Rorug04G0251500

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
42455079 .. 42455809
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0251500.1

Sequence Viewer

Length: 309 bp
ATGGAGGCAGTGACAAAGATGGTGTCCGAAAGACCCGTAGTGATCTTCAGCAAGAGCTCATGCTGCATGTGCCACTCAATCAAGACCTTGCTTTGTGACTTTGGGGTGAACCCAGCAGTTCATGAGCTTGATGAGATGCAAGGAGGGAGAGAGATAGAGCAAGCTCTGTCAAGGCTTGGATGCAACCCATCCGTGCCGGCTGTGTTCATTGGCGGTGAACTCGTGGGTGGAGCCAATGAGATCATGAGTCTTCATCTTAAGCGCTCCTTGATCCCCATGCTTAAGCACGTCGGCGCGTTATGGGTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

6.39

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1.3e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 3 cut(s) 57, 127, 164
AluI AGCT 3 cut(s) 57, 127, 164
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 264, 296
AsuHPI GGTGA 2 cut(s) 118, 227
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 13, 196
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 196
BseGI GGATG 2 cut(s) 185, 188
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 42, 240, 270
BspACI CCGC 1 cut(s) 213
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 2 cut(s) 121, 243
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 265
BspTI CTTAAG 2 cut(s) 257, 281
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 3 cut(s) 42, 240, 270
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 2 cut(s) 162, 198
BstF5I GGATG 2 cut(s) 185, 188
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 296
BstKTI GATC 3 cut(s) 45, 243, 273
BstMBI GATC 3 cut(s) 42, 240, 270
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstNSI RCATGY 1 cut(s) 70
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 242
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 185, 188
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 162, 198
CciI TCATGA 2 cut(s) 121, 243
CfoI GCGC 2 cut(s) 264, 296
Cfr10I RCCGGY 1 cut(s) 196
CviAII CATG 5 cut(s) 60, 67, 122, 244, 277
CviJI RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
CviKI_1 RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
DpnI GATC 3 cut(s) 44, 242, 272
DpnII GATC 3 cut(s) 42, 240, 270
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 5 cut(s) 63, 70, 125, 247, 280
FaiI YATR 6 cut(s) 61, 68, 123, 245, 278, 301
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 5 cut(s) 59, 66, 121, 243, 276
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 175, 192
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 2 cut(s) 263, 295
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 1 cut(s) 197
HhaI GCGC 2 cut(s) 264, 296
Hin1II CATG 5 cut(s) 63, 70, 125, 247, 280
Hin6I GCGC 2 cut(s) 262, 294
HinP1I GCGC 2 cut(s) 262, 294
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 118, 227
Hpy166II GTNNAC 2 cut(s) 109, 218
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 82, 122, 244
Hpy8I GTNNAC 2 cut(s) 109, 218
Hpy99I CGWCG 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 66, 139, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 63, 70, 125, 247, 280
HspAI GCGC 2 cut(s) 262, 294
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 42, 240, 270
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 2 cut(s) 126, 210
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 126, 170
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 10, 95
MalI GATC 3 cut(s) 44, 242, 272
MboI GATC 3 cut(s) 42, 240, 270
MboII GAAGA 2 cut(s) 37, 242
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 1 cut(s) 137
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 2 cut(s) 258, 282
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 3 cut(s) 42, 240, 270
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 5 cut(s) 63, 70, 125, 247, 280
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 10, 95
NspI RCATGY 1 cut(s) 70
PagI TCATGA 2 cut(s) 121, 243
PdiI GCCGGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 258, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 3 cut(s) 42, 240, 270
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 59, 89, 129, 166, 291
SfaNI GCATC 2 cut(s) 126, 170
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
SsiI CCGC 1 cut(s) 213
SstI GAGCTC 1 cut(s) 59
TaiI ACGT 1 cut(s) 291
Tru1I TTAA 2 cut(s) 258, 282
Tru9I TTAA 2 cut(s) 258, 282
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 10, 95
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 2 cut(s) 10, 95
TspDTI ATGAA 3 cut(s) 110, 196, 242
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 15
Vha464I CTTAAG 2 cut(s) 257, 281
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.