Rh7CG097100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015029
Physical Location & Seq
Reverse (-)
7332064 .. 7333650
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG097100.1

Sequence Viewer

Length: 1587 bp
ATGATCTCCAATCTCATCACCCTAATCAAACACTGCAAAACCCCCAAACAACTCCTCCAACTCCATGCTCATACCATCACCAATGCCACTCTCACTATACCCCATCACAAAATCCTACCCAACCTCCTCCACAGCTTCATCTCCCTAATCAAACCCTCTTCCTCTGCACCTTCTACCACCACCTCACTCAGCTATGCCGTCTCCCTCTTCAATCTCATCCCAAACCCATCTACTTTCTGCTTCAACAACATCATCAGAGCTCACACCCTCCTCTCCTCTCCCCTCCCTGCCCTCCATCTCTTCGCTTCCATGCGCCGCTTTTCGCTCCCCCCAGACTTCCACACCTTCCCTTTCGCCCTCAAGGCCTGCGCCCAGCTTGGCTCTTCCTCGTTTTCACTCTCCCAGACCCTTCATTCTCAAGCCCTCAAGTTCGGTTTCGCTTCCCACTCGTTTCTCACCAACACCCTCATTCATGTCTACTCAGCTTGCCAGCATCTGGACCATGCACGCAAGGTGTTCGACGAAAGCTCCCACAGGGATGTGGTCTCGTATAATGCGATGCTTGACGCTTTTGTTAAGGGAGGTGACATTTGTAGAGCACGGCAAGTGTTTGATGAGATGGCAGACCGGGACTCTGTTTCGTGGGGGACTATTTTAGCTGGGTATGCACAGACGAATCGGTGCGAGGAAGCGATTGAGCTGTTTGGTGAGATGATTGAGTCCAACATTAGGCCTGATGATATCTGCTTGGTCTCTGCTCTCTCTGCTTGTTCTCAGCTGGGTGATTTGGAGCGAGGGAGAAGTATTCATGACTACATCAAACAAAACAGGATTAGACTAAGTTCATTCTTTTTGACAGCATTGGTGGACTTGTATGCGAAATGCGGGTGCATCGAGACTGCCATTAAGATTTTCGAGTCGAGCTATGATAAGAATGTGTTCACTTGGAATGCCATGCTTGTTGGGCTTGCAATGCACGGCCACGCCCATCTCTCACTGGAGTACTTCTCCAGAATGATAGAGGCTGGAGTTAAACCTGATGGGGTTACCTTCTTAGGGGTTTTAGTGGGTTGCAGCCATGGAGGTAGAGTAGATGAAGCCCGAAAGCTTTTCGATGAAATGGAATTAGTTTATGGGGTCCCCAGAGAGCTCAAGCATTATGGGTGCATGGCCGATCTGCTTGGTAGAGCTGGGTTGATCAAGGAAGCAATGGAGATGATAGAGAAGATGCCAATGGGGGGCGATGTGTTCGTGTGGGGTGGTTTACTTGGAGGTTGCAAAATACATGGTGATGTTGAGGGTGCAAAGAAAGCAGCAGAGCATGTGATGGAGTTGGACCCTGAAGATGGTGGTGTATATTCCATCATGGCTAGCGTTTATGCCAATGCAGAGAAATGGGATGATGTGGTAAAAACCAGAAAGTCCATAAGTTCTAACAAGAGGGTCAAGAAGAACTCTGGTTGTAGTTTGATTAGGTTGAATGGAGTCACCCATGAGTTTCTTGCAGGGGATAGCTTCCATCCTCGAACAGAAGCAATATATTTGGTACTGGATGGACTTTGGAAACATCAATTTGAATCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

528

Amino Acids

58.48

Weight (kDa)

6.81

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 211 - 257 3.7e-08 PPR repeat family
PPR PF01535 213 - 243 8.3e-07 PPR repeat
PPR_2 PF13041 311 - 359 6.9e-07 PPR repeat family
E_motif PF20431 429 - 491 6.5e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61800
fragaria_vesca FvH4_5g09900
malus_domestica MD00G1076000.v1.1
prunus_persica Prupe.5G139600_v2.0.a1
pyrus_communis pycom06g11970
rosa_chinensis RchiOBHm_Chr7g0188381
rosa_laevigata RLG00000004697
rosa_multiflora Rmu_co8347981.1_g000001 Rmu_sc0000952.1_g000005
