Rroxscaffold_5G00372520

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000168
Physical Location & Seq
Reverse (-)
53959332 .. 53961693
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372520.1

Sequence Viewer

Length: 411 bp
ATGGATGGGTGTTTTGATTGTTTCGCCGTCGTCGCAGTTCACCGTGCTTGGCGATCGCCTTGTGTCACTATGCTTCAAATGCTTTGGCCCCCTCTCCGATTGCTACGTGCTTTGGCTCGAAACCGAAGCAGCAAAGAAATTCCAAGAACTAGGCTTCCTCCAGGACCAAAGCCATTTCCATTGATTGGGAATCTGTTTGAGCTTGGAGACAAACCACAAGTCTCTCTTACCAAGCTTTCCCAACGCTATGGCCCCATTATTAGTTTGCAACTAGGCCAATTAACCACTGCTGTAGTTTCTTCGCCAACTCTTGCTAAAGAAATCCTCCGAATTCATGATCAAGTCTTCTGCAACCGAACCCTCCCAGATGCAATCCACGCCTGCAAGCACGCCGACTACAGTTTGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

9.72

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 53 - 122 7.4e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AcsI RAATTY 2 cut(s) 138, 330
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 2 cut(s) 202, 235
AluI AGCT 2 cut(s) 202, 235
Alw26I GTCTC 2 cut(s) 201, 226
AoxI GGCC 3 cut(s) 86, 250, 274
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 138, 330
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AsiSI GCGATCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 87, 164, 251
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 141
BceAI ACGGC 2 cut(s) 11, 391
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 201, 226
BfaI CTAG 2 cut(s) 150, 272
BfmI CTRYAG 2 cut(s) 291, 397
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 87, 164, 251
BmiI GGNNCC 2 cut(s) 89, 253
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 88, 252, 276
BsiEI CGRYCG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 2 cut(s) 201, 226
BsnI GGCC 3 cut(s) 88, 252, 276
Bsp143I GATC 2 cut(s) 53, 337
BspANI GGCC 3 cut(s) 88, 252, 276
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 89, 253
BssMI GATC 2 cut(s) 53, 337
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 44, 401
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 382, 386, 390
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 56, 340
BstMAI GTCTC 2 cut(s) 201, 226
BstMBI GATC 2 cut(s) 53, 337
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 32, 79, 377
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 2 cut(s) 291, 397
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 3 cut(s) 88, 252, 276
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 382, 386, 390
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 3 cut(s) 87, 164, 251
CviAII CATG 1 cut(s) 335
CviJI RGCY 8 cut(s) 88, 116, 154, 172, 202, 235, 252, 276
CviKI_1 RGCY 8 cut(s) 88, 116, 154, 172, 202, 235, 252, 276
DpnI GATC 2 cut(s) 55, 339
DpnII GATC 2 cut(s) 53, 337
Eco47I GGWCC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 338
FaiI YATR 3 cut(s) 71, 249, 336
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 2 cut(s) 150, 272
GluI GCNGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 3 cut(s) 88, 252, 276
Hin1II CATG 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 2 cut(s) 98, 329
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 2 cut(s) 32, 35
HpyCH4III ACNGT 2 cut(s) 44, 401
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 268, 351, 371, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 79, 377
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 338
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 53, 337
LpnPI CCDG 4 cut(s) 147, 174, 378, 394
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 150, 272
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 55, 339
MboI GATC 2 cut(s) 53, 337
MboII GAAGA 2 cut(s) 291, 337
MluCI AATT 3 cut(s) 138, 278, 330
MnlI CCTC 4 cut(s) 102, 168, 335, 371
MseI TTAA 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 32, 79, 377
NdeII GATC 2 cut(s) 53, 337
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 2 cut(s) 89, 253
NmuCI GTSAC 1 cut(s) 64
PagI TCATGA 1 cut(s) 334
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 89, 253
PspPI GGNCC 3 cut(s) 87, 164, 251
PvuI CGATCG 1 cut(s) 56
RgaI GCGATCGC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 53, 337
Sau96I GGNCC 3 cut(s) 87, 164, 251
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 109, 204, 237
SfaAI GCGATCGC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 2 cut(s) 291, 397
SgfI GCGATCGC 1 cut(s) 56
SinI GGWCC 1 cut(s) 164
Sse9I AATT 3 cut(s) 138, 278, 330
SspMI CTAG 2 cut(s) 150, 272
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 44, 401
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 118
TasI AATT 3 cut(s) 138, 278, 330
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 2 cut(s) 138, 330
XspI CTAG 2 cut(s) 150, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.