Rh4AG302100

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000168
Physical Location & Seq
Reverse (-)
61507331 .. 61515753
8423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG302100.1

Sequence Viewer

Length: 1035 bp
ATGGATGATGTCAATGAAAGCATAAGGGCCGGTGAGGCAGTAGATGTCGGAAGGGCTGCTTTTACAACCGCACTCAATTTGTTGTCGCAGACTGTCTTCTCTGTGGATTTAGCTGACCCGAGTTGCCAGACAGCTAGGGAGTTCAAGGAGACTTTTTGGGGTCTGATGGAAGAGGTAGGGAAACCAAACTTGGTGGACTATTTTCCTTTGCTAAGGAAGCTTGACCCACAAGGCATAAACCGGCGCGCAACGAACTACTTCCGGAAGACGATACTCATCTTTGATCCAATGATCCATCAAAGGTTGGAATCAAGAAAAGGGGGCAATTATATCACAACTAATGATATGTTGGATACACTTTTAAACATCAGTGAAGTGAAAAGAGAGGATATGGATATTCCGGAAACCCAACATTTGTTTGTGGACCTGTTTGTTGCTGGCACAGAGACAACTTCAGCCACAGTGGAATGGGCAATGGCTGAGCTATTATGCAACCCAGAAGTCCTCTCCAAAGCTCAAGCGGAACTCAATCAAGTGATTGGAAAAGGGAAGCTAGTTGAGGAATCAGACATTGTTCGACTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGGCTTCACCCAGTATTTCCATTTCTACTCCCCCGAAAAGCAGGAGCTAACACAGAAATTGGAGGGTATGTAATCCCGAAGGATGCACAAGTTCTAATCAATGTTTGGGCCATAGGCAGAGACCCCCTTACTTGGGAAAACCCAAACTTGTTTAAGCCAGAGAGGTTCTTGGGATTAGACAACCAAATTGATGTTACGGGAAAAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGAAGAATATGTCCTGGACTACCACTGGCAATAAGAATGTTACACTTGATGTTGGGTTCACTACTTAACAACTTTGACTGGAAGCTTGAAAATGGAGTCTTCCCCGATACTATGAACATGGAAGAGAAGTTTGGCCTCACCTTACAAAAGGCTCAGCCTCTCAGAGCTGTGCCCAAGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

344

Amino Acids

38.79

Weight (kDa)

5.35

Isoelectric Point (pI)

