Rh4CG326400

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000168
Physical Location & Seq
Forward (+)
58737373 .. 58749563
12191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG326400.1

Sequence Viewer

Length: 390 bp
ATGGATCTAGCTGAAACTAGCCCGGGCAGTAGTGATACGGCTAGAGAGTTCAAGGAGATTGTTTGGGGTATAATGGAAGAGGCTGGAAAGCTGAATTTGGGGGACTACTTTCCTGTGCGTAGGAAGCTTGACCCCCAAGGCATAAGGCGGCGCTTCGCCAATTACTTCATGAGGATGTTAGGCTTCATTGGATCTATTGTCAATGAAAGGTTGGAATCCAGAAAAGCGCATGATTATGTCACAAGTAATGATATGCTGGATACCCTTATAAACATCAGTCAAGAGAAAAATGAGGAGGATATGAACAACTCCCAAGTTGTTGACCATTTGTTTCCGTCTGCTGAAGTGATCAATCACCTTAAAAGCTATATTGCAGCACGGTCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

129

Amino Acids

14.86

Weight (kDa)

5.62

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AciI CCGC 1 cut(s) 148
AclWI GGATC 2 cut(s) 12, 199
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 363
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 4 cut(s) 11, 91, 127, 366
AluI AGCT 4 cut(s) 11, 91, 127, 366
AlwI GGATC 2 cut(s) 12, 199
Ama87I CYCGRG 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 2 cut(s) 153, 229
AsuC2I CCSGG 2 cut(s) 23, 24
AsuHPI GGTGA 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 22
BbvI GCAGC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 54
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 2 cut(s) 23, 24
BfaI CTAG 3 cut(s) 8, 18, 42
BfoI RGCGCY 1 cut(s) 154
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 2 cut(s) 149, 375
BlsI GCNGC 2 cut(s) 150, 376
Bme1390I CCNGG 2 cut(s) 23, 24
BmeT110I CYCGRG 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 23, 24
BpuMI CCSGG 2 cut(s) 23, 24
BsaJI CCNNGG 2 cut(s) 22, 136
BseDI CCNNGG 2 cut(s) 22, 136
BseGI GGATG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 3 cut(s) 4, 191, 348
BspACI CCGC 1 cut(s) 148
BspHI TCATGA 1 cut(s) 168
BspPI GGATC 2 cut(s) 12, 199
BssECI CCNNGG 2 cut(s) 22, 136
BssMI GATC 3 cut(s) 4, 191, 348
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 229
BstKTI GATC 3 cut(s) 7, 194, 351
BstMBI GATC 3 cut(s) 4, 191, 348
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 21, 22
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 4, 191
BstYI RGATCY 2 cut(s) 4, 191
BsuI GTATCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 180
CciI TCATGA 1 cut(s) 168
CfoI GCGC 2 cut(s) 153, 229
Cfr9I CCCGGG 1 cut(s) 22
CviAII CATG 2 cut(s) 169, 230
CviJI RGCY 8 cut(s) 11, 21, 41, 83, 91, 127, 183, 366
CviKI_1 RGCY 8 cut(s) 11, 21, 41, 83, 91, 127, 183, 366
DpnI GATC 3 cut(s) 6, 193, 350
DpnII GATC 3 cut(s) 4, 191, 348
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 172, 233
FaiI YATR 9 cut(s) 71, 143, 170, 231, 237, 254, 269, 302, 369
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 168, 229
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 149, 375
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 149, 375
FspBI CTAG 3 cut(s) 8, 18, 42
GlaI GCGC 2 cut(s) 152, 228
GluI GCNGC 2 cut(s) 149, 375
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 1 cut(s) 23
HhaI GCGC 2 cut(s) 153, 229
Hin1II CATG 2 cut(s) 172, 233
Hin6I GCGC 2 cut(s) 151, 227
HinP1I GCGC 2 cut(s) 151, 227
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 169, 219, 281
Hpy8I GTNNAC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 172, 233
HspAI GCGC 2 cut(s) 151, 227
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 4, 191, 348
LpnPI CCDG 5 cut(s) 36, 69, 126, 232, 242
Lsp1109I GCAGC 1 cut(s) 386
MaeI CTAG 3 cut(s) 8, 18, 42
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 6, 193, 350
MboI GATC 3 cut(s) 4, 191, 348
MboII GAAGA 1 cut(s) 89
MflI RGATCY 2 cut(s) 4, 191
MluCI AATT 2 cut(s) 94, 160
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 73, 165, 286, 289
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 173, 234
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 23, 24
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 2 cut(s) 23, 24
NdeII GATC 3 cut(s) 4, 191, 348
NlaIII CATG 2 cut(s) 172, 233
NmuCI GTSAC 1 cut(s) 238
PagI TCATGA 1 cut(s) 168
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 150, 376
PsiI TTATAA 1 cut(s) 269
PsuI RGATCY 2 cut(s) 4, 191
RseI CAYNNNNRTG 2 cut(s) 173, 234
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 149, 375
Sau3AI GATC 3 cut(s) 4, 191, 348
ScrFI CCNGG 2 cut(s) 23, 24
SetI ASST 6 cut(s) 13, 93, 129, 212, 360, 368
SmaI CCCGGG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 173, 234
SrfI GCCCGGGC 1 cut(s) 24
Sse9I AATT 2 cut(s) 94, 160
SsiI CCGC 1 cut(s) 148
SspMI CTAG 3 cut(s) 8, 18, 42
StyD4I CCNGG 2 cut(s) 21, 22
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 381
TasI AATT 2 cut(s) 94, 160
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 157, 175, 219, 317
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 22
XspI CTAG 3 cut(s) 8, 18, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.