Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020793.1

Orthogroup ID

OG0017287

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1373

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1372 bp

atgggtgcaaagaagagggcaatgggtgcaaagaagaaaggtgcatcgaggggttccgaggactctgatgaattgggacaggttcccctgcaggccatcctcttagccgatagttttactaccaaattctaccccgtcacccttgaacgccccaaagtgcttttgccattagtaaatgtccccatgatcagctacaccctagcttggctcaagtctgctggagtcaaggaggtctttgttttctgctgcgctcactccaagcaagtgatcaattatctagagacttctgggtggttttgtcaacctggctgcttcgcagtcaccgcaattgagtcacatgcttctgctagtgctggagatgctctgcgtttgatatacgagcgcgatgtgatccatggagattttgtcctcataagtggggatactgtgagcgacatgtcgcttactcaagtgcttcaagaacataaagagagaagaaagaaagataataatgctgtaatgacaattgttatcaaaccttctcaaatcatgacccaccaatctcgagtacttggcactggtgagctgtttatggcaatagatcctagcacgaagcagcttttgtgttacgaggaaaaggcagaccatgcaaaggaatctatattttgtcttgataagtcgttgcttgttggtaaatcttcgatttctctgcataatgatagagaggattgctatatcgacatctgctctcctgaagtcctcagccttcttgcagacaattttgattacgaagatcttcgtcatgatttattgaatggattgcttgacgatgacgttatgggatacaagatattcacacatgaaattgactctagttatgctgctaagattgacaacttccgaagctacgatgcagttagtaaggacatcattcagagagggagttacccctcgatgccagatgttaagtttacagaaatcggacatggcaccaagattgcggacaatactgaaattttaagttctgttattggggaagggtgttctattgggtcaaatgtttccatagaaggttcttatatattggacaatgtcaccatcgaagatggctgcaagctaaagcatgctgtggtttgtgatggagtggtcatgaagtccggggcaattttggaacctggagtagttttgtctttccaggttgttttaggagagcaatgcactgttccttcatactcaaagatatcgttaattcaacaaccaaccgaacttgcagacgattatagcaatggaattgcagaaatttcgcggcatagtaatagtaatgtaaataaaccaaatgaggttggtactggtggggctggttatgtttggtcaatttgtgatgacgagtgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0019899 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:0098772 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep Hexapep_2 NTP_transferase W2

Protein Analysis

457

Amino Acids

50.05

Weight (kDa)

