Rorug07G0055200

HOTHEAD-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
3908022 .. 3909367
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0055200.1

Sequence Viewer

Length: 1254 bp
ATGTCTCTGCAACTCCGGCGACTTCTGCTCCGCCACCTCTCAACCTCTTCTCCTCCGCTGCCGCTTCAAACCCACATCCCATTTCCCTCAAACAAACCCACCCATTTCCACAACACCATAACCACCGCGTCAATCTCTCACCCCAAACCCTTCTCCTCCATCTCAACCCGACCCGACCCACATCCCAACCCGGCCCAATTAGCCCACTCCCTCTCCACCGAGCTCCTCCGCGACCGCGACCCCGACTCCGTCTCCCGGCGCGTCCAATCGACCTTCACTCCGACGCCTTCTCTGGTCCGCTCCGTACTCAGTCTCTCGGCCGACGCCGACCGCCGCGCAATTCTAGGATTCTACAGCCGGCTCATCTCGAATAATAATCTCGATGATCACGGCGACGAGATTCTCTCGTTGTTCGTGGACTATTTCGGGCAGAGGAGGGACTTCAAGGCGGCCCATGATGTGATTCGTATGGGCCGGAAATTCGCCGGGCCCAAAACCGCTGCTGCGAACTTCGGTGGGATGGTTAGAGCAGGAAGGGTTTCGCAGGCTGTTGCTTTTTTTGATCATATGGACATTGAGTATGGGATCAAGAGGGAGAGAGGAGCTGTCAAATTGGCGGTGCAGAAGGTCTGCGAAAATGCTTTTGCTGCTGAGAGAATGGTGAGGCGGTTGGCCAATGAGGTTCCGAAAAATGTGGAGACTTGGAATGTGGTGGTCTGTTGTTTGTGTAAGATTAGGAAGACGGAGGATGCATTGAAGTTGTTTCATACAATGTGTGGTCCGAATGAGACTACTTATGTTGTGTTGGTTAGGAGCTTGTATAAGGCGGGGAGGATTGAGGAGGGAGATGCAATGCTTGAGAGGATGAACTCGTCGGGGCTTAAGGTTGATAACAAGGTTTATTATCTGATTTTGAAGACATTGTGTAGTGTTGGCAAGTTTGATCATGCTGTGAGCCTTGTGAAGAAGATGAAGGAGGATGGGTGTGAGCCTGGGGTCAAGGTTTATCTGCTGATGATGGATAAGTTGAGTGGTGATTACCGGGCTGATAAAGCGGTTGCACTCACCAAGCCGGGGCAGTTGAAGCTGAGGCCGAGGTTGCACAAGCTGCATGAGCCTTTCAAGAGGAAGCAGAAGCCTGTGAAGCAGAAGGAAACAATCAGTGAGAAGGTGAAAAGGAAGAGGAGACGTATTAAGCAAGCAAGGTTGCTATTTGTTAAGAAGCCCATAAGAGGGCTGCATCGACCCTTCTGA

Protein Analysis

417

Amino Acids

47.31

Weight (kDa)

