI	GGYRCC	1 cut(s)	324
BsiHKAI	GWGCWC	6 cut(s)	27, 141, 771, 1621, 2599, 2791
BsiHKCI	CYCGRG	1 cut(s)	361
BslFI	GGGAC	2 cut(s)	524, 1053
BslI	CCNNNNNNNGG	9 cut(s)	946, 993, 1076, 1421, 1732, 2271, 2311, 2614, 3966
BsmBI	CGTCTC	2 cut(s)	1593, 4370
BsmFI	GGGAC	2 cut(s)	524, 1053
BsmI	GAATGC	4 cut(s)	182, 2168, 2287, 2923
Bso31I	GGTCTC	2 cut(s)	1223, 4135
BsoBI	CYCGRG	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	50
Bsp120I	GGGCCC	2 cut(s)	4000, 4211
Bsp13I	TCCGGA	1 cut(s)	1687
Bsp1407I	TGTACA	1 cut(s)	2043
Bsp1720I	GCTNAGC	1 cut(s)	1538
Bsp19I	CCATGG	5 cut(s)	903, 1070, 2454, 3071, 3784
BspCNI	CTCAG	8 cut(s)	81, 307, 1138, 1495, 1567, 2710, 2854, 3012
BspEI	TCCGGA	1 cut(s)	1687
BspFNI	CGCG	4 cut(s)	452, 2652, 3373, 3477
BspHI	TCATGA	2 cut(s)	2689, 4538
BspMAI	CTGCAG	1 cut(s)	3325
BspMI	ACCTGC	5 cut(s)	916, 966, 1339, 2614, 4060
BspOI	GCTAGC	1 cut(s)	845
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	324
BspTI	CTTAAG	1 cut(s)	4040
BspTNI	GGTCTC	2 cut(s)	1223, 4135
BsrBI	CCGCTC	2 cut(s)	2267, 3610
BsrDI	GCAATG	5 cut(s)	1353, 1743, 1788, 1815, 4027
BsrFI	RCCGGY	4 cut(s)	515, 581, 1080, 2872
BsrGI	TGTACA	1 cut(s)	2043
BssAI	RCCGGY	4 cut(s)	515, 581, 1080, 2872
BssSI	CACGAG	2 cut(s)	230, 2784
BssT1I	CCWWGG	8 cut(s)	678, 903, 1070, 2454, 2576, 2764, 3071, 3784
Bst2BI	CACGAG	2 cut(s)	230, 2784
Bst6I	CTCTTC	6 cut(s)	1205, 1211, 2157, 2420, 2844, 3652
BstAFI	CTTAAG	1 cut(s)	4040
BstAPI	GCANNNNNTGC	1 cut(s)	1616
BstAUI	TGTACA	1 cut(s)	2043
BstBAI	YACGTR	1 cut(s)	877
BstBI	TTCGAA	1 cut(s)	50
BstDSI	CCRYGG	6 cut(s)	903, 1070, 2454, 3071, 3371, 3784
BstEII	GGTNACC	1 cut(s)	373
BstENI	CCTNNNNNAGG	2 cut(s)	991, 2612
BstFNI	CGCG	4 cut(s)	452, 2652, 3373, 3477
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	3 cut(s)	454, 521, 3783
BstNSI	RCATGY	4 cut(s)	823, 1288, 2902, 3781
BstPAI	GACNNNNGTC	2 cut(s)	3586, 4147
BstPI	GGTNACC	1 cut(s)	373
BstSFI	CTRYAG	6 cut(s)	2059, 2079, 3321, 3849, 3984, 4462
BstSLI	GKGCMC	2 cut(s)	4004, 4215
BstUI	CGCG	4 cut(s)	452, 2652, 3373, 3477
BstV2I	GAAGAC	2 cut(s)	2935, 4113
BstX2I	RGATCY	5 cut(s)	82, 1847, 2547, 3749, 4168
BstXI	CCANNNNNNTGG	3 cut(s)	577, 1164, 2369
BstYI	RGATCY	5 cut(s)	82, 1847, 2547, 3749, 4168
BsuI	GTATCC	1 cut(s)	2770
BtgI	CCRYGG	6 cut(s)	903, 1070, 2454, 3071, 3371, 3784
BtgZI	GCGATG	1 cut(s)	4195
BtrI	CACGTC	2 cut(s)	28, 1858
BtsI	GCAGTG	2 cut(s)	1047, 3742
BtsIMutI	CAGTG	5 cut(s)	999, 1047, 3425, 3742, 4274
BveI	ACCTGC	5 cut(s)	916, 966, 1339, 2614, 4060
CaiI	CAGNNNCTG	2 cut(s)	3346, 4091
CciI	TCATGA	2 cut(s)	2689, 4538
CfoI	GCGC	3 cut(s)	454, 521, 3783
Cfr10I	RCCGGY	4 cut(s)	515, 581, 1080, 2872
Cfr13I	GGNCC	7 cut(s)	334, 364, 675, 4000, 4001, 4211, 4212
Cfr42I	CCGCGG	1 cut(s)	3374
Cfr9I	CCCGGG	1 cut(s)	361
CseI	GACGC	2 cut(s)	792, 2468
Csp6I	GTAC	3 cut(s)	325, 1560, 2044
CspCI	CAANNNNNGTGG	4 cut(s)	463, 498, 3706, 3741
CviQI	GTAC	3 cut(s)	325, 1560, 2044
DraI	TTTAAA	1 cut(s)	3270
DraIII	CACNNNGTG	1 cut(s)	2311
EaeI	YGGCCR	4 cut(s)	579, 606, 2647, 3008
