Rmu_co8347981.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8347981.1
OG0015029
Physical Location & Seq
Reverse (-)
111 .. 986
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8347981.1_g000001.1.cds

Sequence Viewer

Length: 876 bp
atgattgagtcgaacattaggcctgatgatatctgcttggtctctgctctctctgcttgttctcagctgggtgatttggagcgagggagaagtattcatgactacatcaaacaaaacaggattagactaagttcattctttttgacagcattggtggacctgtatgcgaaatgcgggtgcatcgagaccgccattaagattttcgagtcgagctgtgataagaatgtgttcacttggaatgccatgcttgttgggcttgcaatgcacggccacgcccatctctcactggagtacttctccagaatgatagaggctggagttaaacctgatggggttagcttcttaggggttttagtgggttgcagccatggaggtacagtagatgaagcccgaaagcttttcgatgaaatggaattagtttatggggtccccagagagctcaagcattatgggtgcatggctgatctgcttggtagagctgggttgatcaaggaagcaatggagatgatagagaagatgccaatggggggcgatgtgtttgtgtggggtggtttacttggaggttgcaaaatacatggtgatgttgagggtgcaaagaaagcagcagagcatgtgatggagttggaccctgaagatggtggtgtatattcaatcatggctagcgtttatgccaatgcagagaaatgggatgatgtggtaaaaaccagaaagtccataagttctaacaagagggtcaagaagaactctggttgtagtttgattaggttgaatggagtcacccatgagtttcttgcaggggatagcttccatcctcgaacagaagcaatatatttggtactggatggactttggaaacatcaatttgaatcatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

291

Amino Acids

32.09

Weight (kDa)