4.98

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017287)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24061 FvH4_4g24260 FvH4_6g02711
rosa_chinensis	RchiOBHm_Chr4g0430791
rosa_laevigata	RLG00000006950
rosa_multiflora	Rmu_co8370567.1_g000001 Rmu_sc0002620.1_g000016 Rmu_sc0020793.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372480
rosa_rugosa	Rorug04G0245700
rosa_samantha	Rh4AG301800 Rh4BG309900
rosa_wichuraiana	Rw4G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	968
AccII	CGCG	2 cut(s)	384, 1285
AciI	CCGC	3 cut(s)	324, 980, 1285
AclWI	GGATC	2 cut(s)	385, 575
AcsI	RAATTY	3 cut(s)	125, 993, 1278
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	549, 1327
AfiI	CCNNNNNNNGG	2 cut(s)	204, 631
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	146, 458, 793, 1232
AjnI	CCWGG	3 cut(s)	304, 1153, 1173
AluBI	AGCT	6 cut(s)	192, 203, 565, 598, 885, 1096
AluI	AGCT	6 cut(s)	192, 203, 565, 598, 885, 1096
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	385, 575
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	246, 309, 595, 860, 1089
ApoI	RAATTY	3 cut(s)	125, 993, 1278
Asp700I	GAANNNNTTC	1 cut(s)	774
AspLEI	GCGC	2 cut(s)	251, 384
AsuC2I	CCSGG	1 cut(s)	1138
AsuHPI	GGTGA	4 cut(s)	130, 313, 572, 1066
AvaI	CYCGRG	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	968
BbvCI	CCTCAGC	1 cut(s)	740
BbvI	GCAGC	5 cut(s)	233, 296, 607, 847, 1076
BccI	CCATC	4 cut(s)	104, 1079, 1085, 1112
BcgI	CGANNNNNNTGC	4 cut(s)	670, 704, 1263, 1297
BciT130I	CCWGG	3 cut(s)	306, 1155, 1175
BciVI	GTATCC	2 cut(s)	415, 815
BclI	TGATCA	2 cut(s)	186, 267
BcnI	CCSGG	1 cut(s)	1138
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	5 cut(s)	200, 278, 348, 585, 852
BfmI	CTRYAG	1 cut(s)	89
BfuI	GTATCC	2 cut(s)	415, 815
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	6 cut(s)	247, 310, 596, 861, 1090, 1286
BlsI	GCNGC	6 cut(s)	248, 311, 597, 862, 1091, 1287
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	4 cut(s)	306, 1138, 1155, 1175
BmeT110I	CYCGRG	1 cut(s)	543
BmiI	GGNNCC	4 cut(s)	55, 84, 970, 1152
BmrFI	CCNGG	4 cut(s)	306, 1138, 1155, 1175
BmsI	GCATC	4 cut(s)	53, 349, 880, 924
BpmI	CTGGAG	3 cut(s)	240, 375, 1176
Bpu10I	CCTNAGC	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	194, 432
BpuMI	CCSGG	1 cut(s)	1138
BsaJI	CCNNGG	3 cut(s)	57, 394, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 631
Bse1I	ACTGG	2 cut(s)	562, 1333
Bse3DI	GCAATG	3 cut(s)	27, 1199, 1270
BseBI	CCWGG	3 cut(s)	306, 1155, 1175
BseDI	CCNNGG	3 cut(s)	57, 394, 1137
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	204, 631
BseMI	GCAATG	3 cut(s)	27, 1199, 1270
BseMII	CTCAG	1 cut(s)	754
BseNI	ACTGG	2 cut(s)	562, 1333
BseXI	GCAGC	5 cut(s)	233, 296, 607, 847, 1076
Bsh1236I	CGCG	2 cut(s)	384, 1285
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	968
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	1137
BslFI	GGGAC	2 cut(s)	90, 164
BslI	CCNNNNNNNGG	2 cut(s)	204, 631
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	90, 164
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	543
Bsp143I	GATC	5 cut(s)	186, 267, 390, 580, 772
