RchiOBHm_Chr4g0431661

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000168
Physical Location & Seq
Reverse (-)
55849087 .. 55849473
387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40030

Sequence Viewer

Length: 387 bp
ATGGCCTGGATTCCTGTGTCAGCAAGATGGAGAAATCTTCGCAAAATATGCAACTTGCAATTATTTCCCCCCGAAGTTCTTGATGCCAACCAAGCCAACCGAAGCGTAAAGGTGCAAAAGCTCATCGACAATGTTAATGAAAGCATGAGGGCTGGTGAGGCAGTAGATATCGAAAGGGCTGCATTTACAATCGCGCTCAATTTGTTATCGCAGACTATCTTCTCTGTGGATATTGCTGACCCCAGTAGTGAGACAGCTAGGGAGTTCAAGGAGACTGTTTGGGGTATGTTTGAAGAGACAGGGAAACCAAACTTGGCGGACTATTTTCCTTTGCTTAGGAAACTTGACCCCCAAGGCATAAAGTGGCGCTTGACCTATCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

6.59

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 115 1.3e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 317
AgsI TTSAA 2 cut(s) 268, 293
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 2 cut(s) 121, 257
AluI AGCT 2 cut(s) 121, 257
Alw26I GTCTC 3 cut(s) 245, 266, 290
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 196, 369
AsuHPI GGTGA 1 cut(s) 167
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 245, 266, 290
BfaI CTAG 2 cut(s) 258, 385
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 3 cut(s) 245, 266, 290
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 194
BsrI ACTGG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 196, 369
BstMAI GTCTC 3 cut(s) 245, 266, 290
BstMWI GCNNNNNNNGC 3 cut(s) 48, 92, 158
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 5
CfoI GCGC 2 cut(s) 196, 369
CviAII CATG 1 cut(s) 145
CviJI RGCY 6 cut(s) 5, 95, 121, 152, 179, 257
CviKI_1 RGCY 6 cut(s) 5, 95, 121, 152, 179, 257
DdeI CTNAG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 352
Eco32I GATATC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 148
FaiI YATR 4 cut(s) 49, 146, 287, 359
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 258, 385
GlaI GCGC 2 cut(s) 195, 368
GluI GCNGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 196, 369
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 2 cut(s) 194, 367
HinP1I GCGC 2 cut(s) 194, 367
HinfI GANTC 1 cut(s) 10
HphI GGTGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 51, 58, 115, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 92, 158
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 2 cut(s) 194, 367
LpnPI CCDG 5 cut(s) 19, 27, 138, 256, 285
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 258, 385
MboII GAAGA 3 cut(s) 29, 211, 305
MluCI AATT 2 cut(s) 59, 199
MnlI CCTC 2 cut(s) 141, 151
MseI TTAA 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 48, 92, 158
NlaIII CATG 1 cut(s) 148
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 7
SetI ASST 4 cut(s) 114, 123, 259, 377
SfaNI GCATC 1 cut(s) 73
Sse9I AATT 2 cut(s) 59, 199
SsiI CCGC 1 cut(s) 317
SspMI CTAG 2 cut(s) 258, 385
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 126, 171
TasI AATT 2 cut(s) 59, 199
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 153
XspI CTAG 2 cut(s) 258, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.