Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370567.1

Orthogroup ID

OG0017287

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1121

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1121 bp

gaattgggacaggttcccctgcaggccatcctcttagccgatagttttactaccaaattctaccccgtcacccttgaacgccccaaagtgcttttgccattagtaaatgtccccatgatcagctacaccctagcttggctcaagtctgctggagtcaaggaggtctttgttttctgctgcgctcactccaagcaagtgatcaattatctagagacttctgggtggttttgtcaacctggctgcttcgcagtcaccgcaattgagtcacatgcttctgctagtgctggagatgctctgcgtttgatatacgagcgcgatgtgatccatggagattttgtcctcataagtggggatactgtgagcgacatgtcgcttactcaagtgcttcaagaacataaagagagaagaaagaaagataataatgctgtaatgacaattgttatcaaaccttctcaaatcatgacccaccaatctcgagtacttggcactggtgagctgtttatggcaatagatcctagcacgaagcagcttttgtgttacgaggaaaaggcagaccatgcaaaggaatctatattttgtcttgataagtcgttgcttgttggtaaatcttcgatttctctgcataatgatagagaggattgctatatcgacatctgctctcctgaagtcctcagccttcttgcagacaattttgattacgaagatcttcgtcatgatttattgaatggattgcttgacgatgacgttatgggatacaagatattcacacatgaaattgactctagttatgctgctaagattgacaacttccgaagctacgatgcagttagtaaggacatcattcagagagggagttacccctcgatgccagatgttaagtttacagaaatcggacatggcaccaagattgcggacaatactgaaattttaagttctgttattggggaagggtgttctattgggtcaaatgtttccatagaaggttcttatatattggacaatgtcaccatcgaagatggctgcaagctaaagcatgctgtggtttgtgatggagtggtcatgaagtccggggcaattttggaacctggagtagttttgtctttccaggttgttttaggaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:0098772 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep Hexapep_2 NTP_transferase W2

Protein Analysis

373

Amino Acids

41.04

Weight (kDa)

