Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007694

Physical Location & Seq

Genomic Coordinates Forward (+)

67371715 .. 67377473

Gene Structure 5759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGCTACTCTCTGTCACGCTCTCCTCACCATTCCACCTTGCTCTTGCTTCTGTCGAACTGCTCGAAATCACAATGTCGTCTTCTGCGTACAAGTCTGTCACTCCAGAATTGGCATTTCTAGGGTTTCCAGGATGAAGAGAAAGGATGAGAATCTCACCGCTCTCTGGGCTCTGAATGCTGTCGACACCCACCACCACCACCACATTGTGGAGACTCCTCCAGCTCGCACCACCGTTGAAATCCCCGTCACCTGTTACCAGCTCATTGGTGTTCCTGATCGAGCCGAGAAAGATGAGGTTGTTAAATCAGTCATGGATTTGAAGAGTGCTGAAATTGAAGAAGGTTACACCATGGACGCTGTTGGATATCGCCAGGTTCTCTTAATGGATGTGAGAGATAAGCTTCTTTTTGAACCAGAATATGCTGGTAATATCAAGGACAAGATCCCACCTAAGTCATCCTTACGAATTCCTTGGGCCTGGTTGCCAGGTGCTCTTTGCCTCCTTCAAGAGGTTGGGCAAGTTAAGCTTGTGCAAGATATTGGCCGCGTAGCTGTTCAGCATCCAGATGCTAAACCTTATATTCATGATCTACTTCTTTCTATGGCATTAGCTGAGTGTGCAACTGCAAAGATGGGTTTTGAAAAGAACAAGGTATCCCAAGGATTTGAAGCTCTTGCTCGTGCTCAATGCCTTCTAAGGAGTAAAAAGTCTCTTGGGAAACTATCATTGTTGTCTCAGATAGAAGAGTCTTTGGAGGAGCTTGCACCGGCCTGCACTTTGGAATTGCTAGGCATGCCTCACTCACCAGAGAATGCTGAAAGAAGACGAGGAGCAATTGCAGCCTTGCGTGAACTGGTTAGACAAGGGCTTGGTGTGGAAACATCATGCCGAGTCCATGACTGGCCGTGCTTCCTGAGCCAAGCACTTAATAGACTAATGGCTTCAGAGATAGTTGATCTTCTTCCATGGGATGATTTAGCTATTACAAGGAAGAATAAGAAATCACTTGATTCGCAGAATCAAAGGGTTGTAATTGATTTCAATTGCTTCTACATGGTATTAATAGCTCATGTTGCCCTGGGGTTTTCAAGCAAGCAACAAGAATTGATTGACAAAGCAAAAACTATATGTGAGTGTCTGATTGCATCAGAGGGTTGTGATCTAAAACTTGAGGAAGCTTTTTGCTTGTTTCTTCTTGGTCAGGGTAATGAGGCTGCAGTTGTTGAAAAGCTTCAGAAGCTGGAATTAAATTCAAGTTCTGCTTCGCGGATGTCAATCACAGGGAAGGAAATTAAGAATAGTGATGGTGCAAAGCAATCATTGGAAATGTGGCTGAAGGATGCTGTCCTTGCTGTCTTTCCAGACTCACGCGATTGCCCTCCATCATTGGCTAACTATTTTGGTGGTGAAAAGAGGACTCCTGTTAGCAAGAAAAGTAAATTAGCTCCACAGACTCTGCCTATTTTAAGTCATAGACCAATGTCGACTACTCTTGTGTCAGAGCGGAGAGATTTCGATGACTCTCTTTCCCACATGAACTCTTCTCAACATCTTGGAACAGCTGTTAAACAGTTGGCTCCAACTGATTTGCAAAGCCCCTTGATATTGGGCAAGACTGGCGGTGGGAGCAGTGGTAATGCTGGATCTGTTCAAATGAAAAGGAATCTTGGCATGCGCCATGGTAAAGTTTGGGTAGGTTGGCTCACAAGAGGATTTCTGGTGGGAAGGATCACTTTTGTTGCTGTAGTCGGGTGCATTGTTTTTGTTGCCTTAAAGTTAACGGGCATGAAAGGAAATGAGATCAGAAGTGCTTCTAAACGAGCCCACAGTAAACCAAATTTGCACACAAGTTCTGTTGCTTGGACAACAGATTCATCTGTAGATTTCCGTCTGGGCCCTGCTTATATCAAGGGCAATGGACTCGCTGGTGGACTTAAGAAGGTTTTGATGACTTTTATGAAGCAGGTAAGGAACTGCGCAGATACTGGAAATCCACCAGTTTCGCATCTGTTGTCTTCAACTTCTTTGTGCCGGAGACCAATGTCTGTTGAGGAAGCGGAAGATCTTGTCAATCGATGGCAAGAAATTAAAGCTGAAGCTCTGGGGCCCAGCCATGAAATTCAGAGCCTCTCTGAAGTCCTTGACGAGTCAATGCTTCTTCAGTGGCAAGCTTTGGCTGATGCTGCAAAAGCAAGGTCTTGTCATTGGAAATTTGTTTTGCTACAATTGTCCGTCCTGCGAGCTGAAATTTTATCAGATGAGGTTGGAGAGACGGCAGAAATTGAGGCTCTGCTAGAGGAAGCAGCCGAACTTGTTAATGAGTCTGAACAAAAGAACCCAAGTTATTACAGCACCTATAGAATTTGGTATGTTCTAAGAAGGCAAGAAGATGGTTCCTGGAGGTTCTGTGAAGGGGAGGTTCAAACACCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00020 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

DUF4101

Protein Analysis

812

Amino Acids

89.94

Weight (kDa)

7.73

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	156 - 302	1.7e-47	Plastid division regulator ARM repeat
ARC6	PF23468	350 - 469	3.5e-09	Plastid division regulator alpha solenoid domain
ARC6-like_IMS	PF13355	687 - 803	9.2e-30	ARC6-like, IMS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19180 AT3G19180
fragaria_vesca	FvH4_5g18390 FvH4_5g18390 FvH4_5g18390
malus_domestica	MD06G1239700.v1.1 MD14G1245800.v1.1
prunus_persica	Prupe.5G243600_v2.0.a1
pyrus_communis	pycom06g21520 pycom14g20670
rosa_chinensis	RchiOBHm_Chr7g0177091
rosa_laevigata	RLG00000005557
rosa_multiflora	Rmu_co8345735.1_g000001 Rmu_sc0005310.1_g000023 Rmu_sc0005912.1_g000002
rosa_roxburghii	Rroxscaffold_3G00276100
rosa_rugosa	Rorug06G0403700
rosa_samantha	Rh7AG003100 Rh7BG003500 Rh7BG003600 Rh7CG002700 Rh7CG002800 Rh7DG003200
rosa_wichuraiana	Rw7G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1981
Acc36I	ACCTGC	1 cut(s)	1957
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccBSI	CCGCTC	2 cut(s)	161, 1507
AccI	GTMKAC	2 cut(s)	183, 1487
AccII	CGCG	3 cut(s)	549, 1270, 1374
AciI	CCGC	6 cut(s)	159, 547, 1270, 1507, 1623, 2060
AclWI	GGATC	3 cut(s)	439, 1654, 1739
AcoI	YGGCCR	2 cut(s)	544, 905
AcsI	RAATTY	7 cut(s)	468, 1252, 1840, 2121, 2213, 2250, 2364
AcuI	CTGAAG	6 cut(s)	930, 1220, 1358, 2118, 2147, 2157
AdeI	CACNNNGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	165, 208, 511
AflII	CTTAAG	1 cut(s)	1937
AjnI	CCWGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
AloI	GAACNNNNNNTCC	2 cut(s)	641, 673
Alw21I	GWGCWC	2 cut(s)	496, 688
Alw26I	GTCTC	5 cut(s)	206, 717, 741, 2032, 2267
AlwI	GGATC	3 cut(s)	439, 1654, 1739
AlwNI	CAGNNNCTG	3 cut(s)	1243, 1459, 1988
AoxI	GGCC	6 cut(s)	477, 544, 771, 905, 1897, 2108
ApaI	GGGCCC	2 cut(s)	1901, 2112
ApeKI	GCWGC	4 cut(s)	842, 1217, 2186, 2306
ApoI	RAATTY	7 cut(s)	468, 1252, 1840, 2121, 2213, 2250, 2364