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	3 cut(s)	324, 980, 1285
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	753
BspFNI	CGCG	2 cut(s)	384, 1285
BspHI	TCATGA	3 cut(s)	528, 781, 1128
BspLI	GGNNCC	4 cut(s)	55, 84, 970, 1152
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	2 cut(s)	385, 575
BspT107I	GGYRCC	1 cut(s)	968
BsrDI	GCAATG	3 cut(s)	27, 1199, 1270
BsrI	ACTGG	2 cut(s)	562, 1333
BssECI	CCNNGG	3 cut(s)	57, 394, 1137
BssMI	GATC	5 cut(s)	186, 267, 390, 580, 772
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	3 cut(s)	306, 1155, 1175
Bst4CI	ACNGT	2 cut(s)	427, 1201
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	2 cut(s)	26, 626
BstC8I	GCNNGC	3 cut(s)	93, 1094, 1104
BstDEI	CTNAG	3 cut(s)	103, 740, 864
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	2 cut(s)	384, 1285
BstHHI	GCGC	2 cut(s)	251, 384
BstKTI	GATC	5 cut(s)	189, 270, 393, 583, 775
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	186, 267, 390, 580, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 323, 359, 626
BstNI	CCWGG	3 cut(s)	306, 1155, 1175
BstNSI	RCATGY	3 cut(s)	341, 439, 1106
BstSCI	CCNGG	4 cut(s)	304, 1136, 1153, 1173
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	2 cut(s)	384, 1285
BstV1I	GCAGC	5 cut(s)	233, 296, 607, 847, 1076
BstX2I	RGATCY	2 cut(s)	580, 772
BstYI	RGATCY	2 cut(s)	580, 772
BsuI	GTATCC	2 cut(s)	415, 815
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	555, 1197
Cac8I	GCNNGC	3 cut(s)	93, 1094, 1104
CciI	TCATGA	3 cut(s)	528, 781, 1128
CfoI	GCGC	2 cut(s)	251, 384
Csp6I	GTAC	2 cut(s)	548, 1326
CviQI	GTAC	2 cut(s)	548, 1326
DdeI	CTNAG	3 cut(s)	103, 740, 864
DpnI	GATC	5 cut(s)	188, 269, 392, 582, 774
DpnII	GATC	5 cut(s)	186, 267, 390, 580, 772
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	1221
Eco57I	CTGAAG	1 cut(s)	753
Eco88I	CYCGRG	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	304, 1153, 1173
EcoRV	GATATC	1 cut(s)	1221
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	90, 164
FbaI	TGATCA	2 cut(s)	186, 267
Fnu4HI	GCNGC	6 cut(s)	247, 310, 596, 861, 1090, 1286
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	6 cut(s)	247, 310, 596, 861, 1090, 1286
FspBI	CTAG	5 cut(s)	200, 278, 348, 585, 852
GlaI	GCGC	2 cut(s)	250, 383
GluI	GCNGC	6 cut(s)	247, 310, 596, 861, 1090, 1286
GsuI	CTGGAG	3 cut(s)	240, 375, 1176
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	1137
HhaI	GCGC	2 cut(s)	251, 384
Hin6I	GCGC	2 cut(s)	249, 382
HinP1I	GCGC	2 cut(s)	249, 382
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	5 cut(s)	62, 222, 332, 635, 848
HpaII	CCGG	1 cut(s)	1137
HphI	GGTGA	4 cut(s)	130, 313, 572, 1066
Hpy166II	GTNNAC	2 cut(s)	302, 951
Hpy188I	TCNGA	5 cut(s)	58, 67, 881, 915, 962
Hpy188III	TCNNGA	8 cut(s)	278, 458, 529, 543, 650, 731, 782, 1129
Hpy8I	GTNNAC	2 cut(s)	302, 951
HpyAV	CCTTC	5 cut(s)	528, 755, 1010, 1043, 1215
HpyCH4III	ACNGT	2 cut(s)	427, 1201
HpyCH4IV	ACGT	1 cut(s)	813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 323, 359, 626
HpyF3I	CTNAG	3 cut(s)	103, 740, 864
HpySE526I	ACGT	1 cut(s)	813
HspAI	GCGC	2 cut(s)	249, 382
Ksp22I	TGATCA	2 cut(s)	186, 267
Kzo9I	GATC	5 cut(s)	186, 267, 390, 580, 772
