Rroxscaffold_4G00308920

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000168
Physical Location & Seq
Reverse (-)
30522127 .. 30525510
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00308920.1

Sequence Viewer

Length: 1056 bp
ATGAGGGCGGTGAGGCAAGAGATATCGAAGGCCTACTTTCTCAACCACACTCAATCTATTGTCGTAGACTATTTTCTCTATGAATTTAGCCGACTTGGAGTAGCGAGACAACTAGGGAGTTCAAGGAGACTCGTTTGGGGTATGATGGAAGAGATAGGGAAACCAAACTTGGGGGATTACTTTCCTTTTCTTAGCAAGCTTGATCCACAAGGCATAAGGCGGCGCTTGACCTATCACTTCCAGATTACGGTAGATATGTTTGATCGGATGATTCATCAAAGGTTGGAATCAAGAAAACGGGATGAATATATCTCAACTAATGATATGTTGGATACACTTGTGAACATCGGTGAAGAGAAAAGGGAGGATTTGGACATGCTCAAAACTCAACATTTATTTTTGATCATAGATAGAACCACCTTAAACTTGAAATTTGAGGGTGTTTTTATTTTTAGCGATAGTTTTAGGGCTGGGAATTCCAAACCGAGATCCCGAAACCGATCCCGTCCGATCCGAGCCGAAACCGATCGGGTCGGTATGATGAGTCGTTTCGCCGGAATCCCGATCCGAACCGTACCGAAACTTCGCAAACGGGTCGGCACCGGTATGGATGAAAAGCATACCGAATTGACGGAACCGAGCCGAAACCGCATCATGACGGCGATTCCCGTGGCGGTTCCGTCTCGGATTGAGTTGCCGGGATTCGTGGTGAGCCATGGGTATGGGTTGACGGAGACGGCGGGTGGTGGTGTCCCGCGCATGGTCGATCCAACTCGAGAAGCAAAGCGAAAAACAGCTCTTCATCTCCATCTCGCGATCGATCTATTTGCTACTGGCACAGACACAAGTTCAGCCACAATGGAATGGGCAATGGTTGAGCTGCTACGCAACCCAAAAATACTTTCAAAAGCTCAAGCAGAACTCAGTCAAGTGATTGGAAAAGGAAAACTAGTTGATGAATCAGACATTGCACGGCTCCCTTACTTACAAGCAATAATAAAAGAAACATTTCGGTTACACCCAACAGTTCCATTGTTACTTCCCCTGAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

351

Amino Acids

40.11

Weight (kDa)

