Rorug04G0245700

Translation initiation factor eIF-2B subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
41560899 .. 41570079
9181 bp
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UTR
Exon/CDS
Intron
Rorug04G0245700.1

Sequence Viewer

Length: 201 bp
ATGCAACCGACCAAGTTTGGGAGGTTAGATTATGTTAAAAGATCTACTCGGCTGGACAGGTACCATTGCCCAGATCGTGAGAACCCCGCTGAGATTTTAGCTGATCTTATATCTGTTGACTACAGCTTTGCTGAAAGTGTCTACTCCTCTCAGAAAAGAAAGATGCTCTTGTTGAATCATTTTCACAACAATCATCACTAG

Protein Analysis

66

Amino Acids

7.89

Weight (kDa)

8.89

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 87
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 2 cut(s) 101, 126
AluI AGCT 2 cut(s) 101, 126
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp718I GGTACC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 60
BfaI CTAG 1 cut(s) 199
BfmI CTRYAG 1 cut(s) 121
BglII AGATCT 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 81, 164
BseRI GAGGAG 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 18
Bsp143I GATC 3 cut(s) 41, 73, 103
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 82, 163
BspLI GGNNCC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 64
BssMI GATC 3 cut(s) 41, 73, 103
BstDEI CTNAG 2 cut(s) 90, 150
BstKTI GATC 3 cut(s) 44, 76, 106
BstMBI GATC 3 cut(s) 41, 73, 103
BstSFI CTRYAG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
Csp6I GTAC 1 cut(s) 61
CviJI RGCY 3 cut(s) 52, 101, 126
CviKI_1 RGCY 3 cut(s) 52, 101, 126
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 90, 150
DpnI GATC 3 cut(s) 43, 75, 105
DpnII GATC 3 cut(s) 41, 73, 103
FaiI YATR 2 cut(s) 33, 110
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FauI CCCGC 1 cut(s) 94
FblI GTMKAC 1 cut(s) 141
FspBI CTAG 1 cut(s) 199
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 118, 142
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 2 cut(s) 118, 142
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 90, 150
KpnI GGTACC 1 cut(s) 64
Kzo9I GATC 3 cut(s) 41, 73, 103
LpnPI CCDG 3 cut(s) 38, 43, 84
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 199
MalI GATC 3 cut(s) 43, 75, 105
MboI GATC 3 cut(s) 41, 73, 103
MflI RGATCY 1 cut(s) 41
MnlI CCTC 2 cut(s) 15, 157
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 89
NdeII GATC 3 cut(s) 41, 73, 103
NlaIV GGNNCC 1 cut(s) 62
NmeAIII GCCGAG 1 cut(s) 28
PfeI GAWTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 62
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 3 cut(s) 41, 73, 103
SetI ASST 4 cut(s) 26, 62, 103, 128
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 121
SgeI CNNG 8 cut(s) 25, 60, 65, 70, 83, 89, 98, 181
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 199
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.