rosa_roxburghii Rroxscaffold_3G00266440
rosa_rugosa Rorug06G0490300
rosa_samantha Rh7AG095000 Rh7BG096500 Rh7CG097000 Rh7CG097100
rosa_wichuraiana Rw7G008190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 496
AccI GTMKAC 1 cut(s) 477
AciI CCGC 2 cut(s) 316, 885
AcoI YGGCCR 2 cut(s) 979, 1170
AcuI CTGAAG 1 cut(s) 1362
AfaI GTAC 2 cut(s) 1004, 1548
AfiI CCNNNNNNNGG 5 cut(s) 496, 729, 1056, 1238, 1346
AgsI TTSAA 4 cut(s) 211, 244, 1480, 1577
Alw21I GWGCWC 3 cut(s) 262, 601, 1152
Alw26I GTCTC 4 cut(s) 205, 550, 757, 890
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 4 cut(s) 363, 731, 979, 1170
ApeKI GCWGC 2 cut(s) 1074, 1313
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 2 cut(s) 315, 371
AspS9I GGNCC 3 cut(s) 499, 1138, 1336
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 8 cut(s) 10, 70, 448, 596, 719, 794, 1301, 1480
AsuNHI GCTAGC 1 cut(s) 1370
AvaII GGWCC 3 cut(s) 499, 1138, 1336
BanII GRGCYC 2 cut(s) 262, 1152
Bbv12I GWGCWC 3 cut(s) 262, 601, 1152
BbvI GCAGC 2 cut(s) 1086, 1325
BceAI ACGGC 3 cut(s) 182, 617, 994
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BclI TGATCA 1 cut(s) 1197
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 4 cut(s) 205, 550, 757, 890
BfaI CTAG 2 cut(s) 1371, 1585
BglI GCCNNNNNGGC 1 cut(s) 362
BisI GCNGC 3 cut(s) 316, 1075, 1314
BlsI GCNGC 3 cut(s) 317, 1076, 1315
BmcAI AGTACT 1 cut(s) 1004
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 3 cut(s) 499, 1138, 1336
BmgT120I GGNCC 3 cut(s) 499, 1138, 1336
BmiI GGNNCC 3 cut(s) 1139, 1140, 1338
BmrFI CCNGG 1 cut(s) 629
BmsI GCATC 4 cut(s) 502, 549, 900, 1218
BmtI GCTAGC 1 cut(s) 1374
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpmI CTGGAG 3 cut(s) 994, 1019, 1047
BpuEI CTTGAG 4 cut(s) 344, 402, 410, 1136
BpuMI CCSGG 1 cut(s) 629
BsaI GGTCTC 2 cut(s) 550, 757
BsaJI CCNNGG 1 cut(s) 1078
BsaXI ACNNNNNCTCC 8 cut(s) 39, 69, 108, 138, 512, 542, 1074, 1104
Bsc4I CCNNNNNNNGG 5 cut(s) 496, 729, 1056, 1238, 1346
Bse1I ACTGG 2 cut(s) 1002, 1554
Bse3DI GCAATG 2 cut(s) 978, 1215
BseDI CCNNGG 1 cut(s) 1078
BseGI GGATG 5 cut(s) 216, 544, 1405, 1519, 1558
BseLI CCNNNNNNNGG 5 cut(s) 496, 729, 1056, 1238, 1346
BseMI GCAATG 2 cut(s) 978, 1215
BseMII CTCAG 3 cut(s) 202, 495, 788
BseNI ACTGG 2 cut(s) 1002, 1554
BseRI GAGGAG 4 cut(s) 44, 116, 260, 265
BseXI GCAGC 2 cut(s) 1086, 1325
BseYI CCCAGC 4 cut(s) 372, 659, 778, 1190
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 4 cut(s) 365, 733, 981, 1172