9.89

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 271 - 348 1.8e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 66
AccII CGCG 2 cut(s) 757, 815
AciI CCGC 6 cut(s) 8, 220, 649, 674, 740, 755
AclWI GGATC 6 cut(s) 197, 483, 495, 505, 559, 761
AcsI RAATTY 3 cut(s) 83, 431, 475
AfaI GTAC 1 cut(s) 576
AfiI CCNNNNNNNGG 3 cut(s) 170, 247, 760
AgeI ACCGGT 1 cut(s) 602
AgsI TTSAA 3 cut(s) 123, 430, 906
AhlI ACTAGT 1 cut(s) 949
AjuI GAANNNNNNNTTGG 4 cut(s) 152, 184, 886, 918
AluBI AGCT 4 cut(s) 199, 797, 880, 911
AluI AGCT 4 cut(s) 199, 797, 880, 911
Alw26I GTCTC 4 cut(s) 100, 121, 687, 728
AlwI GGATC 6 cut(s) 197, 483, 495, 505, 559, 761
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 880
ApoI RAATTY 3 cut(s) 83, 431, 475
AsiGI ACCGGT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 225, 759
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 3 cut(s) 22, 362, 721
AvaI CYCGRG 1 cut(s) 774
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BanI GGYRCC 1 cut(s) 599
BarI GAAGNNNNNNTAC 2 cut(s) 567, 599
BbvI GCAGC 1 cut(s) 867
BccI CCATC 2 cut(s) 139, 816
BceAI ACGGC 3 cut(s) 675, 753, 989
BcgI CGANNNNNNTGC 4 cut(s) 577, 611, 809, 843
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 4 cut(s) 100, 121, 687, 728
BcuI ACTAGT 1 cut(s) 949
BfaI CTAG 2 cut(s) 113, 950
BfoI RGCGCY 1 cut(s) 226
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 2 cut(s) 221, 881
BlsI GCNGC 2 cut(s) 222, 882
Bme1390I CCNGG 1 cut(s) 699
BmeT110I CYCGRG 1 cut(s) 774
BmiI GGNNCC 4 cut(s) 601, 636, 678, 977
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 897
BpuMI CCSGG 1 cut(s) 699
Bsa29I ATCGAT 1 cut(s) 819
BsaJI CCNNGG 2 cut(s) 669, 715
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 247, 760
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 838
Bse3DI GCAATG 2 cut(s) 876, 966
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 2 cut(s) 669, 715
BseGI GGATG 3 cut(s) 273, 307, 616
BseLI CCNNNNNNNGG 3 cut(s) 170, 247, 760
BseMI GCAATG 2 cut(s) 876, 966
BseMII CTCAG 1 cut(s) 937
BseNI ACTGG 1 cut(s) 838
BseXI GCAGC 1 cut(s) 867
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 2 cut(s) 757, 815
Bsh1285I CGRYCG 2 cut(s) 529, 819
BshFI GGCC 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 602
BshVI ATCGAT 1 cut(s) 819
BsiEI CGRYCG 2 cut(s) 529, 819
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 3 cut(s) 555, 603, 698
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 170, 247, 760
BsmAI GTCTC 4 cut(s) 100, 121, 687, 728
BsmBI CGTCTC 2 cut(s) 687, 728
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 715
Bsp68I TCGCGA 1 cut(s) 815
BspACI CCGC 6 cut(s) 8, 220, 649, 674, 740, 755
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 936
BspDI ATCGAT 1 cut(s) 819
BspFNI CGCG 2 cut(s) 757, 815
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 4 cut(s) 601, 636, 678, 977
BspPI GGATC 6 cut(s) 197, 483, 495, 505, 559, 761
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 876, 966
BsrFI RCCGGY 1 cut(s) 602
BsrI ACTGG 1 cut(s) 838
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 669, 715
BssT1I CCWWGG 1 cut(s) 715
Bst4CI ACNGT 3 cut(s) 250, 574, 1027
Bst6I CTCTTC 3 cut(s) 144, 348, 804
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 191, 923
BstDSI CCRYGG 2 cut(s) 669, 715
BstF5I GGATG 3 cut(s) 273, 307, 616
BstFNI CGCG 2 cut(s) 757, 815
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 759
BstMAI GTCTC 4 cut(s) 100, 121, 687, 728
BstMCI CGRYCG 2 cut(s) 529, 819
BstMWI GCNNNNNNNGC 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 697
BstUI CGCG 2 cut(s) 757, 815
BstV1I GCAGC 1 cut(s) 867
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 722
BstYI RGATCY 1 cut(s) 488
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 819
BtgI CCRYGG 2 cut(s) 669, 715
BtsCI GGATG 3 cut(s) 273, 307, 616
BtuMI TCGCGA 1 cut(s) 815
Cac8I GCNNGC 1 cut(s) 197
CciI TCATGA 1 cut(s) 654
CfoI GCGC 2 cut(s) 225, 759
Cfr10I RCCGGY 1 cut(s) 602
ClaI ATCGAT 1 cut(s) 819
Csp6I GTAC 1 cut(s) 575
CspAI ACCGGT 1 cut(s) 602
CviAII CATG 4 cut(s) 376, 655, 716, 760
CviQI GTAC 1 cut(s) 575
DdeI CTNAG 2 cut(s) 191, 923
Eam1104I CTCTTC 3 cut(s) 144, 348, 804
