HOTHEAD-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12570 |
| fragaria_vesca | FvH4_5g01380 |
| malus_domestica | MD04G1069000.v1.1 |
| prunus_persica | Prupe.5G089100_v2.0.a1 |
| pyrus_communis | pycom04g06280 |
| rosa_chinensis | RchiOBHm_Chr7g0199501 |
| rosa_laevigata | RLG00000003788 |
| rosa_multiflora | Rmu_co8367015.1_g000001 Rmu_sc0003549.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00256670 |
| rosa_rugosa | Rorug07G0049400 Rorug07G0055000 Rorug07G0055100 Rorug07G0055200 |
| rosa_samantha | Rh7AG179700 Rh7BG176500 Rh7BG183000 Rh7CG188500 Rh7DG182400 |
| rosa_wichuraiana | Rw7G015780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 300 |
| AccII | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| AclWI | GGATC | 1 cut(s) | 593 |
| AcoI | YGGCCR | 2 cut(s) | 318, 672 |
| AcsI | RAATTY | 1 cut(s) | 479 |
| AcyI | GRCGYC | 2 cut(s) | 284, 324 |
| AfaI | GTAC | 1 cut(s) | 306 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 255, 1074, 1232, 1233 |
| AflII | CTTAAG | 1 cut(s) | 881 |
| AgsI | TTSAA | 6 cut(s) | 68, 445, 757, 916, 1084, 1123 |
| AjnI | CCWGG | 1 cut(s) | 991 |
| AluBI | AGCT | 5 cut(s) | 223, 605, 816, 1087, 1108 |
| AluI | AGCT | 5 cut(s) | 223, 605, 816, 1087, 1108 |
| Alw21I | GWGCWC | 1 cut(s) | 225 |
| Alw26I | GTCTC | 6 cut(s) | 9, 256, 317, 692, 782, 1180 |
| AlwI | GGATC | 1 cut(s) | 593 |
| AoxI | GGCC | 7 cut(s) | 192, 318, 450, 472, 488, 672, 1091 |
| ApaI | GGGCCC | 1 cut(s) | 492 |
| ApeKI | GCWGC | 6 cut(s) | 58, 500, 503, 647, 1108, 1237 |
| ApoI | RAATTY | 1 cut(s) | 479 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 538 |
| AspLEI | GCGC | 2 cut(s) | 261, 338 |
| AspS9I | GGNCC | 7 cut(s) | 193, 295, 451, 472, 488, 489, 779 |
| AsuC2I | CCSGG | 5 cut(s) | 191, 256, 487, 1043, 1074 |
| AsuHPI | GGTGA | 5 cut(s) | 131, 673, 1046, 1057, 1183 |
| AvaII | GGWCC | 2 cut(s) | 295, 779 |
| BaeGI | GKGCMC | 1 cut(s) | 492 |
| BalI | TGGCCA | 1 cut(s) | 674 |
| BanII | GRGCYC | 2 cut(s) | 225, 492 |
| BbsI | GAAGAC | 2 cut(s) | 746, 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 225 |
| BbvCI | CCTCAGC | 1 cut(s) | 1088 |
| BbvI | GCAGC | 6 cut(s) | 45, 487, 490, 634, 1095, 1224 |
| BccI | CCATC | 4 cut(s) | 167, 514, 974, 1012 |
| BceAI | ACGGC | 1 cut(s) | 406 |
| BciT130I | CCWGG | 1 cut(s) | 993 |
| BclI | TGATCA | 3 cut(s) | 385, 562, 943 |
| BcnI | CCSGG | 5 cut(s) | 191, 256, 487, 1043, 1074 |
| BcoDI | GTCTC | 6 cut(s) | 9, 256, 317, 692, 782, 1180 |
| BfaI | CTAG | 1 cut(s) | 344 |
| BfmI | CTRYAG | 1 cut(s) | 352 |
| BfrI | CTTAAG | 1 cut(s) | 881 |
| BisI | GCNGC | 9 cut(s) | 59, 62, 334, 450, 501, 504, 648, 1109, 1238 |
| BlsI | GCNGC | 9 cut(s) | 60, 63, 335, 451, 502, 505, 649, 1110, 1239 |