10.15

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 230 - 275 2.7e-07 PPR repeat family
PPR_2 PF13041 303 - 343 8.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 5 cut(s) 128, 231, 237, 261, 336
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 318, 672
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 2 cut(s) 284, 324
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 4 cut(s) 255, 1074, 1232, 1233
AflII CTTAAG 1 cut(s) 881
AgsI TTSAA 6 cut(s) 68, 445, 757, 916, 1084, 1123
AjnI CCWGG 1 cut(s) 991
AluBI AGCT 5 cut(s) 223, 605, 816, 1087, 1108
AluI AGCT 5 cut(s) 223, 605, 816, 1087, 1108
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 6 cut(s) 9, 256, 317, 692, 782, 1180
AlwI GGATC 1 cut(s) 593
AoxI GGCC 7 cut(s) 192, 318, 450, 472, 488, 672, 1091
ApaI GGGCCC 1 cut(s) 492
ApeKI GCWGC 6 cut(s) 58, 500, 503, 647, 1108, 1237
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 538
AspLEI GCGC 2 cut(s) 261, 338
AspS9I GGNCC 7 cut(s) 193, 295, 451, 472, 488, 489, 779
AsuC2I CCSGG 5 cut(s) 191, 256, 487, 1043, 1074
AsuHPI GGTGA 5 cut(s) 131, 673, 1046, 1057, 1183
AvaII GGWCC 2 cut(s) 295, 779
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 674
BanII GRGCYC 2 cut(s) 225, 492
BbsI GAAGAC 2 cut(s) 746, 923
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 1088
BbvI GCAGC 6 cut(s) 45, 487, 490, 634, 1095, 1224
BccI CCATC 4 cut(s) 167, 514, 974, 1012
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 993
BclI TGATCA 3 cut(s) 385, 562, 943
BcnI CCSGG 5 cut(s) 191, 256, 487, 1043, 1074
BcoDI GTCTC 6 cut(s) 9, 256, 317, 692, 782, 1180
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 352
BfrI CTTAAG 1 cut(s) 881
BisI GCNGC 9 cut(s) 59, 62, 334, 450, 501, 504, 648, 1109, 1238
BlsI GCNGC 9 cut(s) 60, 63, 335, 451, 502, 505, 649, 1110, 1239
Bme1390I CCNGG 6 cut(s) 191, 256, 487, 993, 1043, 1074
Bme18I GGWCC 2 cut(s) 295, 779
BmgT120I GGNCC 7 cut(s) 193, 295, 451, 472, 488, 489, 779
BmiI GGNNCC 2 cut(s) 490, 684
BmrFI CCNGG 6 cut(s) 191, 256, 487, 993, 1043, 1074
BmsI GCATC 3 cut(s) 739, 838, 1249
BpiI GAAGAC 2 cut(s) 746, 923
BplI GAGNNNNNCTC 2 cut(s) 389, 421
Bpu10I CCTNAGC 1 cut(s) 1088
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 5 cut(s) 191, 256, 487, 1043, 1074
BsaHI GRCGYC 2 cut(s) 284, 324
BsaJI CCNNGG 3 cut(s) 992, 1073, 1094
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 1074, 1232, 1233
Bse118I RCCGGY 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 858
BseBI CCWGG 1 cut(s) 993
BseDI CCNNGG 3 cut(s) 992, 1073, 1094
BseGI GGATG 6 cut(s) 75, 181, 525, 754, 870, 985
BseLI CCNNNNNNNGG 4 cut(s) 255, 1074, 1232, 1233
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 3 cut(s) 322, 642, 1079
BseRI GAGGAG 7 cut(s) 42, 145, 215, 448, 615, 854, 1198
BseSI GKGCMC 1 cut(s) 492
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 6 cut(s) 45, 487, 490, 634, 1095, 1224
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 5 cut(s) 128, 231, 237, 261, 336
Bsh1285I CGRYCG 3 cut(s) 235, 321, 331
BshFI GGCC 7 cut(s) 194, 320, 452, 474, 490, 674, 1093
BsiEI CGRYCG 3 cut(s) 235, 321, 331
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 8 cut(s) 16, 191, 256, 358, 475, 486, 1042, 1073
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 4 cut(s) 255, 1074, 1232, 1233
BsmAI GTCTC 6 cut(s) 9, 256, 317, 692, 782, 1180
BsmBI CGTCTC 2 cut(s) 256, 1180