4.93

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24061 FvH4_4g24260 FvH4_6g02711
rosa_chinensis	RchiOBHm_Chr4g0430791
rosa_laevigata	RLG00000006950
rosa_multiflora	Rmu_co8370567.1_g000001 Rmu_sc0002620.1_g000016 Rmu_sc0020793.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372480
rosa_rugosa	Rorug04G0245700
rosa_samantha	Rh4AG301800 Rh4BG309900
rosa_wichuraiana	Rw4G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	255, 911
AclWI	GGATC	2 cut(s)	316, 506
AcsI	RAATTY	2 cut(s)	56, 924
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	135, 562
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	3 cut(s)	77, 389, 724
AjnI	CCWGG	3 cut(s)	235, 1084, 1104
AluBI	AGCT	6 cut(s)	123, 134, 496, 529, 816, 1027
AluI	AGCT	6 cut(s)	123, 134, 496, 529, 816, 1027
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	316, 506
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	5 cut(s)	177, 240, 526, 791, 1020
ApoI	RAATTY	2 cut(s)	56, 924
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	182, 315
AsuC2I	CCSGG	1 cut(s)	1069
AsuHPI	GGTGA	4 cut(s)	61, 244, 503, 997
AvaI	CYCGRG	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	899
BbvCI	CCTCAGC	1 cut(s)	671
BbvI	GCAGC	5 cut(s)	164, 227, 538, 778, 1007
BccI	CCATC	4 cut(s)	35, 1010, 1016, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	3 cut(s)	237, 1086, 1106
BciVI	GTATCC	2 cut(s)	346, 746
BclI	TGATCA	2 cut(s)	117, 198
BcnI	CCSGG	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	5 cut(s)	131, 209, 279, 516, 783
BfmI	CTRYAG	1 cut(s)	20
BfuI	GTATCC	2 cut(s)	346, 746
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	5 cut(s)	178, 241, 527, 792, 1021
BlsI	GCNGC	5 cut(s)	179, 242, 528, 793, 1022
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	4 cut(s)	237, 1069, 1086, 1106
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	3 cut(s)	15, 901, 1083
BmrFI	CCNGG	4 cut(s)	237, 1069, 1086, 1106
BmsI	GCATC	3 cut(s)	280, 811, 855
BpmI	CTGGAG	3 cut(s)	171, 306, 1107
Bpu10I	CCTNAGC	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	125, 363
BpuMI	CCSGG	1 cut(s)	1069
BsaJI	CCNNGG	2 cut(s)	325, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 562
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	3 cut(s)	237, 1086, 1106
BseDI	CCNNGG	2 cut(s)	325, 1068
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	135, 562
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	5 cut(s)	164, 227, 538, 778, 1007
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	899
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	1068
BslFI	GGGAC	2 cut(s)	21, 95
BslI	CCNNNNNNNGG	2 cut(s)	135, 562
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	21, 95
BsnI	GGCC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	117, 198, 321, 511, 703
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	2 cut(s)	255, 911
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	684
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	3 cut(s)	459, 712, 1059
BspLI	GGNNCC	3 cut(s)	15, 901, 1083
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	2 cut(s)	316, 506
BspT107I	GGYRCC	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	325, 1068
BssMI	GATC	5 cut(s)	117, 198, 321, 511, 703
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	3 cut(s)	237, 1086, 1106
Bst4CI	ACNGT	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	24, 1025, 1035
BstDEI	CTNAG	3 cut(s)	34, 671, 795
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	182, 315
BstKTI	GATC	5 cut(s)	120, 201, 324, 514, 706
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	5 cut(s)	117, 198, 321, 511, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 290, 557
BstNI	CCWGG	3 cut(s)	237, 1086, 1106
BstNSI	RCATGY	3 cut(s)	272, 370, 1037
BstSCI	CCNGG	4 cut(s)	235, 1067, 1084, 1104
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	5 cut(s)	164, 227, 538, 778, 1007
BstX2I	RGATCY	2 cut(s)	511, 703
BstYI	RGATCY	2 cut(s)	511, 703
BsuI	GTATCC	2 cut(s)	346, 746
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	24, 1025, 1035
CciI	TCATGA	3 cut(s)	459, 712, 1059
CfoI	GCGC	2 cut(s)	182, 315
Csp6I	GTAC	1 cut(s)	479
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	34, 671, 795
DpnI	GATC	5 cut(s)	119, 200, 323, 513, 705
DpnII	GATC	5 cut(s)	117, 198, 321, 511, 703
Eco130I	CCWWGG	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	474
EcoRII	CCWGG	3 cut(s)	235, 1084, 1104