| Bme1390I | CCNGG | 6 cut(s) | 191, 256, 487, 993, 1043, 1074 |
| Bme18I | GGWCC | 2 cut(s) | 295, 779 |
| BmgT120I | GGNCC | 7 cut(s) | 193, 295, 451, 472, 488, 489, 779 |
| BmiI | GGNNCC | 2 cut(s) | 490, 684 |
| BmrFI | CCNGG | 6 cut(s) | 191, 256, 487, 993, 1043, 1074 |
| BmsI | GCATC | 3 cut(s) | 739, 838, 1249 |
| BpiI | GAAGAC | 2 cut(s) | 746, 923 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 389, 421 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1088 |
| BpuEI | CTTGAG | 1 cut(s) | 878 |
| BpuMI | CCSGG | 5 cut(s) | 191, 256, 487, 1043, 1074 |
| BsaHI | GRCGYC | 2 cut(s) | 284, 324 |
| BsaJI | CCNNGG | 3 cut(s) | 992, 1073, 1094 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 255, 1074, 1232, 1233 |
| Bse118I | RCCGGY | 1 cut(s) | 357 |
| Bse3DI | GCAATG | 1 cut(s) | 858 |
| BseBI | CCWGG | 1 cut(s) | 993 |
| BseDI | CCNNGG | 3 cut(s) | 992, 1073, 1094 |
| BseGI | GGATG | 6 cut(s) | 75, 181, 525, 754, 870, 985 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 255, 1074, 1232, 1233 |
| BseMI | GCAATG | 1 cut(s) | 858 |
| BseMII | CTCAG | 3 cut(s) | 322, 642, 1079 |
| BseRI | GAGGAG | 7 cut(s) | 42, 145, 215, 448, 615, 854, 1198 |
| BseSI | GKGCMC | 1 cut(s) | 492 |
| BseX3I | CGGCCG | 1 cut(s) | 318 |
| BseXI | GCAGC | 6 cut(s) | 45, 487, 490, 634, 1095, 1224 |
| BsgI | GTGCAG | 1 cut(s) | 641 |
| Bsh1236I | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| Bsh1285I | CGRYCG | 3 cut(s) | 235, 321, 331 |
| BshFI | GGCC | 7 cut(s) | 194, 320, 452, 474, 490, 674, 1093 |
| BsiEI | CGRYCG | 3 cut(s) | 235, 321, 331 |
| BsiHKAI | GWGCWC | 1 cut(s) | 225 |
| BsiSI | CCGG | 8 cut(s) | 16, 191, 256, 358, 475, 486, 1042, 1073 |
| BslFI | GGGAC | 1 cut(s) | 452 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 255, 1074, 1232, 1233 |
| BsmAI | GTCTC | 6 cut(s) | 9, 256, 317, 692, 782, 1180 |
| BsmBI | CGTCTC | 2 cut(s) | 256, 1180 |
| BsmFI | GGGAC | 1 cut(s) | 452 |
| BsnI | GGCC | 7 cut(s) | 194, 320, 452, 474, 490, 674, 1093 |
| Bsp120I | GGGCCC | 1 cut(s) | 488 |
| Bsp1286I | GDGCHC | 2 cut(s) | 225, 492 |
| Bsp143I | GATC | 4 cut(s) | 385, 562, 585, 943 |
| BspANI | GGCC | 7 cut(s) | 194, 320, 452, 474, 490, 674, 1093 |
| BspCNI | CTCAG | 3 cut(s) | 321, 643, 1080 |
| BspFNI | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| BspLI | GGNNCC | 2 cut(s) | 490, 684 |
| BspPI | GGATC | 1 cut(s) | 593 |
| BspTI | CTTAAG | 1 cut(s) | 881 |
| BsrBI | CCGCTC | 1 cut(s) | 300 |
| BsrDI | GCAATG | 1 cut(s) | 858 |
| BsrFI | RCCGGY | 1 cut(s) | 357 |
| BssAI | RCCGGY | 1 cut(s) | 357 |
| BssECI | CCNNGG | 3 cut(s) | 992, 1073, 1094 |
| BssMI | GATC | 4 cut(s) | 385, 562, 585, 943 |
| BssNI | GRCGYC | 2 cut(s) | 284, 324 |
| Bst2UI | CCWGG | 1 cut(s) | 993 |