25.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 333 7.5e-79 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 842
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 2 cut(s) 261, 400
AciI CCGC 2 cut(s) 69, 521
AclWI GGATC 2 cut(s) 278, 286
AcuI CTGAAG 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 747, 748, 842
AgsI TTSAA 2 cut(s) 145, 938
AjnI CCWGG 1 cut(s) 862
AjuI GAANNNNNNNTTGG 4 cut(s) 173, 205, 963, 995
Alw26I GTCTC 3 cut(s) 143, 440, 729
AlwI GGATC 2 cut(s) 278, 286
Ama87I CYCGRG 1 cut(s) 118
Aor13HI TCCGGA 2 cut(s) 261, 400
AoxI GGCC 3 cut(s) 27, 723, 982
ApeKI GCWGC 1 cut(s) 56
Asp700I GAANNNNTTC 2 cut(s) 257, 612
AspLEI GCGC 2 cut(s) 246, 248
AspS9I GGNCC 3 cut(s) 27, 424, 723
AsuHPI GGTGA 3 cut(s) 44, 614, 979
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 1023
BbsI GAAGAC 3 cut(s) 88, 272, 940
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 160, 303
BciT130I CCWGG 1 cut(s) 864
BciVI GTATCC 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 143, 440, 729
BfaI CTAG 2 cut(s) 135, 554
BfuI GTATCC 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 57
BlpI GCTNAGC 2 cut(s) 480, 1002
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 864
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 27, 424, 723
BmrFI CCNGG 1 cut(s) 864
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 688
BmuI ACTGGG 1 cut(s) 620
BpiI GAAGAC 3 cut(s) 88, 272, 940
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 2 cut(s) 480, 1002
BpuEI CTTGAG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 729
BsaWI WCCGGW 2 cut(s) 261, 400
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 3 cut(s) 747, 748, 842
Bse118I RCCGGY 2 cut(s) 29, 240
Bse1I ACTGG 3 cut(s) 626, 879, 932
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 275
BseAI TCCGGA 2 cut(s) 261, 400
BseBI CCWGG 1 cut(s) 864
BseGI GGATG 2 cut(s) 10, 703
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 3 cut(s) 747, 748, 842
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 471, 1016, 1024
BseNI ACTGG 3 cut(s) 626, 879, 932
BsePI GCGCGC 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 1023
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 29, 725, 984
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 4 cut(s) 30, 241, 262, 401
BslI CCNNNNNNNGG 3 cut(s) 747, 748, 842
BsmAI GTCTC 3 cut(s) 143, 440, 729
BsnI GGCC 3 cut(s) 29, 725, 984
Bso31I GGTCTC 1 cut(s) 729
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 1023
Bsp13I TCCGGA 2 cut(s) 261, 400
Bsp143I GATC 2 cut(s) 283, 291
Bsp1720I GCTNAGC 2 cut(s) 480, 1002
BspACI CCGC 2 cut(s) 69, 521
BspANI GGCC 3 cut(s) 29, 725, 984
BspCNI CTCAG 3 cut(s) 472, 1015, 1023
BspEI TCCGGA 2 cut(s) 261, 400
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 2 cut(s) 278, 286
BspTNI GGTCTC 1 cut(s) 729
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 2 cut(s) 29, 240
BsrI ACTGG 3 cut(s) 626, 879, 932
BssAI RCCGGY 2 cut(s) 29, 240
BssHII GCGCGC 1 cut(s) 244
BssMI GATC 2 cut(s) 283, 291
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 2 cut(s) 94, 463
Bst6I CTCTTC 2 cut(s) 165, 966
BstC8I GCNNGC 2 cut(s) 246, 439
BstDEI CTNAG 4 cut(s) 212, 480, 1002, 1010
BstF5I GGATG 2 cut(s) 10, 703
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 2 cut(s) 246, 248
BstKTI GATC 2 cut(s) 286, 294
BstMAI GTCTC 3 cut(s) 143, 440, 729
BstMBI GATC 2 cut(s) 283, 291
BstMWI GCNNNNNNNGC 2 cut(s) 35, 217
BstNI CCWGG 1 cut(s) 864
BstSCI CCNGG 1 cut(s) 862
BstSLI GKGCMC 1 cut(s) 1023
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 3 cut(s) 88, 272, 940