5.89

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61800
fragaria_vesca FvH4_5g09900
malus_domestica MD00G1076000.v1.1
prunus_persica Prupe.5G139600_v2.0.a1
pyrus_communis pycom06g11970
rosa_chinensis RchiOBHm_Chr7g0188381
rosa_laevigata RLG00000004697
rosa_multiflora Rmu_co8347981.1_g000001 Rmu_sc0000952.1_g000005
rosa_roxburghii Rroxscaffold_3G00266440
rosa_rugosa Rorug06G0490300
rosa_samantha Rh7AG095000 Rh7BG096500 Rh7CG097000 Rh7CG097100
rosa_wichuraiana Rw7G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 174, 189
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 3 cut(s) 293, 376, 837
AfiI CCNNNNNNNGG 2 cut(s) 527, 635
AgsI TTSAA 3 cut(s) 651, 769, 866
AluBI AGCT 7 cut(s) 67, 213, 339, 397, 439, 479, 804
AluI AGCT 7 cut(s) 67, 213, 339, 397, 439, 479, 804
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 46, 179
AoxI GGCC 2 cut(s) 20, 268
ApeKI GCWGC 2 cut(s) 363, 602
Asp700I GAANNNNTTC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 157, 427, 625
AsuHPI GGTGA 3 cut(s) 83, 590, 769
AsuNHI GCTAGC 1 cut(s) 659
AvaII GGWCC 3 cut(s) 157, 427, 625
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 375, 614
BccI CCATC 6 cut(s) 285, 323, 610, 629, 816, 836
BceAI ACGGC 1 cut(s) 283
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 46, 179
BfaI CTAG 2 cut(s) 660, 874
BisI GCNGC 2 cut(s) 364, 603
BlsI GCNGC 2 cut(s) 365, 604
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 3 cut(s) 157, 427, 625
BmgT120I GGNCC 3 cut(s) 157, 427, 625
BmiI GGNNCC 3 cut(s) 428, 429, 627
BmsI GCATC 2 cut(s) 189, 507
BmtI GCTAGC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 3 cut(s) 283, 308, 336
BpuEI CTTGAG 1 cut(s) 425
BsaI GGTCTC 2 cut(s) 46, 179
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 635
Bse1I ACTGG 2 cut(s) 291, 843
Bse3DI GCAATG 2 cut(s) 267, 504
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 694, 808, 847
BseLI CCNNNNNNNGG 2 cut(s) 527, 635
BseMI GCAATG 2 cut(s) 267, 504
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 291, 843
BseXI GCAGC 2 cut(s) 375, 614
BseYI CCCAGC 2 cut(s) 67, 479
BshFI GGCC 2 cut(s) 22, 270
BsiHKAI GWGCWC 1 cut(s) 441
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 2 cut(s) 527, 635
BsmAI GTCTC 2 cut(s) 46, 179
BsmFI GGGAC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 22, 270
Bso31I GGTCTC 2 cut(s) 46, 179
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 463, 486
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 2 cut(s) 174, 189
BspANI GGCC 2 cut(s) 22, 270
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 428, 429, 627
BspOI GCTAGC 1 cut(s) 663
BspTNI GGTCTC 2 cut(s) 46, 179
BsrDI GCAATG 2 cut(s) 267, 504
BsrI ACTGG 2 cut(s) 291, 843
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 2 cut(s) 463, 486
BssT1I CCWWGG 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 258, 661
BstDEI CTNAG 3 cut(s) 63, 128, 343
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 694, 808, 847
BstKTI GATC 2 cut(s) 466, 489
BstMAI GTCTC 2 cut(s) 46, 179
BstMBI GATC 2 cut(s) 463, 486
BstMWI GCNNNNNNNGC 4 cut(s) 53, 253, 262, 599
BstNSI RCATGY 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 375, 614
BsuRI GGCC 2 cut(s) 22, 270
BtgI CCRYGG 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 694, 808, 847
BtsIMutI CAGTG 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 258, 661
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 157, 427, 625
Csp6I GTAC 3 cut(s) 292, 375, 836
CviAII CATG 9 cut(s) 98, 244, 368, 457, 575, 611, 655, 782, 870
CviQI GTAC 3 cut(s) 292, 375, 836
DdeI CTNAG 3 cut(s) 63, 128, 343
DpnI GATC 2 cut(s) 465, 488
DpnII GATC 2 cut(s) 463, 486
EaeI YGGCCR 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 2 cut(s) 46, 179
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 3 cut(s) 157, 427, 625
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 427
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 9 cut(s) 101, 247, 371, 460, 578, 614, 658, 785, 873
FaqI GGGAC 1 cut(s) 413
FatI CATG 9 cut(s) 97, 243, 367, 456, 574, 610, 654, 781, 869
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 364, 603
FokI GGATG 3 cut(s) 701, 795, 854
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 2 cut(s) 364, 603
FspBI CTAG 2 cut(s) 660, 874
GluI GCNGC 2 cut(s) 364, 603
GsaI CCCAGC 2 cut(s) 71, 483
GsuI CTGGAG 3 cut(s) 283, 308, 336
HaeIII GGCC 2 cut(s) 22, 270
Hin1II CATG 9 cut(s) 101, 247, 371, 460, 578, 614, 658, 785, 873
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 8, 206, 774, 866
HphI GGTGA 3 cut(s) 83, 590, 769
Hpy166II GTNNAC 3 cut(s) 157, 231, 554
Hpy188III TCNNGA 4 cut(s) 98, 184, 300, 736
Hpy8I GTNNAC 3 cut(s) 157, 231, 554
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 9 cut(s) 180, 260, 265, 363, 456, 567, 593, 677, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 253, 262, 599
HpyF3I CTNAG 3 cut(s) 63, 128, 343
Hsp92II CATG 9 cut(s) 101, 247, 371, 460, 578, 614, 658, 785, 873
KflI GGGWCCC 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 2 cut(s) 463, 486
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 2 cut(s) 375, 614
LweI GCATC 2 cut(s) 189, 507
MaeI CTAG 2 cut(s) 660, 874
MaeIII GTNAC 1 cut(s) 775
MalI GATC 2 cut(s) 465, 488
MboI GATC 2 cut(s) 463, 486
MboII GAAGA 3 cut(s) 526, 644, 751
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 2 cut(s) 413, 860
MlyI GAGTC 3 cut(s) 17, 215, 783
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 7 cut(s) 77, 304, 365, 554, 580, 723, 822
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 195, 321
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 53, 253, 262, 599
NcoI CCATGG 1 cut(s) 367
NdeII GATC 2 cut(s) 463, 486
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 9 cut(s) 101, 247, 371, 460, 578, 614, 658, 785, 873
NlaIV GGNNCC 3 cut(s) 428, 429, 627
NmuCI GTSAC 1 cut(s) 775
NspI RCATGY 1 cut(s) 614
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 22
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 866
PkrI GCNGC 2 cut(s) 365, 604
PleI GAGTC 3 cut(s) 16, 214, 782
PpsI GAGTC 3 cut(s) 16, 214, 782
PpuMI RGGWCCY 1 cut(s) 427
Psp124BI GAGCTC 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 427
PspFI CCCAGC 2 cut(s) 67, 479
PspN4I GGNNCC 3 cut(s) 428, 429, 627
PspPI GGNCC 3 cut(s) 157, 427, 625
PspPPI RGGWCCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 67
RsaI GTAC 3 cut(s) 293, 376, 837
RsaNI GTAC 3 cut(s) 292, 375, 836
RseI CAYNNNNRTG 1 cut(s) 579
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 195, 321
SatI GCNGC 2 cut(s) 364, 603
Sau3AI GATC 2 cut(s) 463, 486
Sau96I GGNCC 3 cut(s) 157, 427, 625
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 3 cut(s) 17, 215, 783
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 189, 507
SinI GGWCC 3 cut(s) 157, 427, 625
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 2 cut(s) 413, 860
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 2 cut(s) 174, 189
SspMI CTAG 2 cut(s) 660, 874
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 22
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 379
TaqI TCGA 6 cut(s) 11, 183, 204, 209, 402, 814
TasI AATT 2 cut(s) 413, 860
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 2 cut(s) 195, 321
Tru9I TTAA 2 cut(s) 195, 321
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 2 cut(s) 363, 602
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 4 cut(s) 86, 123, 399, 420
TspRI CASTG 1 cut(s) 291
VpaK11BI GGWCC 3 cut(s) 157, 427, 625
XceI RCATGY 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 660, 874
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.