ArsI	GACNNNNNNTTYG	2 cut(s)	2183, 2215
AseI	ATTAAT	1 cut(s)	1064
Asp700I	GAANNNNTTC	2 cut(s)	1233, 1813
AspLEI	GCGC	2 cut(s)	1680, 1982
AspS9I	GGNCC	5 cut(s)	477, 1897, 1898, 2108, 2109
AsuHPI	GGTGA	5 cut(s)	19, 148, 241, 798, 1421
BaeGI	GKGCMC	2 cut(s)	1901, 2112
BanII	GRGCYC	4 cut(s)	172, 1828, 1901, 2112
BauI	CACGAG	1 cut(s)	681
BbsI	GAAGAC	3 cut(s)	73, 832, 2010
Bbv12I	GWGCWC	2 cut(s)	496, 688
BbvI	GCAGC	4 cut(s)	854, 1204, 2173, 2318
BccI	CCATC	5 cut(s)	628, 1301, 1393, 2073, 2387
BceAI	ACGGC	2 cut(s)	892, 2292
BcgI	CGANNNNNNTGC	2 cut(s)	1906, 1940
BciT130I	CCWGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
BciVI	GTATCC	1 cut(s)	667
BcoDI	GTCTC	5 cut(s)	206, 717, 741, 2032, 2267
BfaI	CTAG	3 cut(s)	120, 791, 2297
BfmI	CTRYAG	4 cut(s)	1218, 1746, 1881, 2359
BfrI	CTTAAG	1 cut(s)	1937
BfuAI	ACCTGC	1 cut(s)	1957
BfuI	GTATCC	1 cut(s)	667
BglII	AGATCT	1 cut(s)	2065
BisI	GCNGC	5 cut(s)	547, 843, 1218, 2187, 2307
BlsI	GCNGC	5 cut(s)	548, 844, 1219, 2188, 2308
Bme1390I	CCNGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
BmgT120I	GGNCC	5 cut(s)	477, 1897, 1898, 2108, 2109
BmiI	GGNNCC	5 cut(s)	1581, 1899, 2109, 2110, 2398
BmrFI	CCNGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
BmsI	GCATC	6 cut(s)	559, 571, 1157, 1333, 2017, 2173
BoxI	GACNNNNGTC	2 cut(s)	1483, 2044
BpiI	GAAGAC	3 cut(s)	73, 832, 2010
BpmI	CTGGAG	3 cut(s)	88, 204, 2422
Bpu10I	CCTNAGC	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	1193
Bsa29I	ATCGAT	1 cut(s)	2077
BsaBI	GATNNNNATC	2 cut(s)	150, 1277
BsaI	GGTCTC	1 cut(s)	2032
BsaJI	CCNNGG	7 cut(s)	351, 473, 661, 968, 1080, 1081, 1681
BsaXI	ACNNNNNCTCC	4 cut(s)	1621, 1651, 2395, 2425
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 208, 511
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	5 cut(s)	861, 908, 1624, 1993, 2000
Bse3DI	GCAATG	1 cut(s)	1924
Bse8I	GATNNNNATC	2 cut(s)	150, 1277
BseBI	CCWGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
BseCI	ATCGAT	1 cut(s)	2077
BseDI	CCNNGG	7 cut(s)	351, 473, 661, 968, 1080, 1081, 1681
BseGI	GGATG	8 cut(s)	138, 151, 394, 458, 562, 979, 1278, 1348
BseJI	GATNNNNATC	2 cut(s)	150, 1277
BseLI	CCNNNNNNNGG	3 cut(s)	165, 208, 511
BseMI	GCAATG	1 cut(s)	1924
BseMII	CTCAG	3 cut(s)	606, 752, 908
BseNI	ACTGG	5 cut(s)	861, 908, 1624, 1993, 2000
BseRI	GAGGAG	4 cut(s)	14, 207, 773, 846
BseSI	GKGCMC	2 cut(s)	1901, 2112