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	2 cut(s)	21, 95
FbaI	TGATCA	2 cut(s)	117, 198
Fnu4HI	GCNGC	5 cut(s)	178, 241, 527, 792, 1021
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	5 cut(s)	178, 241, 527, 792, 1021
FspBI	CTAG	5 cut(s)	131, 209, 279, 516, 783
GlaI	GCGC	2 cut(s)	181, 314
GluI	GCNGC	5 cut(s)	178, 241, 527, 792, 1021
GsuI	CTGGAG	3 cut(s)	171, 306, 1107
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	1068
HhaI	GCGC	2 cut(s)	182, 315
Hin6I	GCGC	2 cut(s)	180, 313
HinP1I	GCGC	2 cut(s)	180, 313
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HinfI	GANTC	4 cut(s)	153, 263, 566, 779
HpaII	CCGG	1 cut(s)	1068
HphI	GGTGA	4 cut(s)	61, 244, 503, 997
Hpy166II	GTNNAC	2 cut(s)	233, 882
Hpy188I	TCNGA	3 cut(s)	812, 846, 893
Hpy188III	TCNNGA	8 cut(s)	209, 389, 460, 474, 581, 662, 713, 1060
Hpy8I	GTNNAC	2 cut(s)	233, 882
HpyAV	CCTTC	4 cut(s)	459, 686, 941, 974
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	6 cut(s)	22, 560, 622, 683, 824, 1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 290, 557
HpyF3I	CTNAG	3 cut(s)	34, 671, 795
HpySE526I	ACGT	1 cut(s)	744
HspAI	GCGC	2 cut(s)	180, 313
Ksp22I	TGATCA	2 cut(s)	117, 198
Kzo9I	GATC	5 cut(s)	117, 198, 321, 511, 703
Lsp1109I	GCAGC	5 cut(s)	164, 227, 538, 778, 1007
LweI	GCATC	3 cut(s)	280, 811, 855
MaeI	CTAG	5 cut(s)	131, 209, 279, 516, 783
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	6 cut(s)	67, 250, 264, 536, 854, 1003
MalI	GATC	5 cut(s)	119, 200, 323, 513, 705
MboI	GATC	5 cut(s)	117, 198, 321, 511, 703
MboII	GAAGA	5 cut(s)	417, 600, 698, 713, 1025
MfeI	CAATTG	2 cut(s)	258, 435
MflI	RGATCY	2 cut(s)	511, 703
MluCI	AATT	9 cut(s)	2, 56, 202, 258, 435, 688, 774, 924, 1074
MlyI	GAGTC	3 cut(s)	162, 272, 773
MnlI	CCTC	8 cut(s)	41, 154, 350, 535, 628, 680, 842, 871
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	2 cut(s)	876, 929
MspI	CCGG	1 cut(s)	1068
MspR9I	CCNGG	4 cut(s)	237, 1069, 1086, 1106
MunI	CAATTG	2 cut(s)	258, 435
MvaI	CCWGG	3 cut(s)	237, 1086, 1106
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	254, 290, 557
NciI	CCSGG	1 cut(s)	1069
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	5 cut(s)	117, 198, 321, 511, 703
NlaIV	GGNNCC	3 cut(s)	15, 901, 1083
NmuCI	GTSAC	4 cut(s)	67, 250, 264, 1003
NspI	RCATGY	3 cut(s)	272, 370, 1037
PaeI	GCATGC	1 cut(s)	1037
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	3 cut(s)	459, 712, 1059
PciI	ACATGT	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	1 cut(s)	1001
PkrI	GCNGC	5 cut(s)	179, 242, 528, 793, 1022
PleI	GAGTC	3 cut(s)	161, 271, 773
PpsI	GAGTC	3 cut(s)	161, 271, 773
PscI	ACATGT	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	235, 1084, 1104
PspGI	CCWGG	3 cut(s)	235, 1084, 1104
PspN4I	GGNNCC	3 cut(s)	15, 901, 1083
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	511, 703
PsyI	GACNNNGTC	1 cut(s)	1001
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	876, 929
SatI	GCNGC	5 cut(s)	178, 241, 527, 792, 1021
Sau3AI	GATC	5 cut(s)	117, 198, 321, 511, 703
SbfI	CCTGCAGG	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	3 cut(s)	162, 272, 773
ScrFI	CCNGG	4 cut(s)	237, 1069, 1086, 1106
SdaI	CCTGCAGG	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	280, 811, 855
SfcI	CTRYAG	1 cut(s)	20
Sfr274I	CTCGAG	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	474
SmlI	CTYRAG	3 cut(s)	140, 378, 474
SmoI	CTYRAG	3 cut(s)	140, 378, 474
SphI	GCATGC	1 cut(s)	1037
Sse8387I	CCTGCAGG	1 cut(s)	24
Sse9I	AATT	9 cut(s)	2, 56, 202, 258, 435, 688, 774, 924, 1074
SsiI	CCGC	2 cut(s)	255, 911
SspMI	CTAG	5 cut(s)	131, 209, 279, 516, 783
StyD4I	CCNGG	4 cut(s)	235, 1067, 1084, 1104
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	5 cut(s)	475, 611, 648, 863, 1011
TasI	AATT	9 cut(s)	2, 56, 202, 258, 435, 688, 774, 924, 1074
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	876, 929
Tru9I	TTAA	2 cut(s)	876, 929
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	4 cut(s)	67, 250, 264, 1003
TseI	GCWGC	5 cut(s)	177, 240, 526, 791, 1020
Tsp45I	GTSAC	4 cut(s)	67, 250, 264, 1003
TspDTI	ATGAA	2 cut(s)	786, 1076
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	1001
XapI	RAATTY	2 cut(s)	56, 924
XbaI	TCTAGA	1 cut(s)	208
XceI	RCATGY	3 cut(s)	272, 370, 1037
XhoI	CTCGAG	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	5 cut(s)	131, 209, 279, 516, 783
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.