EarI CTCTTC 3 cut(s) 144, 348, 804
Eco130I CCWWGG 1 cut(s) 715
Eco147I AGGCCT 1 cut(s) 32
Eco32I GATATC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 774
EcoRI GAATTC 1 cut(s) 475
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 715
Esp3I CGTCTC 2 cut(s) 687, 728
FaeI CATG 4 cut(s) 379, 658, 719, 763
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 737
FatI CATG 4 cut(s) 375, 654, 715, 759
FauI CCCGC 2 cut(s) 733, 762
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 221, 881
FokI GGATG 3 cut(s) 280, 314, 623
Fsp4HI GCNGC 2 cut(s) 221, 881
FspBI CTAG 2 cut(s) 113, 950
GlaI GCGC 2 cut(s) 224, 758
GluI GCNGC 2 cut(s) 221, 881
GsaI CCCAGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 32
HapII CCGG 3 cut(s) 555, 603, 698
HhaI GCGC 2 cut(s) 225, 759
Hin1II CATG 4 cut(s) 379, 658, 719, 763
Hin6I GCGC 2 cut(s) 223, 757
HinP1I GCGC 2 cut(s) 223, 757
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 8 cut(s) 129, 271, 287, 544, 558, 664, 702, 959
HpaII CCGG 3 cut(s) 555, 603, 698
HphI GGTGA 3 cut(s) 22, 362, 721
Hpy166II GTNNAC 3 cut(s) 67, 343, 729
Hpy188I TCNGA 6 cut(s) 267, 510, 515, 569, 687, 964
Hpy188III TCNNGA 7 cut(s) 241, 291, 492, 562, 655, 776, 814
Hpy8I GTNNAC 3 cut(s) 67, 343, 729
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 3 cut(s) 250, 574, 1027
HpyCH4V TGCA 1 cut(s) 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 648
HpyF3I CTNAG 2 cut(s) 191, 923
Hsp92II CATG 4 cut(s) 379, 658, 719, 763
HspAI GCGC 2 cut(s) 223, 757
Ksp22I TGATCA 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 1 cut(s) 981
LpnPI CCDG 6 cut(s) 254, 456, 568, 616, 711, 819
Lsp1109I GCAGC 1 cut(s) 867
LweI GCATC 1 cut(s) 660
MaeI CTAG 2 cut(s) 113, 950
MaeIII GTNAC 2 cut(s) 1014, 1035
MboII GAAGA 3 cut(s) 161, 365, 791
MflI RGATCY 1 cut(s) 488
MluCI AATT 4 cut(s) 83, 431, 475, 626
MlyI GAGTC 2 cut(s) 123, 553
MmeI TCCRAC 3 cut(s) 264, 309, 794
MnlI CCTC 3 cut(s) 6, 358, 430
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 2 cut(s) 605, 720
MspI CCGG 3 cut(s) 555, 603, 698
MspR9I CCNGG 1 cut(s) 699
MvnI CGCG 2 cut(s) 757, 815
MwoI GCNNNNNNNGC 1 cut(s) 648
NciI CCSGG 1 cut(s) 699
NcoI CCATGG 1 cut(s) 715
NlaIII CATG 4 cut(s) 379, 658, 719, 763
NlaIV GGNNCC 4 cut(s) 601, 636, 678, 977
NruI TCGCGA 1 cut(s) 815
NspI RCATGY 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 774
PagI TCATGA 1 cut(s) 654
PceI AGGCCT 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 804
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 6 cut(s) 271, 287, 558, 664, 702, 959
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 2 cut(s) 222, 882
Ple19I CGATCG 2 cut(s) 529, 819
PleI GAGTC 2 cut(s) 123, 552
PpsI GAGTC 2 cut(s) 123, 552
PspFI CCCAGC 1 cut(s) 470
PspN4I GGNNCC 4 cut(s) 601, 636, 678, 977
PsuI RGATCY 1 cut(s) 488
PvuI CGATCG 2 cut(s) 529, 819
RruI TCGCGA 1 cut(s) 815
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
RseI CAYNNNNRTG 2 cut(s) 605, 720
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 2 cut(s) 221, 881
SchI GAGTC 2 cut(s) 123, 553
ScrFI CCNGG 1 cut(s) 699
SetI ASST 7 cut(s) 201, 233, 284, 422, 799, 882, 913
SfaNI GCATC 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 774
SlaI CTCGAG 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 605, 720
SmlI CTYRAG 2 cut(s) 774, 912
SmoI CTYRAG 2 cut(s) 774, 912
SpeI ACTAGT 1 cut(s) 949
Sse9I AATT 4 cut(s) 83, 431, 475, 626
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 6 cut(s) 8, 220, 649, 674, 740, 755
SspMI CTAG 2 cut(s) 113, 950
StuI AGGCCT 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 3 cut(s) 250, 574, 1027
TaqI TCGA 4 cut(s) 26, 765, 775, 819
TasI AATT 4 cut(s) 83, 431, 475, 626
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 6 cut(s) 271, 287, 558, 664, 702, 959
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TseI GCWGC 1 cut(s) 880
TspDTI ATGAA 6 cut(s) 96, 263, 318, 627, 791, 972
TspGWI ACGGA 3 cut(s) 647, 669, 746
XapI RAATTY 3 cut(s) 83, 431, 475
XceI RCATGY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 774
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 2 cut(s) 113, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.