| Bst6I | CTCTTC | 2 cut(s) | 52, 1175 |
| BstACI | GRCGYC | 2 cut(s) | 284, 324 |
| BstAFI | CTTAAG | 1 cut(s) | 881 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstC8I | GCNNGC | 3 cut(s) | 359, 546, 1200 |
| BstDEI | CTNAG | 3 cut(s) | 308, 651, 1088 |
| BstF5I | GGATG | 6 cut(s) | 75, 181, 525, 754, 870, 985 |
| BstFNI | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| BstHHI | GCGC | 2 cut(s) | 261, 338 |
| BstKTI | GATC | 4 cut(s) | 388, 565, 588, 946 |
| BstMAI | GTCTC | 6 cut(s) | 9, 256, 317, 692, 782, 1180 |
| BstMBI | GATC | 4 cut(s) | 385, 562, 585, 943 |
| BstMCI | CGRYCG | 3 cut(s) | 235, 321, 331 |
| BstNI | CCWGG | 1 cut(s) | 993 |
| BstSCI | CCNGG | 6 cut(s) | 189, 254, 485, 991, 1041, 1072 |
| BstSFI | CTRYAG | 1 cut(s) | 352 |
| BstSLI | GKGCMC | 1 cut(s) | 492 |
| BstUI | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| BstV1I | GCAGC | 6 cut(s) | 45, 487, 490, 634, 1095, 1224 |
| BstV2I | GAAGAC | 2 cut(s) | 746, 923 |
| BstZI | CGGCCG | 1 cut(s) | 318 |
| BsuRI | GGCC | 7 cut(s) | 194, 320, 452, 474, 490, 674, 1093 |
| BtsCI | GGATG | 6 cut(s) | 75, 181, 525, 754, 870, 985 |
| BtsIMutI | CAGTG | 1 cut(s) | 1168 |
| Cac8I | GCNNGC | 3 cut(s) | 359, 546, 1200 |
| CfoI | GCGC | 2 cut(s) | 261, 338 |
| Cfr10I | RCCGGY | 1 cut(s) | 357 |
| Cfr13I | GGNCC | 7 cut(s) | 193, 295, 451, 472, 488, 489, 779 |
| CseI | GACGC | 4 cut(s) | 117, 250, 292, 332 |
| Csp6I | GTAC | 1 cut(s) | 305 |
| CviAII | CATG | 3 cut(s) | 455, 947, 1112 |
| CviQI | GTAC | 1 cut(s) | 305 |
| DdeI | CTNAG | 3 cut(s) | 308, 651, 1088 |
| DpnI | GATC | 4 cut(s) | 387, 564, 587, 945 |
| DpnII | GATC | 4 cut(s) | 385, 562, 585, 943 |
| EaeI | YGGCCR | 2 cut(s) | 318, 672 |
| EagI | CGGCCG | 1 cut(s) | 318 |
| Eam1104I | CTCTTC | 2 cut(s) | 52, 1175 |
| EarI | CTCTTC | 2 cut(s) | 52, 1175 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Ecl136II | GAGCTC | 1 cut(s) | 223 |
| EclXI | CGGCCG | 1 cut(s) | 318 |
| Eco24I | GRGCYC | 2 cut(s) | 225, 492 |
| Eco47I | GGWCC | 2 cut(s) | 295, 779 |
| Eco52I | CGGCCG | 1 cut(s) | 318 |
| Eco53kI | GAGCTC | 1 cut(s) | 223 |
| EcoICRI | GAGCTC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 991 |
| EcoT22I | ATGCAT | 1 cut(s) | 754 |
| EcoT38I | GRGCYC | 2 cut(s) | 225, 492 |
| Esp3I | CGTCTC | 2 cut(s) | 256, 1180 |
| FaeI | CATG | 3 cut(s) | 458, 950, 1115 |
| FaqI | GGGAC | 1 cut(s) | 452 |
| FatI | CATG | 3 cut(s) | 454, 946, 1111 |
| FauI | CCCGC | 1 cut(s) | 820 |
| FauNDI | CATATG | 1 cut(s) | 567 |
| FbaI | TGATCA | 3 cut(s) | 385, 562, 943 |
| Fnu4HI | GCNGC | 9 cut(s) | 59, 62, 334, 450, 501, 504, 648, 1109, 1238 |
| FokI | GGATG | 6 cut(s) | 62, 168, 532, 761, 877, 992 |
| FriOI | GRGCYC | 2 cut(s) | 225, 492 |
