Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367015.1

Orthogroup ID

OG0010789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 849

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

attggccagctctccaccgtgccaccaaagcaaaggaccccggaagccctagctaaagctgtggaattcatgaacagtcttgatgaagcagcttttaacggaggcttcatccttgagaagatcataggccccgtttccgcaggccatttggagctccagaccctaaacccgaacgacaacccctctgtcaccttcaactatttccaagaccccctagacttggagagatgtgtccaaggccttcataccatagagaaggtggttgaatcaaaggcattctccaaattccggttcaacgatatgtcaataccaactctcctcaacatgacagcccgagcccccatcaatttgctgcctaagcatgagaattcttcaaggtctctggagcagttctgtaaggacactgtgatgaccatttggcattaccatggaggatgccaagttgggagagttgttgatcatcaatacaaggttcttggtgttgatgctcttagggttattgatggctccacttttaactactcacctgggactaatcctcaagccactgttatgatgcttggaaggtacatgggacagacaatactgaatgagagacttgcgactgatgaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

205

Amino Acids

22.82

Weight (kDa)

5.86

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12570
fragaria_vesca	FvH4_5g01380
malus_domestica	MD04G1069000.v1.1
prunus_persica	Prupe.5G089100_v2.0.a1
pyrus_communis	pycom04g06280
rosa_chinensis	RchiOBHm_Chr7g0199501
rosa_laevigata	RLG00000003788
rosa_multiflora	Rmu_co8367015.1_g000001 Rmu_sc0003549.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256670
rosa_rugosa	Rorug07G0049400 Rorug07G0055000 Rorug07G0055100 Rorug07G0055200
rosa_samantha	Rh7AG179700 Rh7BG176500 Rh7BG183000 Rh7CG188500 Rh7DG182400
rosa_wichuraiana	Rw7G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	4
AcsI	RAATTY	3 cut(s)	65, 284, 367
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	220, 288
AgsI	TTSAA	4 cut(s)	196, 266, 295, 375
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	5 cut(s)	10, 53, 59, 92, 154
AluI	AGCT	5 cut(s)	10, 53, 59, 92, 154
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	384, 589
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	4 cut(s)	4, 127, 142, 238
ApeKI	GCWGC	2 cut(s)	89, 352
ApoI	RAATTY	3 cut(s)	65, 284, 367
AspS9I	GGNCC	2 cut(s)	36, 128
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	181, 516
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	156, 340
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	101, 339
BccI	CCATC	2 cut(s)	350, 497
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	384, 589
BfaI	CTAG	2 cut(s)	50, 215
BisI	GCNGC	2 cut(s)	90, 353
BlsI	GCNGC	2 cut(s)	91, 354
Bme1390I	CCNGG	2 cut(s)	41, 528
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	36, 128
BmiI	GGNNCC	3 cut(s)	38, 130, 508
BmrFI	CCNGG	2 cut(s)	41, 528
BmsI	GCATC	3 cut(s)	425, 475, 546
BpmI	CTGGAG	2 cut(s)	140, 404
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	134, 525
BpuMI	CCSGG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	39, 235, 427, 527
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 288
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	39, 235, 427, 527
BseGI	GGATG	2 cut(s)	108, 440
BseLI	CCNNNNNNNGG	2 cut(s)	220, 288
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	101, 339
BshFI	GGCC	4 cut(s)	6, 129, 144, 240
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	41, 289
BslFI	GGGAC	2 cut(s)	544, 588
BslI	CCNNNNNNNGG	2 cut(s)	220, 288
BsmAI	GTCTC	2 cut(s)	384, 589
BsmFI	GGGAC	2 cut(s)	544, 588
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	6, 129, 144, 240
Bso31I	GGTCTC	1 cut(s)	384
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	156, 340
Bsp143I	GATC	2 cut(s)	120, 457
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	4 cut(s)	6, 129, 144, 240
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	38, 130, 508
BspTNI	GGTCTC	1 cut(s)	384
BssECI	CCNNGG	4 cut(s)	39, 235, 427, 527
BssMI	GATC	2 cut(s)	120, 457
BssT1I	CCWWGG	2 cut(s)	235, 427
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	19, 77, 406, 550
BstC8I	GCNNGC	2 cut(s)	8, 142
BstDEI	CTNAG	2 cut(s)	357, 491
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	108, 440
BstKTI	GATC	2 cut(s)	123, 460
BstMAI	GTCTC	2 cut(s)	384, 589
BstMBI	GATC	2 cut(s)	120, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 358
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	39, 526
BstV1I	GCAGC	2 cut(s)	101, 339