BsiHKAI GWGCWC 3 cut(s) 262, 601, 1152
BsiSI CCGG 1 cut(s) 628
BslFI GGGAC 3 cut(s) 644, 661, 1124
BslI CCNNNNNNNGG 5 cut(s) 496, 729, 1056, 1238, 1346
BsmAI GTCTC 4 cut(s) 205, 550, 757, 890
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 3 cut(s) 644, 661, 1124
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 4 cut(s) 365, 733, 981, 1172
Bso31I GGTCTC 2 cut(s) 550, 757
Bsp1286I GDGCHC 3 cut(s) 262, 601, 1152
Bsp143I GATC 3 cut(s) 3, 1174, 1197
Bsp19I CCATGG 1 cut(s) 1078
BspACI CCGC 2 cut(s) 316, 885
BspANI GGCC 4 cut(s) 365, 733, 981, 1172
BspCNI CTCAG 3 cut(s) 201, 494, 787
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 1139, 1140, 1338
BspOI GCTAGC 1 cut(s) 1374
BspQI GCTCTTC 1 cut(s) 388
BspTNI GGTCTC 2 cut(s) 550, 757
BsrDI GCAATG 2 cut(s) 978, 1215
BsrI ACTGG 2 cut(s) 1002, 1554
BssECI CCNNGG 1 cut(s) 1078
BssMI GATC 3 cut(s) 3, 1174, 1197
BssT1I CCWWGG 1 cut(s) 1078
Bst6I CTCTTC 4 cut(s) 163, 212, 305, 388
BstC8I GCNNGC 6 cut(s) 367, 487, 491, 508, 969, 1372
BstDEI CTNAG 5 cut(s) 188, 481, 774, 839, 1054
BstDSI CCRYGG 1 cut(s) 1078
BstEII GGTNACC 1 cut(s) 1045
BstF5I GGATG 5 cut(s) 216, 544, 1405, 1519, 1558
BstHHI GCGC 2 cut(s) 315, 371
BstKTI GATC 3 cut(s) 6, 1177, 1200
BstMAI GTCTC 4 cut(s) 205, 550, 757, 890
BstMBI GATC 3 cut(s) 3, 1174, 1197
BstMWI GCNNNNNNNGC 6 cut(s) 362, 665, 764, 964, 973, 1310
BstNSI RCATGY 1 cut(s) 1325
BstPI GGTNACC 1 cut(s) 1045
BstSCI CCNGG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 1086, 1325
BsuRI GGCC 4 cut(s) 365, 733, 981, 1172
BtgI CCRYGG 1 cut(s) 1078
BtgZI GCGATG 2 cut(s) 572, 1257
BtsCI GGATG 5 cut(s) 216, 544, 1405, 1519, 1558
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 995
Cac8I GCNNGC 6 cut(s) 367, 487, 491, 508, 969, 1372
CaiI CAGNNNCTG 1 cut(s) 496
CciI TCATGA 1 cut(s) 808
CfoI GCGC 2 cut(s) 315, 371
Cfr13I GGNCC 3 cut(s) 499, 1138, 1336
CseI GACGC 1 cut(s) 575
Csp6I GTAC 2 cut(s) 1003, 1547
CviQI GTAC 2 cut(s) 1003, 1547
DdeI CTNAG 5 cut(s) 188, 481, 774, 839, 1054
DpnI GATC 3 cut(s) 5, 1176, 1199
DpnII GATC 3 cut(s) 3, 1174, 1197
EaeI YGGCCR 2 cut(s) 979, 1170
Eam1104I CTCTTC 4 cut(s) 163, 212, 305, 388
EarI CTCTTC 4 cut(s) 163, 212, 305, 388
Ecl136II GAGCTC 2 cut(s) 260, 1150
Eco130I CCWWGG 1 cut(s) 1078
Eco147I AGGCCT 2 cut(s) 365, 733
Eco24I GRGCYC 2 cut(s) 262, 1152
Eco31I GGTCTC 2 cut(s) 550, 757
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 3 cut(s) 499, 1138, 1336