BseXI	GCAGC	4 cut(s)	854, 1204, 2173, 2318
BseYI	CCCAGC	1 cut(s)	2111
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	3 cut(s)	549, 1270, 1374
BshFI	GGCC	6 cut(s)	479, 546, 773, 907, 1899, 2110
BshVI	ATCGAT	1 cut(s)	2077
BsiHKAI	GWGCWC	2 cut(s)	496, 688
BsiSI	CCGG	2 cut(s)	770, 2035
BslI	CCNNNNNNNGG	3 cut(s)	165, 208, 511
BsmAI	GTCTC	5 cut(s)	206, 717, 741, 2032, 2267
BsmBI	CGTCTC	1 cut(s)	2267
BsmI	GAATGC	2 cut(s)	181, 820
BsnI	GGCC	6 cut(s)	479, 546, 773, 907, 1899, 2110
Bso31I	GGTCTC	1 cut(s)	2032
Bsp120I	GGGCCC	2 cut(s)	1897, 2108
Bsp1286I	GDGCHC	6 cut(s)	172, 496, 688, 1828, 1901, 2112
Bsp143I	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
Bsp19I	CCATGG	3 cut(s)	351, 968, 1681
BspACI	CCGC	6 cut(s)	159, 547, 1270, 1507, 1623, 2060
BspANI	GGCC	6 cut(s)	479, 546, 773, 907, 1899, 2110
BspCNI	CTCAG	3 cut(s)	607, 751, 909
BspDI	ATCGAT	1 cut(s)	2077
BspFNI	CGCG	3 cut(s)	549, 1270, 1374
BspHI	TCATGA	2 cut(s)	586, 2435
BspLI	GGNNCC	5 cut(s)	1581, 1899, 2109, 2110, 2398
BspMAI	CTGCAG	1 cut(s)	1222
BspMI	ACCTGC	1 cut(s)	1957
BspPI	GGATC	3 cut(s)	439, 1654, 1739
BspTI	CTTAAG	1 cut(s)	1937
BspTNI	GGTCTC	1 cut(s)	2032
BsrBI	CCGCTC	2 cut(s)	161, 1507
BsrDI	GCAATG	1 cut(s)	1924
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	5 cut(s)	861, 908, 1624, 1993, 2000
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	7 cut(s)	351, 473, 661, 968, 1080, 1081, 1681
BssMI	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	5 cut(s)	351, 473, 661, 968, 1681
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
Bst4CI	ACNGT	3 cut(s)	235, 1575, 1832
Bst6I	CTCTTC	4 cut(s)	131, 317, 741, 1549
BstAFI	CTTAAG	1 cut(s)	1937
BstC8I	GCNNGC	8 cut(s)	226, 765, 775, 797, 1097, 1676, 2172, 2244
BstDEI	CTNAG	6 cut(s)	453, 615, 698, 738, 917, 2378
BstDSI	CCRYGG	3 cut(s)	351, 968, 1681
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	8 cut(s)	138, 151, 394, 458, 562, 979, 1278, 1348
BstFNI	CGCG	3 cut(s)	549, 1270, 1374
BstHHI	GCGC	2 cut(s)	1680, 1982
BstKTI	GATC	9 cut(s)	280, 447, 592, 961, 1165, 1649, 1734, 1806, 2068
BstMAI	GTCTC	5 cut(s)	206, 717, 741, 2032, 2267
BstMBI	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
BstNI	CCWGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
BstNSI	RCATGY	2 cut(s)	799, 1678
BstPAI	GACNNNNGTC	2 cut(s)	1483, 2044
BstSCI	CCNGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