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 7 cut(s) 194, 320, 452, 474, 490, 674, 1093
Bsp120I GGGCCC 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 225, 492
Bsp143I GATC 4 cut(s) 385, 562, 585, 943
BspANI GGCC 7 cut(s) 194, 320, 452, 474, 490, 674, 1093
BspCNI CTCAG 3 cut(s) 321, 643, 1080
BspFNI CGCG 5 cut(s) 128, 231, 237, 261, 336
BspLI GGNNCC 2 cut(s) 490, 684
BspPI GGATC 1 cut(s) 593
BspTI CTTAAG 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 992, 1073, 1094
BssMI GATC 4 cut(s) 385, 562, 585, 943
BssNI GRCGYC 2 cut(s) 284, 324
Bst2UI CCWGG 1 cut(s) 993
Bst6I CTCTTC 2 cut(s) 52, 1175
BstACI GRCGYC 2 cut(s) 284, 324
BstAFI CTTAAG 1 cut(s) 881
BstAPI GCANNNNNTGC 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 359, 546, 1200
BstDEI CTNAG 3 cut(s) 308, 651, 1088
BstF5I GGATG 6 cut(s) 75, 181, 525, 754, 870, 985
BstFNI CGCG 5 cut(s) 128, 231, 237, 261, 336
BstHHI GCGC 2 cut(s) 261, 338
BstKTI GATC 4 cut(s) 388, 565, 588, 946
BstMAI GTCTC 6 cut(s) 9, 256, 317, 692, 782, 1180
BstMBI GATC 4 cut(s) 385, 562, 585, 943
BstMCI CGRYCG 3 cut(s) 235, 321, 331
BstNI CCWGG 1 cut(s) 993
BstSCI CCNGG 6 cut(s) 189, 254, 485, 991, 1041, 1072
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 492
BstUI CGCG 5 cut(s) 128, 231, 237, 261, 336
BstV1I GCAGC 6 cut(s) 45, 487, 490, 634, 1095, 1224
BstV2I GAAGAC 2 cut(s) 746, 923
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 7 cut(s) 194, 320, 452, 474, 490, 674, 1093
BtsCI GGATG 6 cut(s) 75, 181, 525, 754, 870, 985
BtsIMutI CAGTG 1 cut(s) 1168
Cac8I GCNNGC 3 cut(s) 359, 546, 1200
CfoI GCGC 2 cut(s) 261, 338
Cfr10I RCCGGY 1 cut(s) 357
Cfr13I GGNCC 7 cut(s) 193, 295, 451, 472, 488, 489, 779
CseI GACGC 4 cut(s) 117, 250, 292, 332
Csp6I GTAC 1 cut(s) 305
CviAII CATG 3 cut(s) 455, 947, 1112
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 308, 651, 1088
DpnI GATC 4 cut(s) 387, 564, 587, 945
DpnII GATC 4 cut(s) 385, 562, 585, 943
EaeI YGGCCR 2 cut(s) 318, 672
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 52, 1175
EarI CTCTTC 2 cut(s) 52, 1175
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 223
EclXI CGGCCG 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 225, 492
Eco47I GGWCC 2 cut(s) 295, 779
Eco52I CGGCCG 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 991
EcoT22I ATGCAT 1 cut(s) 754
EcoT38I GRGCYC 2 cut(s) 225, 492
Esp3I CGTCTC 2 cut(s) 256, 1180
FaeI CATG 3 cut(s) 458, 950, 1115
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 454, 946, 1111
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 1 cut(s) 567
FbaI TGATCA 3 cut(s) 385, 562, 943
Fnu4HI GCNGC 9 cut(s) 59, 62, 334, 450, 501, 504, 648, 1109, 1238
FokI GGATG 6 cut(s) 62, 168, 532, 761, 877, 992
FriOI GRGCYC 2 cut(s) 225, 492
Fsp4HI GCNGC 9 cut(s) 59, 62, 334, 450, 501, 504, 648, 1109, 1238
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 260, 337
GluI GCNGC 9 cut(s) 59, 62, 334, 450, 501, 504, 648, 1109, 1238
HaeIII GGCC 7 cut(s) 194, 320, 452, 474, 490, 674, 1093
HapII CCGG 8 cut(s) 16, 191, 256, 358, 475, 486, 1042, 1073
HgaI GACGC 4 cut(s) 117, 250, 292, 332
HhaI GCGC 2 cut(s) 261, 338
Hin1I GRCGYC 2 cut(s) 284, 324
Hin1II CATG 3 cut(s) 458, 950, 1115
Hin6I GCGC 2 cut(s) 259, 336
HinP1I GCGC 2 cut(s) 259, 336
HinfI GANTC 4 cut(s) 245, 348, 400, 463
HpaII CCGG 8 cut(s) 16, 191, 256, 358, 475, 486, 1042, 1073
HphI GGTGA 5 cut(s) 131, 673, 1046, 1057, 1183
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 5 cut(s) 282, 687, 783, 909, 1253