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 3 cut(s) 29, 725, 984
BtsCI GGATG 2 cut(s) 10, 703
BtsIMutI CAGTG 3 cut(s) 376, 468, 872
Cac8I GCNNGC 2 cut(s) 246, 439
CfoI GCGC 2 cut(s) 246, 248
Cfr10I RCCGGY 2 cut(s) 29, 240
Cfr13I GGNCC 3 cut(s) 27, 424, 723
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 1 cut(s) 967
DdeI CTNAG 4 cut(s) 212, 480, 1002, 1010
DpnI GATC 2 cut(s) 285, 293
DpnII GATC 2 cut(s) 283, 291
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 165, 966
EarI CTCTTC 2 cut(s) 165, 966
Eco31I GGTCTC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 862
FaeI CATG 1 cut(s) 970
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 1 cut(s) 966
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 17, 710
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 135, 554
GlaI GCGC 2 cut(s) 245, 247
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 29, 725, 984
HapII CCGG 4 cut(s) 30, 241, 262, 401
HhaI GCGC 2 cut(s) 246, 248
Hin1II CATG 1 cut(s) 970
Hin6I GCGC 2 cut(s) 244, 246
HinP1I GCGC 2 cut(s) 244, 246
HindIII AAGCTT 2 cut(s) 218, 932
HinfI GANTC 4 cut(s) 308, 563, 579, 945
HpaII CCGG 4 cut(s) 30, 241, 262, 401
HphI GGTGA 3 cut(s) 44, 614, 979
Hpy166II GTNNAC 3 cut(s) 196, 424, 908
Hpy188I TCNGA 4 cut(s) 50, 165, 568, 1013
Hpy188III TCNNGA 4 cut(s) 262, 312, 401, 691
Hpy8I GTNNAC 3 cut(s) 196, 424, 908
HpyAV CCTTC 2 cut(s) 45, 688
HpyCH4III ACNGT 2 cut(s) 94, 463
HpyCH4V TGCA 2 cut(s) 492, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 217
HpyF3I CTNAG 4 cut(s) 212, 480, 1002, 1010
Hsp92II CATG 1 cut(s) 970
HspAI GCGC 2 cut(s) 244, 246
Kpn2I TCCGGA 2 cut(s) 261, 400
Kzo9I GATC 2 cut(s) 283, 291
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 688
MaeI CTAG 2 cut(s) 135, 554
MaeIII GTNAC 2 cut(s) 808, 888
MalI GATC 2 cut(s) 285, 293
MboI GATC 2 cut(s) 283, 291
MboII GAAGA 6 cut(s) 88, 182, 277, 864, 940, 983
MhlI GDGCHC 1 cut(s) 1023
MluCI AATT 4 cut(s) 76, 325, 672, 801
MlyI GAGTC 2 cut(s) 573, 954
MmeI TCCRAC 3 cut(s) 28, 285, 330
MnlI CCTC 9 cut(s) 28, 166, 379, 515, 553, 671, 771, 995, 1017
MroI TCCGGA 2 cut(s) 261, 400
MroXI GAANNNNTTC 2 cut(s) 257, 612
MseI TTAA 3 cut(s) 362, 768, 915
MspI CCGG 4 cut(s) 30, 241, 262, 401
MspR9I CCNGG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 864
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 35, 217
NdeII GATC 2 cut(s) 283, 291
NlaIII CATG 1 cut(s) 970
PauI GCGCGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 257, 612
PfeI GAWTC 2 cut(s) 308, 563
PflMI CCANNNNNTGG 1 cut(s) 842
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 573, 953
PpsI GAGTC 2 cut(s) 573, 953
Psp6I CCWGG 1 cut(s) 862
PspGI CCWGG 1 cut(s) 862
PspPI GGNCC 3 cut(s) 27, 424, 723
PteI GCGCGC 1 cut(s) 244
SaqAI TTAA 3 cut(s) 362, 768, 915
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 283, 291
Sau96I GGNCC 3 cut(s) 27, 424, 723
SchI GAGTC 2 cut(s) 573, 954
ScrFI CCNGG 1 cut(s) 864
SduI GDGCHC 1 cut(s) 1023
SfaNI GCATC 1 cut(s) 688
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 4 cut(s) 76, 325, 672, 801
SsiI CCGC 2 cut(s) 69, 521
SspMI CTAG 2 cut(s) 135, 554
StyD4I CCNGG 1 cut(s) 862
TaaI ACNGT 2 cut(s) 94, 463
TaqI TCGA 1 cut(s) 577
TasI AATT 4 cut(s) 76, 325, 672, 801
TfiI GAWTC 2 cut(s) 308, 563
Tru1I TTAA 3 cut(s) 362, 768, 915
Tru9I TTAA 3 cut(s) 362, 768, 915
TscAI CASTG 3 cut(s) 376, 468, 879
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 30, 977
TspRI CASTG 3 cut(s) 376, 468, 879
Van91I CCANNNNNTGG 1 cut(s) 842
VpaK11BI GGWCC 1 cut(s) 424
XmnI GAANNNNTTC 2 cut(s) 257, 612
XspI CTAG 2 cut(s) 135, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.