BstSFI	CTRYAG	4 cut(s)	1218, 1746, 1881, 2359
BstSLI	GKGCMC	2 cut(s)	1901, 2112
BstUI	CGCG	3 cut(s)	549, 1270, 1374
BstV1I	GCAGC	4 cut(s)	854, 1204, 2173, 2318
BstV2I	GAAGAC	3 cut(s)	73, 832, 2010
BstX2I	RGATCY	3 cut(s)	444, 1646, 2065
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	3 cut(s)	444, 1646, 2065
Bsu15I	ATCGAT	1 cut(s)	2077
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	6 cut(s)	479, 546, 773, 907, 1899, 2110
BsuTUI	ATCGAT	1 cut(s)	2077
BtgI	CCRYGG	3 cut(s)	351, 968, 1681
BtsCI	GGATG	8 cut(s)	138, 151, 394, 458, 562, 979, 1278, 1348
BtsI	GCAGTG	1 cut(s)	1639
BtsIMutI	CAGTG	2 cut(s)	1639, 2171
BveI	ACCTGC	1 cut(s)	1957
Cac8I	GCNNGC	8 cut(s)	226, 765, 775, 797, 1097, 1676, 2172, 2244
CaiI	CAGNNNCTG	3 cut(s)	1243, 1459, 1988
CciI	TCATGA	2 cut(s)	586, 2435
CfoI	GCGC	2 cut(s)	1680, 1982
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	5 cut(s)	477, 1897, 1898, 2108, 2109
ClaI	ATCGAT	1 cut(s)	2077
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	89
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	6 cut(s)	453, 615, 698, 738, 917, 2378
DpnI	GATC	9 cut(s)	279, 446, 591, 960, 1164, 1648, 1733, 1805, 2067
DpnII	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
DraIII	CACNNNGTG	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	544, 905
Eam1104I	CTCTTC	4 cut(s)	131, 317, 741, 1549
EarI	CTCTTC	4 cut(s)	131, 317, 741, 1549
Eco130I	CCWWGG	5 cut(s)	351, 473, 661, 968, 1681
Eco24I	GRGCYC	4 cut(s)	172, 1828, 1901, 2112
Eco31I	GGTCTC	1 cut(s)	2032
Eco32I	GATATC	1 cut(s)	368
Eco57I	CTGAAG	6 cut(s)	930, 1220, 1358, 2118, 2147, 2157
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoO109I	RGGNCCY	2 cut(s)	1898, 2108
EcoRI	GAATTC	1 cut(s)	468
EcoRII	CCWGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
EcoRV	GATATC	1 cut(s)	368
EcoT14I	CCWWGG	5 cut(s)	351, 473, 661, 968, 1681
EcoT38I	GRGCYC	4 cut(s)	172, 1828, 1901, 2112
ErhI	CCWWGG	5 cut(s)	351, 473, 661, 968, 1681
Esp3I	CGTCTC	1 cut(s)	2267
FalI	AAGNNNNNCTT	8 cut(s)	446, 478, 513, 545, 1249, 1281, 1720, 1752
FblI	GTMKAC	2 cut(s)	183, 1487
Fnu4HI	GCNGC	5 cut(s)	547, 843, 1218, 2187, 2307
FokI	GGATG	8 cut(s)	145, 158, 401, 445, 549, 986, 1285, 1355
FriOI	GRGCYC	4 cut(s)	172, 1828, 1901, 2112
Fsp4HI	GCNGC	5 cut(s)	547, 843, 1218, 2187, 2307
FspBI	CTAG	3 cut(s)	120, 791, 2297
FspI	TGCGCA	1 cut(s)	1981
GlaI	GCGC	2 cut(s)	1679, 1981