Hpy188III TCNNGA 4 cut(s) 367, 380, 589, 1123
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 286, 326, 398, 877
HpyAV CCTTC 8 cut(s) 160, 283, 297, 528, 619, 967, 1144, 1162
HpyCH4IV ACGT 1 cut(s) 1189
HpyCH4V TGCA 8 cut(s) 10, 622, 752, 851, 1061, 1102, 1111, 1240
HpyF3I CTNAG 3 cut(s) 308, 651, 1088
HpySE526I ACGT 1 cut(s) 1189
Hsp92I GRCGYC 2 cut(s) 284, 324
Hsp92II CATG 3 cut(s) 458, 950, 1115
HspAI GCGC 2 cut(s) 259, 336
KroI GCCGGC 1 cut(s) 357
KroNI GCCGGC 1 cut(s) 359
Ksp22I TGATCA 3 cut(s) 385, 562, 943
Kzo9I GATC 4 cut(s) 385, 562, 585, 943
LmnI GCTCC 5 cut(s) 33, 228, 305, 602, 813
Lsp1109I GCAGC 6 cut(s) 45, 487, 490, 634, 1095, 1224
LweI GCATC 3 cut(s) 739, 838, 1249
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 1189
MalI GATC 4 cut(s) 387, 564, 587, 945
MbiI CCGCTC 1 cut(s) 300
MboI GATC 4 cut(s) 385, 562, 585, 943
MboII GAAGA 6 cut(s) 39, 751, 928, 976, 979, 1192
MhlI GDGCHC 2 cut(s) 225, 492
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 4 cut(s) 197, 339, 479, 611
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 754
MroNI GCCGGC 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 538
MscI TGGCCA 1 cut(s) 674
MseI TTAA 3 cut(s) 882, 1194, 1218
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 2 cut(s) 58, 500
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 8 cut(s) 16, 191, 256, 358, 475, 486, 1042, 1073
MspR9I CCNGG 6 cut(s) 191, 256, 487, 993, 1043, 1074
MvaI CCWGG 1 cut(s) 993
MvnI CGCG 5 cut(s) 128, 231, 237, 261, 336
NaeI GCCGGC 1 cut(s) 359
NciI CCSGG 5 cut(s) 191, 256, 487, 1043, 1074
NdeI CATATG 1 cut(s) 567
NdeII GATC 4 cut(s) 385, 562, 585, 943
NgoMIV GCCGGC 1 cut(s) 357
NlaIII CATG 3 cut(s) 458, 950, 1115
NlaIV GGNNCC 2 cut(s) 490, 684
NmeAIII GCCGAG 2 cut(s) 296, 1119
NsiI ATGCAT 1 cut(s) 754
PdiI GCCGGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 3 cut(s) 348, 400, 463
PflFI GACNNNGTC 1 cut(s) 248
PkrI GCNGC 9 cut(s) 60, 63, 335, 451, 502, 505, 649, 1110, 1239
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 991
PspGI CCWGG 1 cut(s) 991
PspN4I GGNNCC 2 cut(s) 490, 684
PspOMI GGGCCC 1 cut(s) 488
PspPI GGNCC 7 cut(s) 193, 295, 451, 472, 488, 489, 779
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 882, 1194, 1218
SatI GCNGC 9 cut(s) 59, 62, 334, 450, 501, 504, 648, 1109, 1238
Sau3AI GATC 4 cut(s) 385, 562, 585, 943
Sau96I GGNCC 7 cut(s) 193, 295, 451, 472, 488, 489, 779
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 6 cut(s) 191, 256, 487, 993, 1043, 1074
SduI GDGCHC 2 cut(s) 225, 492
SfaNI GCATC 3 cut(s) 739, 838, 1249
SfcI CTRYAG 1 cut(s) 352
SinI GGWCC 2 cut(s) 295, 779
SmlI CTYRAG 2 cut(s) 857, 881
SmoI CTYRAG 2 cut(s) 857, 881
Sse9I AATT 4 cut(s) 197, 339, 479, 611
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 6 cut(s) 189, 254, 485, 991, 1041, 1072
TaiI ACGT 1 cut(s) 1192
TaqI TCGA 4 cut(s) 269, 368, 381, 1243
TasI AATT 4 cut(s) 197, 339, 479, 611
TauI GCSGC 3 cut(s) 64, 336, 452
TfiI GAWTC 3 cut(s) 348, 400, 463
Tru1I TTAA 3 cut(s) 882, 1194, 1218
Tru9I TTAA 3 cut(s) 882, 1194, 1218
TscAI CASTG 1 cut(s) 1168
TseI GCWGC 6 cut(s) 58, 500, 503, 647, 1108, 1237
TspDTI ATGAA 3 cut(s) 755, 881, 986
TspGWI ACGGA 3 cut(s) 238, 292, 758
TspRI CASTG 1 cut(s) 1168
Tth111I GACNNNGTC 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 2 cut(s) 295, 779
XapI RAATTY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.