Eco53kI GAGCTC 2 cut(s) 260, 1150
Eco57I CTGAAG 1 cut(s) 1362
Eco91I GGTNACC 1 cut(s) 1045
EcoICRI GAGCTC 2 cut(s) 260, 1150
EcoO109I RGGNCCY 1 cut(s) 1138
EcoO65I GGTNACC 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 1078
EcoT38I GRGCYC 2 cut(s) 262, 1152
ErhI CCWWGG 1 cut(s) 1078
Esp3I CGTCTC 1 cut(s) 205
FaqI GGGAC 3 cut(s) 644, 661, 1124
FauI CCCGC 1 cut(s) 878
FbaI TGATCA 1 cut(s) 1197
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 316, 1075, 1314
FokI GGATG 5 cut(s) 203, 551, 1412, 1506, 1565
FriOI GRGCYC 2 cut(s) 262, 1152
Fsp4HI GCNGC 3 cut(s) 316, 1075, 1314
FspBI CTAG 2 cut(s) 1371, 1585
GlaI GCGC 2 cut(s) 314, 370
GluI GCNGC 3 cut(s) 316, 1075, 1314
GsaI CCCAGC 4 cut(s) 376, 663, 782, 1194
GsuI CTGGAG 3 cut(s) 994, 1019, 1047
HaeIII GGCC 4 cut(s) 365, 733, 981, 1172
HapII CCGG 1 cut(s) 628
HgaI GACGC 1 cut(s) 575
HhaI GCGC 2 cut(s) 315, 371
Hin6I GCGC 2 cut(s) 313, 369
HinP1I GCGC 2 cut(s) 313, 369
HindIII AAGCTT 1 cut(s) 1106
HinfI GANTC 6 cut(s) 632, 676, 719, 917, 1485, 1577
HpaII CCGG 1 cut(s) 628
HphI GGTGA 8 cut(s) 10, 70, 448, 596, 719, 794, 1301, 1480
Hpy166II GTNNAC 4 cut(s) 478, 868, 942, 1265
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 5 cut(s) 497, 809, 895, 1011, 1447
Hpy8I GTNNAC 4 cut(s) 478, 868, 942, 1265
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 4 cut(s) 180, 355, 419, 1060
HpyF10VI GCNNNNNNNGC 6 cut(s) 362, 665, 764, 964, 973, 1310
HpyF3I CTNAG 5 cut(s) 188, 481, 774, 839, 1054
HspAI GCGC 2 cut(s) 313, 369
KflI GGGWCCC 1 cut(s) 1138
Ksp22I TGATCA 1 cut(s) 1197
Kzo9I GATC 3 cut(s) 3, 1174, 1197
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 3 cut(s) 330, 533, 790
Lsp1109I GCAGC 2 cut(s) 1086, 1325
LweI GCATC 4 cut(s) 502, 549, 900, 1218
MaeI CTAG 2 cut(s) 1371, 1585
MaeIII GTNAC 3 cut(s) 584, 1045, 1486
MalI GATC 3 cut(s) 5, 1176, 1199
MboI GATC 3 cut(s) 3, 1174, 1197
MboII GAAGA 7 cut(s) 150, 199, 292, 375, 1237, 1355, 1462
MhlI GDGCHC 3 cut(s) 262, 601, 1152
MluCI AATT 2 cut(s) 1124, 1571
MlyI GAGTC 4 cut(s) 626, 728, 926, 1494
MmeI TCCRAC 3 cut(s) 82, 747, 1314
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 3 cut(s) 576, 906, 1032
MslI CAYNNNNRTG 2 cut(s) 537, 1290
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 1 cut(s) 628
MspR9I CCNGG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 955
MwoI GCNNNNNNNGC 6 cut(s) 362, 665, 764, 964, 973, 1310
NciI CCSGG 1 cut(s) 629
NcoI CCATGG 1 cut(s) 1078