| Fsp4HI | GCNGC | 9 cut(s) | 59, 62, 334, 450, 501, 504, 648, 1109, 1238 |
| FspBI | CTAG | 1 cut(s) | 344 |
| GlaI | GCGC | 2 cut(s) | 260, 337 |
| GluI | GCNGC | 9 cut(s) | 59, 62, 334, 450, 501, 504, 648, 1109, 1238 |
| HaeIII | GGCC | 7 cut(s) | 194, 320, 452, 474, 490, 674, 1093 |
| HapII | CCGG | 8 cut(s) | 16, 191, 256, 358, 475, 486, 1042, 1073 |
| HgaI | GACGC | 4 cut(s) | 117, 250, 292, 332 |
| HhaI | GCGC | 2 cut(s) | 261, 338 |
| Hin1I | GRCGYC | 2 cut(s) | 284, 324 |
| Hin1II | CATG | 3 cut(s) | 458, 950, 1115 |
| Hin6I | GCGC | 2 cut(s) | 259, 336 |
| HinP1I | GCGC | 2 cut(s) | 259, 336 |
| HinfI | GANTC | 4 cut(s) | 245, 348, 400, 463 |
| HpaII | CCGG | 8 cut(s) | 16, 191, 256, 358, 475, 486, 1042, 1073 |
| HphI | GGTGA | 5 cut(s) | 131, 673, 1046, 1057, 1183 |
| Hpy166II | GTNNAC | 1 cut(s) | 418 |
| Hpy188I | TCNGA | 5 cut(s) | 282, 687, 783, 909, 1253 |
| Hpy188III | TCNNGA | 4 cut(s) | 367, 380, 589, 1123 |
| Hpy8I | GTNNAC | 1 cut(s) | 418 |
| Hpy99I | CGWCG | 4 cut(s) | 286, 326, 398, 877 |
| HpyAV | CCTTC | 8 cut(s) | 160, 283, 297, 528, 619, 967, 1144, 1162 |
| HpyCH4IV | ACGT | 1 cut(s) | 1189 |
| HpyCH4V | TGCA | 8 cut(s) | 10, 622, 752, 851, 1061, 1102, 1111, 1240 |
| HpyF3I | CTNAG | 3 cut(s) | 308, 651, 1088 |
| HpySE526I | ACGT | 1 cut(s) | 1189 |
| Hsp92I | GRCGYC | 2 cut(s) | 284, 324 |
| Hsp92II | CATG | 3 cut(s) | 458, 950, 1115 |
| HspAI | GCGC | 2 cut(s) | 259, 336 |
| KroI | GCCGGC | 1 cut(s) | 357 |
| KroNI | GCCGGC | 1 cut(s) | 359 |
| Ksp22I | TGATCA | 3 cut(s) | 385, 562, 943 |
| Kzo9I | GATC | 4 cut(s) | 385, 562, 585, 943 |
| LmnI | GCTCC | 5 cut(s) | 33, 228, 305, 602, 813 |
| Lsp1109I | GCAGC | 6 cut(s) | 45, 487, 490, 634, 1095, 1224 |
| LweI | GCATC | 3 cut(s) | 739, 838, 1249 |
| MaeI | CTAG | 1 cut(s) | 344 |
| MaeII | ACGT | 1 cut(s) | 1189 |
| MalI | GATC | 4 cut(s) | 387, 564, 587, 945 |
| MbiI | CCGCTC | 1 cut(s) | 300 |
| MboI | GATC | 4 cut(s) | 385, 562, 585, 943 |
| MboII | GAAGA | 6 cut(s) | 39, 751, 928, 976, 979, 1192 |
| MhlI | GDGCHC | 2 cut(s) | 225, 492 |
| MlsI | TGGCCA | 1 cut(s) | 674 |
| MluCI | AATT | 4 cut(s) | 197, 339, 479, 611 |
| MluNI | TGGCCA | 1 cut(s) | 674 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MmeI | TCCRAC | 1 cut(s) | 305 |
| Mox20I | TGGCCA | 1 cut(s) | 674 |
| Mph1103I | ATGCAT | 1 cut(s) | 754 |
| MroNI | GCCGGC | 1 cut(s) | 357 |
| MroXI | GAANNNNTTC | 1 cut(s) | 538 |
| MscI | TGGCCA | 1 cut(s) | 674 |
| MseI | TTAA | 3 cut(s) | 882, 1194, 1218 |
| Msp20I | TGGCCA | 1 cut(s) | 674 |
| MspA1I | CMGCKG | 2 cut(s) | 58, 500 |
| MspCI | CTTAAG | 1 cut(s) | 881 |
| MspI | CCGG | 8 cut(s) | 16, 191, 256, 358, 475, 486, 1042, 1073 |
| MspR9I | CCNGG | 6 cut(s) | 191, 256, 487, 993, 1043, 1074 |