Eam1104I	CTCTTC	6 cut(s)	1205, 1211, 2157, 2420, 2844, 3652
EarI	CTCTTC	6 cut(s)	1205, 1211, 2157, 2420, 2844, 3652
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	8 cut(s)	678, 903, 1070, 2454, 2576, 2764, 3071, 3784
Eco24I	GRGCYC	6 cut(s)	141, 400, 2278, 3931, 4004, 4215
Eco31I	GGTCTC	2 cut(s)	1223, 4135
Eco32I	GATATC	1 cut(s)	2471
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	6 cut(s)	3033, 3323, 3461, 4221, 4250, 4260
Eco72I	CACGTG	1 cut(s)	877
Eco88I	CYCGRG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	2 cut(s)	991, 2612
EcoO109I	RGGNCCY	2 cut(s)	4001, 4211
EcoO65I	GGTNACC	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	293, 2571
EcoRV	GATATC	1 cut(s)	2471
EcoT14I	CCWWGG	8 cut(s)	678, 903, 1070, 2454, 2576, 2764, 3071, 3784
EcoT38I	GRGCYC	6 cut(s)	141, 400, 2278, 3931, 4004, 4215
ErhI	CCWWGG	8 cut(s)	678, 903, 1070, 2454, 2576, 2764, 3071, 3784
Esp3I	CGTCTC	2 cut(s)	1593, 4370
FalI	AAGNNNNNCTT	4 cut(s)	2549, 2581, 3823, 3855
FaqI	GGGAC	2 cut(s)	524, 1053
FauNDI	CATATG	2 cut(s)	894, 1834
FbaI	TGATCA	1 cut(s)	1474
FblI	GTMKAC	2 cut(s)	2289, 3590
FriOI	GRGCYC	6 cut(s)	141, 400, 2278, 3931, 4004, 4215
FspBI	CTAG	4 cut(s)	842, 1871, 2894, 4400
GlaI	GCGC	3 cut(s)	453, 520, 3782
GsaI	CCCAGC	1 cut(s)	4218
GsuI	CTGGAG	3 cut(s)	553, 2307, 4525
HaeII	RGCGCY	1 cut(s)	522
HgaI	GACGC	2 cut(s)	792, 2468
HhaI	GCGC	3 cut(s)	454, 521, 3783
Hin6I	GCGC	3 cut(s)	452, 519, 3781
HinP1I	GCGC	3 cut(s)	452, 519, 3781
HincII	GTYRAC	7 cut(s)	31, 627, 1762, 2005, 2290, 3591, 3885
HindII	GTYRAC	7 cut(s)	31, 627, 1762, 2005, 2290, 3591, 3885
HindIII	AAGCTT	5 cut(s)	2504, 2630, 3282, 3335, 4275
HpaI	GTTAAC	1 cut(s)	3885
HphI	GGTGA	6 cut(s)	367, 1945, 2254, 2344, 2901, 3524
Hpy99I	CGWCG	1 cut(s)	1255
HpyCH4IV	ACGT	4 cut(s)	27, 759, 876, 1857
HpySE526I	ACGT	4 cut(s)	27, 759, 876, 1857
HspAI	GCGC	3 cut(s)	452, 519, 3781
Kpn2I	TCCGGA	1 cut(s)	1687
KpnI	GGTACC	1 cut(s)	328
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	1474
KspAI	GTTAAC	1 cut(s)	3885
KspI	CCGCGG	1 cut(s)	3374
MaeI	CTAG	4 cut(s)	842, 1871, 2894, 4400
MaeII	ACGT	4 cut(s)	27, 759, 876, 1857
MbiI	CCGCTC	2 cut(s)	2267, 3610
MfeI	CAATTG	6 cut(s)	1470, 1596, 2182, 2940, 3148, 4331
MflI	RGATCY	5 cut(s)	82, 1847, 2547, 3749, 4168
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MmeI	TCCRAC	5 cut(s)	492, 1127, 2446, 3710, 4351
Mox20I	TGGCCA	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	1687
MroNI	GCCGGC	1 cut(s)	581
MroXI	GAANNNNTTC	4 cut(s)	284, 305, 3336, 3916
MscI	TGGCCA	1 cut(s)	608
MslI	CAYNNNNRTG	4 cut(s)	429, 974, 1736, 2670
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	3 cut(s)	536, 3373, 3668
MspCI	CTTAAG	1 cut(s)	4040
MunI	CAATTG	6 cut(s)	1470, 1596, 2182, 2940, 3148, 4331
Mva1269I	GAATGC	4 cut(s)	182, 2168, 2287, 2923
MvnI	CGCG	4 cut(s)	452, 2652, 3373, 3477
NaeI	GCCGGC	1 cut(s)	583
NciI	CCSGG	3 cut(s)	362, 363, 558
NcoI	CCATGG	5 cut(s)	903, 1070, 2454, 3071, 3784
NdeI	CATATG	2 cut(s)	894, 1834