NdeII GATC 3 cut(s) 3, 1174, 1197
NheI GCTAGC 1 cut(s) 1370
NlaIV GGNNCC 3 cut(s) 1139, 1140, 1338
NmuCI GTSAC 2 cut(s) 584, 1486
NspI RCATGY 1 cut(s) 1325
PagI TCATGA 1 cut(s) 808
PceI AGGCCT 2 cut(s) 365, 733
PciSI GCTCTTC 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PctI GAATGC 1 cut(s) 955
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 2 cut(s) 676, 1577
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 3 cut(s) 317, 1076, 1315
PleI GAGTC 4 cut(s) 626, 727, 925, 1493
PpsI GAGTC 4 cut(s) 626, 727, 925, 1493
PpuMI RGGWCCY 1 cut(s) 1138
Psp124BI GAGCTC 2 cut(s) 262, 1152
Psp5II RGGWCCY 1 cut(s) 1138
PspEI GGTNACC 1 cut(s) 1045
PspFI CCCAGC 4 cut(s) 372, 659, 778, 1190
PspN4I GGNNCC 3 cut(s) 1139, 1140, 1338
PspPI GGNCC 3 cut(s) 499, 1138, 1336
PspPPI RGGWCCY 1 cut(s) 1138
PstNI CAGNNNCTG 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 2 cut(s) 1004, 1548
RsaNI GTAC 2 cut(s) 1003, 1547
RseI CAYNNNNRTG 2 cut(s) 537, 1290
SacI GAGCTC 2 cut(s) 262, 1152
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 576, 906, 1032
SatI GCNGC 3 cut(s) 316, 1075, 1314
Sau3AI GATC 3 cut(s) 3, 1174, 1197
Sau96I GGNCC 3 cut(s) 499, 1138, 1336
ScaI AGTACT 1 cut(s) 1004
SchI GAGTC 4 cut(s) 626, 728, 926, 1494
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 3 cut(s) 262, 601, 1152
SfaNI GCATC 4 cut(s) 502, 549, 900, 1218
SinI GGWCC 3 cut(s) 499, 1138, 1336
SmiMI CAYNNNNRTG 2 cut(s) 537, 1290
SmlI CTYRAG 4 cut(s) 359, 417, 425, 1151
SmoI CTYRAG 4 cut(s) 359, 417, 425, 1151
Sse9I AATT 2 cut(s) 1124, 1571
SseBI AGGCCT 2 cut(s) 365, 733
SsiI CCGC 2 cut(s) 316, 885
SspMI CTAG 2 cut(s) 1371, 1585
SstI GAGCTC 2 cut(s) 262, 1152
StuI AGGCCT 2 cut(s) 365, 733
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 1 cut(s) 1078
TaqI TCGA 6 cut(s) 519, 894, 915, 920, 1113, 1525
TasI AATT 2 cut(s) 1124, 1571
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 2 cut(s) 676, 1577
Tru1I TTAA 3 cut(s) 576, 906, 1032
Tru9I TTAA 3 cut(s) 576, 906, 1032
TscAI CASTG 2 cut(s) 38, 1002
TseFI GTSAC 2 cut(s) 584, 1486
TseI GCWGC 2 cut(s) 1074, 1313
Tsp45I GTSAC 2 cut(s) 584, 1486
TspDTI ATGAA 7 cut(s) 127, 401, 461, 797, 834, 1110, 1131
TspRI CASTG 2 cut(s) 38, 1002
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 3 cut(s) 499, 1138, 1336
XceI RCATGY 1 cut(s) 1325
XmiI GTMKAC 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 2 cut(s) 1371, 1585
ZrmI AGTACT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.