GluI	GCNGC	5 cut(s)	547, 843, 1218, 2187, 2307
GsaI	CCCAGC	1 cut(s)	2115
GsuI	CTGGAG	3 cut(s)	88, 204, 2422
HaeIII	GGCC	6 cut(s)	479, 546, 773, 907, 1899, 2110
HapII	CCGG	2 cut(s)	770, 2035
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	1680, 1982
Hin6I	GCGC	2 cut(s)	1678, 1980
HinP1I	GCGC	2 cut(s)	1678, 1980
HincII	GTYRAC	3 cut(s)	184, 1488, 1782
HindII	GTYRAC	3 cut(s)	184, 1488, 1782
HindIII	AAGCTT	5 cut(s)	401, 527, 1179, 1232, 2172
HpaI	GTTAAC	1 cut(s)	1782
HpaII	CCGG	2 cut(s)	770, 2035
HphI	GGTGA	5 cut(s)	19, 148, 241, 798, 1421
Hpy166II	GTNNAC	6 cut(s)	184, 854, 1488, 1782, 1835, 1934
Hpy188III	TCNNGA	8 cut(s)	105, 275, 509, 566, 587, 916, 1364, 2436
Hpy8I	GTNNAC	6 cut(s)	184, 854, 1488, 1782, 1835, 1934
HpyAV	CCTTC	9 cut(s)	335, 515, 704, 1282, 1333, 1722, 1936, 2376, 2408
HpyCH4III	ACNGT	3 cut(s)	235, 1575, 1832
HpyF3I	CTNAG	6 cut(s)	453, 615, 698, 738, 917, 2378
HspAI	GCGC	2 cut(s)	1678, 1980
KspAI	GTTAAC	1 cut(s)	1782
Kzo9I	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
LmnI	GCTCC	5 cut(s)	760, 833, 1453, 1585, 1629
Lsp1109I	GCAGC	4 cut(s)	854, 1204, 2173, 2318
LweI	GCATC	6 cut(s)	559, 571, 1157, 1333, 2017, 2173
MaeI	CTAG	3 cut(s)	120, 791, 2297
MaeIII	GTNAC	5 cut(s)	14, 98, 247, 254, 344
MalI	GATC	9 cut(s)	279, 446, 591, 960, 1164, 1648, 1733, 1805, 2067
MbiI	CCGCTC	2 cut(s)	161, 1507
MboI	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
MfeI	CAATTG	3 cut(s)	837, 1045, 2228
MflI	RGATCY	3 cut(s)	444, 1646, 2065
MhlI	GDGCHC	6 cut(s)	172, 496, 688, 1828, 1901, 2112
MmeI	TCCRAC	3 cut(s)	343, 1607, 2248
MroXI	GAANNNNTTC	2 cut(s)	1233, 1813
MslI	CAYNNNNRTG	2 cut(s)	567, 2434
MspA1I	CMGCKG	1 cut(s)	1565
MspCI	CTTAAG	1 cut(s)	1937
MspI	CCGG	2 cut(s)	770, 2035
MspR9I	CCNGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
MunI	CAATTG	3 cut(s)	837, 1045, 2228
Mva1269I	GAATGC	2 cut(s)	181, 820
MvaI	CCWGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
MvnI	CGCG	3 cut(s)	549, 1270, 1374
NcoI	CCATGG	3 cut(s)	351, 968, 1681
NdeII	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
NlaIV	GGNNCC	5 cut(s)	1581, 1899, 2109, 2110, 2398
NmeAIII	GCCGAG	2 cut(s)	310, 917
NmuCI	GTSAC	3 cut(s)	14, 98, 247
NsbI	TGCGCA	1 cut(s)	1981
NspI	RCATGY	2 cut(s)	799, 1678
PaeI	GCATGC	2 cut(s)	799, 1678
PagI	TCATGA	2 cut(s)	586, 2435
PasI	CCCWGGG	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 84