| MvaI | CCWGG | 1 cut(s) | 993 |
| MvnI | CGCG | 5 cut(s) | 128, 231, 237, 261, 336 |
| NaeI | GCCGGC | 1 cut(s) | 359 |
| NciI | CCSGG | 5 cut(s) | 191, 256, 487, 1043, 1074 |
| NdeI | CATATG | 1 cut(s) | 567 |
| NdeII | GATC | 4 cut(s) | 385, 562, 585, 943 |
| NgoMIV | GCCGGC | 1 cut(s) | 357 |
| NlaIII | CATG | 3 cut(s) | 458, 950, 1115 |
| NlaIV | GGNNCC | 2 cut(s) | 490, 684 |
| NmeAIII | GCCGAG | 2 cut(s) | 296, 1119 |
| NsiI | ATGCAT | 1 cut(s) | 754 |
| PdiI | GCCGGC | 1 cut(s) | 359 |
| PdmI | GAANNNNTTC | 1 cut(s) | 538 |
| PfeI | GAWTC | 3 cut(s) | 348, 400, 463 |
| PflFI | GACNNNGTC | 1 cut(s) | 248 |
| PkrI | GCNGC | 9 cut(s) | 60, 63, 335, 451, 502, 505, 649, 1110, 1239 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| Psp124BI | GAGCTC | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 991 |
| PspGI | CCWGG | 1 cut(s) | 991 |
| PspN4I | GGNNCC | 2 cut(s) | 490, 684 |
| PspOMI | GGGCCC | 1 cut(s) | 488 |
| PspPI | GGNCC | 7 cut(s) | 193, 295, 451, 472, 488, 489, 779 |
| PsyI | GACNNNGTC | 1 cut(s) | 248 |
| RsaI | GTAC | 1 cut(s) | 306 |
| RsaNI | GTAC | 1 cut(s) | 305 |
| SacI | GAGCTC | 1 cut(s) | 225 |
| SaqAI | TTAA | 3 cut(s) | 882, 1194, 1218 |
| SatI | GCNGC | 9 cut(s) | 59, 62, 334, 450, 501, 504, 648, 1109, 1238 |
| Sau3AI | GATC | 4 cut(s) | 385, 562, 585, 943 |
| Sau96I | GGNCC | 7 cut(s) | 193, 295, 451, 472, 488, 489, 779 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 6 cut(s) | 191, 256, 487, 993, 1043, 1074 |
| SduI | GDGCHC | 2 cut(s) | 225, 492 |
| SfaNI | GCATC | 3 cut(s) | 739, 838, 1249 |
| SfcI | CTRYAG | 1 cut(s) | 352 |
| SinI | GGWCC | 2 cut(s) | 295, 779 |
| SmlI | CTYRAG | 2 cut(s) | 857, 881 |
| SmoI | CTYRAG | 2 cut(s) | 857, 881 |
| Sse9I | AATT | 4 cut(s) | 197, 339, 479, 611 |
| SspMI | CTAG | 1 cut(s) | 344 |
| SstI | GAGCTC | 1 cut(s) | 225 |
| StyD4I | CCNGG | 6 cut(s) | 189, 254, 485, 991, 1041, 1072 |
| TaiI | ACGT | 1 cut(s) | 1192 |
| TaqI | TCGA | 4 cut(s) | 269, 368, 381, 1243 |
| TasI | AATT | 4 cut(s) | 197, 339, 479, 611 |
| TauI | GCSGC | 3 cut(s) | 64, 336, 452 |
| TfiI | GAWTC | 3 cut(s) | 348, 400, 463 |
| Tru1I | TTAA | 3 cut(s) | 882, 1194, 1218 |
| Tru9I | TTAA | 3 cut(s) | 882, 1194, 1218 |
| TscAI | CASTG | 1 cut(s) | 1168 |
| TseI | GCWGC | 6 cut(s) | 58, 500, 503, 647, 1108, 1237 |
| TspDTI | ATGAA | 3 cut(s) | 755, 881, 986 |
| TspGWI | ACGGA | 3 cut(s) | 238, 292, 758 |
| TspRI | CASTG | 1 cut(s) | 1168 |
| Tth111I | GACNNNGTC | 1 cut(s) | 248 |
| Vha464I | CTTAAG | 1 cut(s) | 881 |
| VpaK11BI | GGWCC | 2 cut(s) | 295, 779 |
| XapI | RAATTY | 1 cut(s) | 479 |
| XmnI | GAANNNNTTC | 1 cut(s) | 538 |
| XspI | CTAG | 1 cut(s) | 344 |
| Zsp2I | ATGCAT | 1 cut(s) | 754 |