Lsp1109I	GCAGC	5 cut(s)	233, 296, 607, 847, 1076
LweI	GCATC	4 cut(s)	53, 349, 880, 924
MaeI	CTAG	5 cut(s)	200, 278, 348, 585, 852
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	6 cut(s)	136, 319, 333, 605, 923, 1072
MalI	GATC	5 cut(s)	188, 269, 392, 582, 774
MboI	GATC	5 cut(s)	186, 267, 390, 580, 772
MboII	GAAGA	7 cut(s)	25, 46, 486, 669, 767, 782, 1094
MfeI	CAATTG	2 cut(s)	327, 504
MflI	RGATCY	2 cut(s)	580, 772
MlyI	GAGTC	4 cut(s)	56, 231, 341, 842
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	3 cut(s)	945, 998, 1226
MspI	CCGG	1 cut(s)	1137
MspR9I	CCNGG	4 cut(s)	306, 1138, 1155, 1175
MunI	CAATTG	2 cut(s)	327, 504
MvaI	CCWGG	3 cut(s)	306, 1155, 1175
MvnI	CGCG	2 cut(s)	384, 1285
MwoI	GCNNNNNNNGC	4 cut(s)	26, 323, 359, 626
NciI	CCSGG	1 cut(s)	1138
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	186, 267, 390, 580, 772
NlaIV	GGNNCC	4 cut(s)	55, 84, 970, 1152
NmuCI	GTSAC	4 cut(s)	136, 319, 333, 1072
NspI	RCATGY	3 cut(s)	341, 439, 1106
PaeI	GCATGC	1 cut(s)	1106
PaeR7I	CTCGAG	1 cut(s)	543
PagI	TCATGA	3 cut(s)	528, 781, 1128
PciI	ACATGT	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	635
PflFI	GACNNNGTC	1 cut(s)	1070
PkrI	GCNGC	6 cut(s)	248, 311, 597, 862, 1091, 1287
PleI	GAGTC	4 cut(s)	56, 230, 340, 842
PpsI	GAGTC	4 cut(s)	56, 230, 340, 842
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	3 cut(s)	304, 1153, 1173
PspGI	CCWGG	3 cut(s)	304, 1153, 1173
PspN4I	GGNNCC	4 cut(s)	55, 84, 970, 1152
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	580, 772
PsyI	GACNNNGTC	1 cut(s)	1070
RsaI	GTAC	2 cut(s)	549, 1327
RsaNI	GTAC	2 cut(s)	548, 1326
SaqAI	TTAA	3 cut(s)	945, 998, 1226
SatI	GCNGC	6 cut(s)	247, 310, 596, 861, 1090, 1286
Sau3AI	GATC	5 cut(s)	186, 267, 390, 580, 772
SbfI	CCTGCAGG	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	4 cut(s)	56, 231, 341, 842
ScrFI	CCNGG	4 cut(s)	306, 1138, 1155, 1175
SdaI	CCTGCAGG	1 cut(s)	93
SfaNI	GCATC	4 cut(s)	53, 349, 880, 924
SfcI	CTRYAG	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	543
SlaI	CTCGAG	1 cut(s)	543
SmlI	CTYRAG	3 cut(s)	209, 447, 543
SmoI	CTYRAG	3 cut(s)	209, 447, 543
SphI	GCATGC	1 cut(s)	1106
Sse8387I	CCTGCAGG	1 cut(s)	93
SsiI	CCGC	3 cut(s)	324, 980, 1285
SspMI	CTAG	5 cut(s)	200, 278, 348, 585, 852
StyD4I	CCNGG	4 cut(s)	304, 1136, 1153, 1173
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	427, 1201
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	6 cut(s)	47, 544, 680, 717, 932, 1080
TatI	WGTACW	1 cut(s)	547
TauI	GCSGC	1 cut(s)	1288
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	3 cut(s)	945, 998, 1226
Tru9I	TTAA	3 cut(s)	945, 998, 1226
TscAI	CASTG	2 cut(s)	562, 1204
TseFI	GTSAC	4 cut(s)	136, 319, 333, 1072
TseI	GCWGC	5 cut(s)	246, 309, 595, 860, 1089
Tsp45I	GTSAC	4 cut(s)	136, 319, 333, 1072
TspDTI	ATGAA	4 cut(s)	84, 855, 1145, 1197
TspRI	CASTG	2 cut(s)	562, 1204
Tth111I	GACNNNGTC	1 cut(s)	1070
XapI	RAATTY	3 cut(s)	125, 993, 1278
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	3 cut(s)	341, 439, 1106
XhoI	CTCGAG	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	5 cut(s)	200, 278, 348, 585, 852
ZrmI	AGTACT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.