PctI	GAATGC	2 cut(s)	181, 820
PdmI	GAANNNNTTC	2 cut(s)	1233, 1813
PfeI	GAWTC	5 cut(s)	151, 1013, 1021, 1666, 1874
PflMI	CCANNNNNTGG	1 cut(s)	208
PfoI	TCCNGGA	2 cut(s)	128, 2399
PkrI	GCNGC	5 cut(s)	548, 844, 1219, 2188, 2308
PshAI	GACNNNNGTC	2 cut(s)	1483, 2044
PshBI	ATTAAT	1 cut(s)	1064
Psp6I	CCWGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
PspFI	CCCAGC	1 cut(s)	2111
PspGI	CCWGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
PspN4I	GGNNCC	5 cut(s)	1581, 1899, 2109, 2110, 2398
PspOMI	GGGCCC	2 cut(s)	1897, 2108
PspPI	GGNCC	5 cut(s)	477, 1897, 1898, 2108, 2109
PstI	CTGCAG	1 cut(s)	1222
PstNI	CAGNNNCTG	3 cut(s)	1243, 1459, 1988
PsuI	RGATCY	3 cut(s)	444, 1646, 2065
PvuII	CAGCTG	1 cut(s)	1565
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	2 cut(s)	567, 2434
SalI	GTCGAC	2 cut(s)	182, 1486
SatI	GCNGC	5 cut(s)	547, 843, 1218, 2187, 2307
Sau3AI	GATC	9 cut(s)	277, 444, 589, 958, 1162, 1646, 1731, 1803, 2065
Sau96I	GGNCC	5 cut(s)	477, 1897, 1898, 2108, 2109
ScrFI	CCNGG	6 cut(s)	130, 374, 481, 489, 1082, 2401
SduI	GDGCHC	6 cut(s)	172, 496, 688, 1828, 1901, 2112
SfaNI	GCATC	6 cut(s)	559, 571, 1157, 1333, 2017, 2173
SfcI	CTRYAG	4 cut(s)	1218, 1746, 1881, 2359
SmiMI	CAYNNNNRTG	2 cut(s)	567, 2434
SmlI	CTYRAG	2 cut(s)	1172, 1937
SmoI	CTYRAG	2 cut(s)	1172, 1937
SphI	GCATGC	2 cut(s)	799, 1678
SsiI	CCGC	6 cut(s)	159, 547, 1270, 1507, 1623, 2060
SspMI	CTAG	3 cut(s)	120, 791, 2297
StyD4I	CCNGG	6 cut(s)	128, 372, 479, 487, 1080, 2399
StyI	CCWWGG	5 cut(s)	351, 473, 661, 968, 1681
TaaI	ACNGT	3 cut(s)	235, 1575, 1832
TaqI	TCGA	7 cut(s)	55, 64, 183, 280, 1487, 1518, 2077
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	5 cut(s)	151, 1013, 1021, 1666, 1874
TscAI	CASTG	2 cut(s)	1639, 2171
TseFI	GTSAC	3 cut(s)	14, 98, 247
TseI	GCWGC	4 cut(s)	842, 1217, 2186, 2306
Tsp45I	GTSAC	3 cut(s)	14, 98, 247
TspDTI	ATGAA	8 cut(s)	149, 575, 1553, 1673, 1805, 1866, 1976, 2133
TspGWI	ACGGA	2 cut(s)	1880, 2224
TspRI	CASTG	2 cut(s)	1639, 2171
Van91I	CCANNNNNTGG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	1937
VspI	ATTAAT	1 cut(s)	1064
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	7 cut(s)	468, 1252, 1840, 2121, 2213, 2250, 2364
XceI	RCATGY	2 cut(s)	799, 1678
XmiI	GTMKAC	2 cut(s)	183, 1487
XmnI	GAANNNNTTC	2 cut(s)	1233, 1813
XspI	CTAG	3 cut(s)	120, 791, 2297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.