pycom13g16060

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
11830746 .. 11831647
902 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16060.2

Sequence Viewer

Length: 771 bp
ATGCGGAAGATGTTTGACCTCTTTGACCGATTGATGATTCAGCGGTTTGAATCAAGGAAAAAGCTTGATTATATCATGAGTAATGATATGTTAGATACCTTAATAAACATTAGTGAAGAGAAAAATGAGAATATGGACATGGATGAAACTCAACTTCTGTTCCTGGTTCTATTTGCTGCGGGAACAGATACAACGTCATCCACATTGGAATGGGCAATGGCTGAGCTACTCCGCAACCCGGAAAAATTGTCCAAAGCTCAAGCGGAGCTGAAGCAGATCATCGGAAAAGGAAAACCGGTTGGGGAATCCGACACAGCTAAACTCCCTTATTTACAAGCAATACTCAAAGAGACCTTCCGGTTGCACCCAGCAGTGCCTTTACTACTTCCCCGAGAAGCCGATGCAGACGTAGAAATCTGCGGGTACACTGTACCAAAGGGTGCACAAGTGTTTGTCAATGCATGGGCCATCGGCAGAGACCCCGACATTTGGGACAACCCTGACTCATTCATCCCAGAGAGGTTTTTGGGATCGGAAATTGATGTTACTGGCAAGAACTTTGAGCTTATTCCGTTTGGTGGTGGGAGAAGAATATATCCTGGCTTGCCATTGGCAGTGAGAATGGTGAACTTAATGTTGGATTCACTTATTAACTACTTTGACAACTGGAAGCTTGAAGACGGAATTGCACCGGAGACCATGGACATGCATGAGAAGTTTGGCATCACCTTACAAAAAGCTCAGCCCCTCAGAGCTGTGCCCATGTTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

29.1

Weight (kDa)

