Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000952.1

Orthogroup ID

OG0015029

Physical Location & Seq

Genomic Coordinates Forward (+)

18616 .. 19362

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000952.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgatctccaatctcatcaccctaatcaaacactgcaaaacccccatacaactcctccaactccatgctcataccatcaccaatggcactctcactataccccatcacaaaatcctacccaacctcctccacaccttcatctctctaatcaaaccctcttcctctgcaccttgtaccaccacctcactcagctatgccgtctctctcttcaatctcatcccaaacccatctactttctgcttcaacaacatcatcagagctcacaccctcctctcctctcccctccctgccctccatctcttcgcttccatgcgccgcttttcgctccccccagacttccacaccttccctttcgccctcaaggcctgcgcccagcttggctcttcttcattttcaatcacccagacccttcattctcaagccctcaagttcggtttcgcttcccactcgtttgtcaccaacaccctcattcatgtctactcagcttgccaccatctggaccatgcacgcaaggtgttcgacgaaagttcccacagggatgtggtctcgtataatgcgatgcttgacgcttttgttaagggaggtgatatttgtagagcacggcaagtgtttgatgagatggcagaccgggactctgtttcgtgggggactattttagctgggtacgcacagacgaatcggtgcgaggaagcgattgagctgtttggtgagatgattgagtcgaacattaggcctgatgatatctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

249

Amino Acids

27.68

Weight (kDa)

7.26

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61800
fragaria_vesca	FvH4_5g09900
malus_domestica	MD00G1076000.v1.1
prunus_persica	Prupe.5G139600_v2.0.a1
pyrus_communis	pycom06g11970
rosa_chinensis	RchiOBHm_Chr7g0188381
rosa_laevigata	RLG00000004697
rosa_multiflora	Rmu_co8347981.1_g000001 Rmu_sc0000952.1_g000005
rosa_roxburghii	Rroxscaffold_3G00266440
rosa_rugosa	Rorug06G0490300
rosa_samantha	Rh7AG095000 Rh7BG096500 Rh7CG097000 Rh7CG097100
rosa_wichuraiana	Rw7G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	175, 665
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	211, 244, 396
AluBI	AGCT	6 cut(s)	192, 260, 376, 485, 659, 700
AluI	AGCT	6 cut(s)	192, 260, 376, 485, 659, 700
Alw21I	GWGCWC	2 cut(s)	262, 601
Alw26I	GTCTC	2 cut(s)	205, 550
AoxI	GGCC	2 cut(s)	363, 731
AspLEI	GCGC	2 cut(s)	315, 371
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	6 cut(s)	10, 70, 391, 448, 596, 719
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	2 cut(s)	262, 601
BccI	CCATC	6 cut(s)	83, 111, 235, 303, 501, 613
BceAI	ACGGC	2 cut(s)	182, 617
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	2 cut(s)	205, 550
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	549
BpuEI	CTTGAG	3 cut(s)	344, 402, 410
BpuMI	CCSGG	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	216, 544
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	202, 495
BseRI	GAGGAG	4 cut(s)	44, 116, 260, 265
BseYI	CCCAGC	2 cut(s)	372, 659
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	365, 733
BsiHKAI	GWGCWC	2 cut(s)	262, 601
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	2 cut(s)	644, 661
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	205, 550
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	644, 661
BsnI	GGCC	2 cut(s)	365, 733
Bso31I	GGTCTC	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	262, 601
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	365, 733
BspCNI	CTCAG	2 cut(s)	201, 494
BspQI	GCTCTTC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	550
BssMI	GATC	1 cut(s)	3
Bst6I	CTCTTC	4 cut(s)	163, 212, 305, 388
BstC8I	GCNNGC	3 cut(s)	367, 487, 508
BstDEI	CTNAG	2 cut(s)	188, 481
BstF5I	GGATG	2 cut(s)	216, 544
BstHHI	GCGC	2 cut(s)	315, 371
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	205, 550
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 665
BstSCI	CCNGG	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	365, 733
BtgZI	GCGATG	1 cut(s)	572
BtsCI	GGATG	2 cut(s)	216, 544
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	367, 487, 508
CfoI	GCGC	2 cut(s)	315, 371
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	174, 664
CviAII	CATG	4 cut(s)	65, 310, 473, 503
CviQI	GTAC	2 cut(s)	174, 664
DdeI	CTNAG	2 cut(s)	188, 481
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	163, 212, 305, 388
EarI	CTCTTC	4 cut(s)	163, 212, 305, 388
Ecl136II	GAGCTC	1 cut(s)	260
Eco147I	AGGCCT	2 cut(s)	365, 733
Eco24I	GRGCYC	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	550
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	742
EcoT38I	GRGCYC	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	4 cut(s)	68, 313, 476, 506
FaiI	YATR	9 cut(s)	47, 66, 72, 98, 195, 311, 474, 504, 552
FaqI	GGGAC	2 cut(s)	644, 661
FatI	CATG	4 cut(s)	64, 309, 472, 502
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	2 cut(s)	203, 551
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	316
GlaI	GCGC	2 cut(s)	314, 370
GluI	GCNGC	1 cut(s)	316
GsaI	CCCAGC	2 cut(s)	376, 663
HaeIII	GGCC	2 cut(s)	365, 733
HapII	CCGG	1 cut(s)	628
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	2 cut(s)	315, 371
Hin1II	CATG	4 cut(s)	68, 313, 476, 506
Hin6I	GCGC	2 cut(s)	313, 369
HinP1I	GCGC	2 cut(s)	313, 369
HinfI	GANTC	3 cut(s)	632, 676, 719
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	6 cut(s)	10, 70, 391, 448, 596, 719
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	3 cut(s)	145, 355, 419
HpyCH4V	TGCA	3 cut(s)	36, 167, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 665
HpyF3I	CTNAG	2 cut(s)	188, 481
Hsp92II	CATG	4 cut(s)	68, 313, 476, 506
HspAI	GCGC	2 cut(s)	313, 369
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	9 cut(s)	300, 345, 379, 386, 416, 482, 520, 641, 645
LweI	GCATC	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	150, 199, 292, 375, 378
MhlI	GDGCHC	2 cut(s)	262, 601
MlyI	GAGTC	2 cut(s)	626, 728
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	1 cut(s)	628
MspR9I	CCNGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	2 cut(s)	362, 665
NciI	CCSGG	1 cut(s)	629
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	68, 313, 476, 506
NmuCI	GTSAC	1 cut(s)	454
PceI	AGGCCT	2 cut(s)	365, 733
PciSI	GCTCTTC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	676
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	2 cut(s)	626, 727
PpsI	GAGTC	2 cut(s)	626, 727
Psp124BI	GAGCTC	1 cut(s)	262
PspFI	CCCAGC	2 cut(s)	372, 659
PspPI	GGNCC	1 cut(s)	499
RsaI	GTAC	2 cut(s)	175, 665
RsaNI	GTAC	2 cut(s)	174, 664
RseI	CAYNNNNRTG	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	2 cut(s)	626, 728
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	262, 601
SfaNI	GCATC	1 cut(s)	549
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	3 cut(s)	359, 417, 425
SmoI	CTYRAG	3 cut(s)	359, 417, 425
SseBI	AGGCCT	2 cut(s)	365, 733
SsiI	CCGC	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	262
StuI	AGGCCT	2 cut(s)	365, 733
StyD4I	CCNGG	1 cut(s)	627
TaqI	TCGA	2 cut(s)	519, 722
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	676
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	127, 378, 401, 461
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.