Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010789

Physical Location & Seq

Genomic Coordinates Forward (+)

3555207 .. 3555795

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0049400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTTCAAAACAAATAAAGCTTGCTACTTTTCTAGAAATCCCAATCGAGGAAGATGGGACACAGAGAAGCCGTACCACAACATTCGCTCATCAAACCCGTGCGCTTACTATAAGCCCCGTAAGTTCCAGGCACAATGGCAGCACACTATACGACTCGTTTGAGCTTCGAGCCGTGACTCAACAACTTAATAGAGCAATTCAAGGTTCGAAAGCATCCACTCGATCACCTCTCTACATGTACTGCTTCAATTCACCCTTGTACAGAGAAAGTTTAGATCGGATGCGCAAAGAAAGCGTCAAGACGCCAAAGAGAATTTTGTGCTCACAGGTGTCTTGTTCAACAACCTGTCACAGAAAGTCGAGCCCACCAGAGCCTACAAAGGGGTTTGTATCAAGAGCATGGAACAAAGTGAAGCAAGGTCTTGTGAGGAATAAGCAAAGTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

150

Amino Acids

17.03

Weight (kDa)

10.33

Isoelectric Point (pI)

78.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12570
fragaria_vesca	FvH4_5g01380
malus_domestica	MD04G1069000.v1.1
prunus_persica	Prupe.5G089100_v2.0.a1
pyrus_communis	pycom04g06280
rosa_chinensis	RchiOBHm_Chr7g0199501
rosa_laevigata	RLG00000003788
rosa_multiflora	Rmu_co8367015.1_g000001 Rmu_sc0003549.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256670
rosa_rugosa	Rorug07G0049400 Rorug07G0055000 Rorug07G0055100 Rorug07G0055200
rosa_samantha	Rh7AG179700 Rh7BG176500 Rh7BG183000 Rh7CG188500 Rh7DG182400
rosa_wichuraiana	Rw7G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	3 cut(s)	76, 242, 263
AfiI	CCNNNNNNNGG	2 cut(s)	49, 383
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	4 cut(s)	9, 203, 250, 342
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	22, 166
AluI	AGCT	2 cut(s)	22, 166
Alw21I	GWGCWC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	315
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspLEI	GCGC	2 cut(s)	106, 288
AsuHPI	GGTGA	2 cut(s)	219, 246
AsuII	TTCGAA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	2 cut(s)	57, 158
BciT130I	CCWGG	1 cut(s)	130
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	224, 273
Bpu14I	TTCGAA	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 383
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	215, 288
BseLI	CCNNNNNNNGG	2 cut(s)	49, 383
BseXI	GCAGC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	49, 383
BsmFI	GGGAC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	326, 368
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	224, 277
BspT104I	TTCGAA	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	261
BssMI	GATC	2 cut(s)	224, 277
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	215, 288
BstHHI	GCGC	2 cut(s)	106, 288
BstKTI	GATC	2 cut(s)	227, 280
BstMBI	GATC	2 cut(s)	224, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	215, 288
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	2 cut(s)	106, 288
CseI	GACGC	2 cut(s)	286, 313
Csp6I	GTAC	3 cut(s)	75, 241, 262
CviAII	CATG	2 cut(s)	238, 402
CviJI	RGCY	8 cut(s)	5, 22, 72, 117, 166, 173, 366, 376
CviKI_1	RGCY	8 cut(s)	5, 22, 72, 117, 166, 173, 366, 376
CviQI	GTAC	3 cut(s)	75, 241, 262
DpnI	GATC	2 cut(s)	226, 279
DpnII	GATC	2 cut(s)	224, 277
Eco24I	GRGCYC	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	2 cut(s)	241, 405
FaiI	YATR	4 cut(s)	113, 151, 239, 403
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	237, 401
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	2 cut(s)	202, 295
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	35
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	2 cut(s)	105, 287
GluI	GCNGC	1 cut(s)	142
HgaI	GACGC	2 cut(s)	286, 313
HhaI	GCGC	2 cut(s)	106, 288
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	241, 405
Hin6I	GCGC	2 cut(s)	104, 286
HinP1I	GCGC	2 cut(s)	104, 286
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	155, 178
HphI	GGTGA	2 cut(s)	219, 246
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	3 cut(s)	35, 301, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	241, 405
HspAI	GCGC	2 cut(s)	104, 286
Kzo9I	GATC	2 cut(s)	224, 277
LpnPI	CCDG	5 cut(s)	115, 142, 314, 361, 384
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	224, 273
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	175, 350, 443
MalI	GATC	2 cut(s)	226, 279
MboI	GATC	2 cut(s)	224, 277
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	326, 368
MluCI	AATT	3 cut(s)	198, 250, 315
MlyI	GAGTC	2 cut(s)	149, 172
MnlI	CCTC	3 cut(s)	43, 240, 423
MseI	TTAA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	224, 277
NlaIII	CATG	2 cut(s)	241, 405
NmuCI	GTSAC	2 cut(s)	175, 350
NsbI	TGCGCA	1 cut(s)	287
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	209
PciI	ACATGT	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	149, 172
PpsI	GAGTC	2 cut(s)	149, 172
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
RsaI	GTAC	3 cut(s)	76, 242, 263
RsaNI	GTAC	3 cut(s)	75, 241, 262
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	224, 277
SchI	GAGTC	2 cut(s)	149, 172
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	326, 368
SetI	ASST	7 cut(s)	24, 168, 208, 232, 333, 350, 424
SfaNI	GCATC	2 cut(s)	224, 273
SfuI	TTCGAA	1 cut(s)	209
Sse9I	AATT	3 cut(s)	198, 250, 315
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	128
TaqI	TCGA	5 cut(s)	48, 169, 209, 223, 362
TasI	AATT	3 cut(s)	198, 250, 315
TatI	WGTACW	2 cut(s)	240, 261
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	175, 350
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	175, 350
XapI	RAATTY	1 cut(s)	315
XbaI	TCTAGA	1 cut(s)	34
XceI	RCATGY	1 cut(s)	241
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.