Rh4BG309700

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000168
Physical Location & Seq
Forward (+)
47823097 .. 47823609
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG309700.1

Sequence Viewer

Length: 513 bp
ATGGTAAAGGGTTTGGCAGTAGATATTGGAAAGGCTGCTTTCAAAACTACACTCAATTTGCTGTCGACAACTATTTTCTCGGTGGATTTGGCTGATGACACGAGTAGTGGTAGTGAGATGACTAGAGAATTCAAGAAGATTGTTAATGGTGTCATGGAAGAGGCTGGGAAGCCGAATTTGGGGGACTATTTTCCAGTGCTTAGGAAGATTGATCCCCAAGGCATAAGGCGGCGCTTTATGAATTACTTCAACAAGATGTTAGGCTTGATTGAATCAGGGATCAGTCAAAGGTTGGAATGTAGAAAAGGGGATGATTATGTAACAAGTAATGATATGTTGGATACTCTTATAAACCTCGGTGAAGAGAAAAATGAGGTGGATTTGAAGAACTCCGAAGTTGTTGAACATTTGTTTGTGGTTAGTTTCTACTCTCTATCTACTACTTTCTGTTCTTCTTGGATACTTACTTCAATAATGCTAGGCTTAATTACAAATTATTTGTCTATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

5.25

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 159 4.1e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AccI GTMKAC 1 cut(s) 65
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 206, 287
AcsI RAATTY 2 cut(s) 128, 175
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 7 cut(s) 43, 133, 250, 272, 385, 404, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AlwI GGATC 2 cut(s) 206, 287
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 128, 175
ArsI GACNNNNNNTTYG 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 371
BauI CACGAG 1 cut(s) 100
BbvI GCAGC 1 cut(s) 22
BciVI GTATCC 2 cut(s) 334, 453
BfaI CTAG 2 cut(s) 123, 479
BfoI RGCGCY 1 cut(s) 235
BfuI GTATCC 2 cut(s) 334, 453
BisI GCNGC 2 cut(s) 36, 230
BlsI GCNGC 2 cut(s) 37, 231
Bpu10I CCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 217, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 217, 355
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 211, 279
BspACI CCGC 1 cut(s) 229
BspPI GGATC 2 cut(s) 206, 287
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 217, 355
BssMI GATC 2 cut(s) 211, 279
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 153, 357
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 214, 282
BstMBI GATC 2 cut(s) 211, 279
BstV1I GCAGC 1 cut(s) 22
BsuI GTATCC 2 cut(s) 334, 453
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 234
CviAII CATG 1 cut(s) 154
CviJI RGCY 6 cut(s) 35, 92, 164, 172, 264, 483
CviKI_1 RGCY 6 cut(s) 35, 92, 164, 172, 264, 483
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 213, 281
DpnII GATC 2 cut(s) 211, 279
Eam1104I CTCTTC 2 cut(s) 153, 357
EarI CTCTTC 2 cut(s) 153, 357
Eco130I CCWWGG 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 157
FaiI YATR 6 cut(s) 155, 224, 239, 318, 335, 350
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 36, 230
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 36, 230
FspBI CTAG 2 cut(s) 123, 479
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 36, 230
GsaI CCCAGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 235
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 272
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 211, 279
LpnPI CCDG 3 cut(s) 150, 207, 261
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 2 cut(s) 123, 479
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 213, 281
MboI GATC 2 cut(s) 211, 279
MboII GAAGA 6 cut(s) 148, 170, 217, 374, 397, 444
MluCI AATT 6 cut(s) 55, 128, 175, 241, 486, 493
MmeI TCCRAC 2 cut(s) 273, 318
MnlI CCTC 3 cut(s) 154, 365, 367
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 3 cut(s) 144, 485, 507
NdeII GATC 2 cut(s) 211, 279
NlaIII CATG 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 37, 231
PsiI TTATAA 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 164
SalI GTCGAC 1 cut(s) 64
SaqAI TTAA 3 cut(s) 144, 485, 507
SatI GCNGC 2 cut(s) 36, 230
Sau3AI GATC 2 cut(s) 211, 279
SetI ASST 3 cut(s) 293, 357, 378
Sse9I AATT 6 cut(s) 55, 128, 175, 241, 486, 493
SsiI CCGC 1 cut(s) 229
SspMI CTAG 2 cut(s) 123, 479
StyI CCWWGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 65
TasI AATT 6 cut(s) 55, 128, 175, 241, 486, 493
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 144, 485, 507
Tru9I TTAA 3 cut(s) 144, 485, 507
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 1 cut(s) 201
XapI RAATTY 2 cut(s) 128, 175
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 2 cut(s) 123, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.