4.85

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 4, 43, 179, 232, 263, 420
AclWI GGATC 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 2 cut(s) 425, 432
AfiI CCNNNNNNNGG 3 cut(s) 238, 489, 578
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 50, 677
AjnI CCWGG 2 cut(s) 162, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 9 cut(s) 64, 226, 257, 268, 317, 565, 673, 740, 755
AluI AGCT 9 cut(s) 64, 226, 257, 268, 317, 565, 673, 740, 755
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 344, 471, 689
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 1 cut(s) 538
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 1 cut(s) 465
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 637, 718
AvaI CYCGRG 1 cut(s) 390
BaeGI GKGCMC 2 cut(s) 445, 762
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 164, 600
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 344, 471, 689
BisI GCNGC 1 cut(s) 177
BlpI GCTNAGC 2 cut(s) 222, 741
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 3 cut(s) 164, 239, 600
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 3 cut(s) 164, 239, 600
BmsI GCATC 2 cut(s) 391, 732
BpiI GAAGAC 1 cut(s) 684
Bpu1102I GCTNAGC 2 cut(s) 222, 741
BpuEI CTTGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 3 cut(s) 344, 471, 689
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 3 cut(s) 295, 357, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 489, 578
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 553, 671
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 164, 600
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 3 cut(s) 148, 197, 510
BseLI CCNNNNNNNGG 3 cut(s) 238, 489, 578
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 213, 755, 763
BseNI ACTGG 2 cut(s) 553, 671
BseSI GKGCMC 2 cut(s) 445, 762
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 467
BshTI ACCGGT 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 4 cut(s) 239, 296, 358, 692
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 3 cut(s) 238, 489, 578
BsmAI GTCTC 3 cut(s) 344, 471, 689
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 1 cut(s) 467
Bso31I GGTCTC 3 cut(s) 344, 471, 689
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 445, 762
Bsp143I GATC 2 cut(s) 276, 530
Bsp1720I GCTNAGC 2 cut(s) 222, 741
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 6 cut(s) 4, 43, 179, 232, 263, 420
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 3 cut(s) 214, 754, 762
BspHI TCATGA 1 cut(s) 75
BspPI GGATC 1 cut(s) 538
BspTNI GGTCTC 3 cut(s) 344, 471, 689
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 553, 671
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 2 cut(s) 276, 530
BssT1I CCWWGG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 164, 600
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 222, 741, 749
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 3 cut(s) 148, 197, 510
BstKTI GATC 2 cut(s) 279, 533
BstMAI GTCTC 3 cut(s) 344, 471, 689
BstMBI GATC 2 cut(s) 276, 530
BstNI CCWGG 2 cut(s) 164, 600
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 3 cut(s) 162, 237, 598
BstSLI GKGCMC 2 cut(s) 445, 762
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 684
BsuRI GGCC 1 cut(s) 467
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 3 cut(s) 148, 197, 510
BtsI GCAGTG 2 cut(s) 378, 621
BtsIMutI CAGTG 3 cut(s) 378, 426, 621
Cac8I GCNNGC 1 cut(s) 605
CciI TCATGA 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 2 cut(s) 424, 431
CspAI ACCGGT 1 cut(s) 295
CviAII CATG 7 cut(s) 76, 139, 462, 700, 706, 710, 763
CviQI GTAC 2 cut(s) 424, 431
DdeI CTNAG 3 cut(s) 222, 741, 749
DpnI GATC 2 cut(s) 278, 532
DpnII GATC 2 cut(s) 276, 530
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 699
Eco31I GGTCTC 3 cut(s) 344, 471, 689
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 162, 598
EcoT14I CCWWGG 1 cut(s) 699
EcoT22I ATGCAT 2 cut(s) 463, 711
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 7 cut(s) 79, 142, 465, 703, 709, 713, 766
FaqI GGGAC 1 cut(s) 506
FatI CATG 7 cut(s) 75, 138, 461, 699, 705, 709, 762
FauI CCCGC 2 cut(s) 172, 413
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 3 cut(s) 155, 184, 497
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 371
HaeIII GGCC 1 cut(s) 467
HapII CCGG 4 cut(s) 239, 296, 358, 692
Hin1II CATG 7 cut(s) 79, 142, 465, 703, 709, 713, 766
HindIII AAGCTT 2 cut(s) 62, 671
HinfI GANTC 5 cut(s) 37, 50, 305, 503, 641
HpaII CCGG 4 cut(s) 239, 296, 358, 692
HphI GGTGA 2 cut(s) 637, 718
Hpy166II GTNNAC 3 cut(s) 426, 443, 628
Hpy188I TCNGA 4 cut(s) 284, 310, 535, 752
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 3 cut(s) 426, 443, 628
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 2 cut(s) 194, 408
HpyCH4V TGCA 6 cut(s) 364, 404, 443, 461, 689, 709
HpyF3I CTNAG 3 cut(s) 222, 741, 749
HpySE526I ACGT 2 cut(s) 194, 408
Hsp92II CATG 7 cut(s) 79, 142, 465, 703, 709, 713, 766
Kzo9I GATC 2 cut(s) 276, 530
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 391, 732
MaeII ACGT 2 cut(s) 194, 408
MaeIII GTNAC 1 cut(s) 544
MalI GATC 2 cut(s) 278, 532
MboI GATC 2 cut(s) 276, 530
MboII GAAGA 4 cut(s) 19, 128, 600, 689
MhlI GDGCHC 2 cut(s) 445, 762
MluCI AATT 3 cut(s) 245, 537, 684
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 333, 618
MnlI CCTC 3 cut(s) 29, 513, 758
Mph1103I ATGCAT 2 cut(s) 463, 711
MseI TTAA 3 cut(s) 101, 632, 651
MslI CAYNNNNRTG 2 cut(s) 208, 704
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 239, 296, 358, 692
MspR9I CCNGG 3 cut(s) 164, 239, 600
MvaI CCWGG 2 cut(s) 164, 600
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 699
NdeII GATC 2 cut(s) 276, 530
NlaIII CATG 7 cut(s) 79, 142, 465, 703, 709, 713, 766
NsiI ATGCAT 2 cut(s) 463, 711
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 75
PfeI GAWTC 4 cut(s) 37, 50, 305, 641
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 162, 598
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 2 cut(s) 162, 598
PspPI GGNCC 1 cut(s) 465
RsaI GTAC 2 cut(s) 425, 432
RsaNI GTAC 2 cut(s) 424, 431
RseI CAYNNNNRTG 2 cut(s) 208, 704
SaqAI TTAA 3 cut(s) 101, 632, 651
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 276, 530
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 3 cut(s) 164, 239, 600
SduI GDGCHC 2 cut(s) 445, 762
SfaNI GCATC 2 cut(s) 391, 732
SmiMI CAYNNNNRTG 2 cut(s) 208, 704
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 245, 537, 684
SsiI CCGC 6 cut(s) 4, 43, 179, 232, 263, 420
StyD4I CCNGG 3 cut(s) 162, 237, 598
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 2 cut(s) 197, 411
TaqII GACCGA 1 cut(s) 42
TasI AATT 3 cut(s) 245, 537, 684
TfiI GAWTC 4 cut(s) 37, 50, 305, 641
Tru1I TTAA 3 cut(s) 101, 632, 651
Tru9I TTAA 3 cut(s) 101, 632, 651
TscAI CASTG 3 cut(s) 378, 433, 621
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 159, 499
TspGWI ACGGA 2 cut(s) 561, 696
TspRI CASTG 3 cut(s) 378, 433, 621
VneI GTGCAC 1 cut(s) 441
XceI RCATGY 1 cut(s) 709
Zsp2I ATGCAT 2 cut(s) 463, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.