BsuRI	GGCC	4 cut(s)	6, 129, 144, 240
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	108, 440
BtsIMutI	CAGTG	2 cut(s)	402, 546
Cac8I	GCNNGC	2 cut(s)	8, 142
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	36, 128
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	70, 325, 362, 428, 571
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	357, 491
DpnI	GATC	2 cut(s)	122, 459
DpnII	GATC	2 cut(s)	120, 457
EaeI	YGGCCR	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	235, 427
Eco147I	AGGCCT	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	156, 340
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	2 cut(s)	36, 128
EcoRI	GAATTC	2 cut(s)	65, 367
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	235, 427
EcoT38I	GRGCYC	2 cut(s)	156, 340
ErhI	CCWWGG	2 cut(s)	235, 427
FaeI	CATG	5 cut(s)	73, 328, 365, 431, 574
FaqI	GGGAC	2 cut(s)	544, 588
FatI	CATG	5 cut(s)	69, 324, 361, 427, 570
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	90, 353
FokI	GGATG	2 cut(s)	95, 447
FriOI	GRGCYC	2 cut(s)	156, 340
Fsp4HI	GCNGC	2 cut(s)	90, 353
FspBI	CTAG	2 cut(s)	50, 215
GluI	GCNGC	2 cut(s)	90, 353
GsuI	CTGGAG	2 cut(s)	140, 404
HaeIII	GGCC	4 cut(s)	6, 129, 144, 240
HapII	CCGG	2 cut(s)	41, 289
Hin1II	CATG	5 cut(s)	73, 328, 365, 431, 574
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	2 cut(s)	41, 289
HphI	GGTGA	2 cut(s)	181, 516
Hpy188III	TCNNGA	4 cut(s)	70, 80, 157, 383
HpyAV	CCTTC	4 cut(s)	202, 250, 251, 558
HpyCH4III	ACNGT	4 cut(s)	19, 77, 406, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 358
HpyF3I	CTNAG	2 cut(s)	357, 491
Hsp92II	CATG	5 cut(s)	73, 328, 365, 431, 574
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	120, 457
LmnI	GCTCC	4 cut(s)	151, 159, 385, 512
LpnPI	CCDG	8 cut(s)	20, 54, 126, 170, 302, 368, 513, 540
Lsp1109I	GCAGC	2 cut(s)	101, 339
LweI	GCATC	3 cut(s)	425, 475, 546
MaeI	CTAG	2 cut(s)	50, 215
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	122, 459
MboI	GATC	2 cut(s)	120, 457
MboII	GAAGA	2 cut(s)	130, 363
MhlI	GDGCHC	2 cut(s)	156, 340
MlsI	TGGCCA	1 cut(s)	6
MluCI	AATT	4 cut(s)	65, 284, 346, 367
MluNI	TGGCCA	1 cut(s)	6
MnlI	CCTC	5 cut(s)	95, 193, 329, 425, 549
Mox20I	TGGCCA	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	6
MseI	TTAA	2 cut(s)	96, 516
MslI	CAYNNNNRTG	3 cut(s)	407, 426, 551
Msp20I	TGGCCA	1 cut(s)	6
MspI	CCGG	2 cut(s)	41, 289
MspR9I	CCNGG	2 cut(s)	41, 528
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	28, 358
NciI	CCSGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	2 cut(s)	120, 457
NlaIII	CATG	5 cut(s)	73, 328, 365, 431, 574
NlaIV	GGNNCC	3 cut(s)	38, 130, 508
NmuCI	GTSAC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	240
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	91, 354
PpuMI	RGGWCCY	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	38, 130, 508
PspPI	GGNCC	2 cut(s)	36, 128
PspPPI	RGGWCCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	3 cut(s)	407, 426, 551
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	96, 516
SatI	GCNGC	2 cut(s)	90, 353
Sau3AI	GATC	2 cut(s)	120, 457
Sau96I	GGNCC	2 cut(s)	36, 128
ScrFI	CCNGG	2 cut(s)	41, 528
SduI	GDGCHC	2 cut(s)	156, 340
SfaNI	GCATC	3 cut(s)	425, 475, 546
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	3 cut(s)	407, 426, 551
SmlI	CTYRAG	2 cut(s)	113, 540
SmoI	CTYRAG	2 cut(s)	113, 540
Sse9I	AATT	4 cut(s)	65, 284, 346, 367
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	50, 215
SstI	GAGCTC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	39, 526
StyI	CCWWGG	2 cut(s)	235, 427
TaaI	ACNGT	4 cut(s)	19, 77, 406, 550
TasI	AATT	4 cut(s)	65, 284, 346, 367
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	96, 516
Tru9I	TTAA	2 cut(s)	96, 516
TscAI	CASTG	2 cut(s)	409, 553
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	89, 352
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	5 cut(s)	58, 86, 97, 99, 233
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	2 cut(s)	409, 553
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	3 cut(s)	65, 284, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	50, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.