NgoMIV	GCCGGC	1 cut(s)	581
NheI	GCTAGC	1 cut(s)	841
NmeAIII	GCCGAG	3 cut(s)	665, 2413, 3020
NmuCI	GTSAC	6 cut(s)	373, 663, 965, 1003, 1567, 2350
NspI	RCATGY	4 cut(s)	823, 1288, 2902, 3781
NspV	TTCGAA	1 cut(s)	50
OliI	CACNNNNGTG	1 cut(s)	429
PaeI	GCATGC	2 cut(s)	2902, 3781
PagI	TCATGA	2 cut(s)	2689, 4538
PaqCI	CACCTGC	2 cut(s)	966, 1339
PasI	CCCWGGG	2 cut(s)	1036, 3184
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	4 cut(s)	182, 2168, 2287, 2923
PdiI	GCCGGC	1 cut(s)	583
PdmI	GAANNNNTTC	4 cut(s)	284, 305, 3336, 3916
PfeI	GAWTC	6 cut(s)	311, 2257, 3116, 3124, 3769, 3977
PflMI	CCANNNNNTGG	1 cut(s)	2311
PfoI	TCCNGGA	2 cut(s)	2234, 4502
PmaCI	CACGTG	1 cut(s)	877
PmlI	CACGTG	1 cut(s)	877
Ppu21I	YACGTR	1 cut(s)	877
PshAI	GACNNNNGTC	2 cut(s)	3586, 4147
PshBI	ATTAAT	1 cut(s)	3167
PsiI	TTATAA	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	141
PspCI	CACGTG	1 cut(s)	877
PspEI	GGTNACC	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	4214
PspOMI	GGGCCC	2 cut(s)	4000, 4211
PspPI	GGNCC	7 cut(s)	334, 364, 675, 4000, 4001, 4211, 4212
PstI	CTGCAG	1 cut(s)	3325
PstNI	CAGNNNCTG	2 cut(s)	3346, 4091
PsuI	RGATCY	5 cut(s)	82, 1847, 2547, 3749, 4168
PvuII	CAGCTG	2 cut(s)	536, 3668
RsaI	GTAC	3 cut(s)	326, 1561, 2045
RsaNI	GTAC	3 cut(s)	325, 1560, 2044
RseI	CAYNNNNRTG	4 cut(s)	429, 974, 1736, 2670
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	3374
SalI	GTCGAC	2 cut(s)	2288, 3589
Sau96I	GGNCC	7 cut(s)	334, 364, 675, 4000, 4001, 4211, 4212
SfcI	CTRYAG	6 cut(s)	2059, 2079, 3321, 3849, 3984, 4462
Sfr303I	CCGCGG	1 cut(s)	3374
SfuI	TTCGAA	1 cut(s)	50
SgrAI	CRCCGGYG	1 cut(s)	515
SgrBI	CCGCGG	1 cut(s)	3374
SinI	GGWCC	1 cut(s)	675
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	4 cut(s)	429, 974, 1736, 2670
SmlI	CTYRAG	2 cut(s)	3275, 4040
SmoI	CTYRAG	2 cut(s)	3275, 4040
SphI	GCATGC	2 cut(s)	2902, 3781
SspI	AATATT	1 cut(s)	2536
SspMI	CTAG	4 cut(s)	842, 1871, 2894, 4400
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	8 cut(s)	678, 903, 1070, 2454, 2576, 2764, 3071, 3784
TaiI	ACGT	4 cut(s)	30, 762, 879, 1860
TaqI	TCGA	8 cut(s)	50, 237, 309, 2151, 2289, 2383, 3590, 3621
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	2043
TauI	GCSGC	2 cut(s)	383, 2652
TfiI	GAWTC	6 cut(s)	311, 2257, 3116, 3124, 3769, 3977
TscAI	CASTG	5 cut(s)	1006, 1054, 3432, 3742, 4274
TseFI	GTSAC	6 cut(s)	373, 663, 965, 1003, 1567, 2350
Tsp45I	GTSAC	6 cut(s)	373, 663, 965, 1003, 1567, 2350
TspGWI	ACGGA	4 cut(s)	401, 3949, 3983, 4327
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	5 cut(s)	1006, 1054, 3432, 3742, 4274
Van91I	CCANNNNNTGG	1 cut(s)	2311
Vha464I	CTTAAG	1 cut(s)	4040
VpaK11BI	GGWCC	1 cut(s)	675
VspI	ATTAAT	1 cut(s)	3167
XagI	CCTNNNNNAGG	2 cut(s)	991, 2612
XceI	RCATGY	4 cut(s)	823, 1288, 2902, 3781
XmaI	CCCGGG	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	2289, 3590
XmnI	GAANNNNTTC	4 cut(s)	284, 305, 3336, 3916
XspI	CTAG	4 cut(s)	842, 1871, 2894, 4400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.