Rmu_co8203018.1_g000001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8203018.1
OG0000168
Physical Location & Seq
Forward (+)
1 .. 694
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8203018.1_g000001.1.cds

Sequence Viewer

Length: 581 bp
acaaaccccacctctcacttactaatctttcccaacactatggccccatcataagtttgcaactcggccgattaaccacaatagtcatctcttcaccaactctggccaaagaaatcctccaaacccatgaccaagtcttctacaaccaacccatccgagatggaatccacacttataaacacagcgaatacagcatggcttggattcctgtgtcagcaagatggacaaatcttcgcaaaatatgcaacttgcaattgttttcccctaaagttcttgatgccaaccaagccaacggacgcgtaaaggtacaaaatctcatcgataatgtcaatgaaatcatgatggccggtgaggcagtagatattggaagggctgcatttataaccgcgctcaatttgttgtcgcaaactatcttctctgtggatttagctgaccctagtagtgagacagctagggagttcaaggagactgtttggggtatgtttgaagagacagggaaaccaaacttgacggactattttccttttcttaggaaacttgacctccaagacataaggtggcgcttgacctatcactactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

192

Amino Acids

22.01

Weight (kDa)

7.19

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 176, 382
AccII CGCG 2 cut(s) 299, 388
AciI CCGC 1 cut(s) 386
AcoI YGGCCR 3 cut(s) 66, 104, 344
AfaI GTAC 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 462, 487
AluBI AGCT 2 cut(s) 430, 451
AluI AGCT 2 cut(s) 430, 451
Alw26I GTCTC 3 cut(s) 439, 460, 484
AoxI GGCC 4 cut(s) 42, 66, 104, 344
ApeKI GCWGC 1 cut(s) 373
AspLEI GCGC 2 cut(s) 390, 563
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 86, 361
BalI TGGCCA 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 360
BccI CCATC 5 cut(s) 55, 154, 160, 215, 336
BcoDI GTCTC 3 cut(s) 439, 460, 484
BfaI CTAG 3 cut(s) 437, 452, 579
BfoI RGCGCY 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 352
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bse118I RCCGGY 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 320
BseGI GGATG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 299, 388
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 44, 68, 106, 346
BshVI ATCGAT 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 347
BsmAI GTCTC 3 cut(s) 439, 460, 484
BsnI GGCC 4 cut(s) 44, 68, 106, 346
BspACI CCGC 1 cut(s) 386
BspANI GGCC 4 cut(s) 44, 68, 106, 346
BspDI ATCGAT 1 cut(s) 320
BspFNI CGCG 2 cut(s) 299, 388
BspHI TCATGA 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 2 cut(s) 96, 482
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 529
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 299, 388
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 2 cut(s) 390, 563
BstMAI GTCTC 3 cut(s) 439, 460, 484
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 4 cut(s) 191, 242, 286, 352
BstUI CGCG 2 cut(s) 299, 388
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 4 cut(s) 44, 68, 106, 346
BsuTUI ATCGAT 1 cut(s) 320
BtsCI GGATG 1 cut(s) 152
CciI TCATGA 1 cut(s) 338
CfoI GCGC 2 cut(s) 390, 563
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 320
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 127, 195, 339
CviJI RGCY 9 cut(s) 44, 68, 106, 199, 289, 346, 373, 430, 451
CviKI_1 RGCY 9 cut(s) 44, 68, 106, 199, 289, 346, 373, 430, 451
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 529
EaeI YGGCCR 3 cut(s) 66, 104, 344
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 96, 482
EarI CTCTTC 2 cut(s) 96, 482
EclXI CGGCCG 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 66
FaeI CATG 3 cut(s) 130, 198, 342
FatI CATG 3 cut(s) 126, 194, 338
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 3 cut(s) 437, 452, 579
GlaI GCGC 2 cut(s) 389, 562
GluI GCNGC 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 4 cut(s) 44, 68, 106, 346
HapII CCGG 1 cut(s) 347
HgaI GACGC 1 cut(s) 305
HhaI GCGC 2 cut(s) 390, 563
Hin1II CATG 3 cut(s) 130, 198, 342
Hin6I GCGC 2 cut(s) 388, 561
HinP1I GCGC 2 cut(s) 388, 561
HinfI GANTC 2 cut(s) 164, 204
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 86, 361
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 274, 339
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4V TGCA 4 cut(s) 60, 245, 252, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 242, 286, 352
HpyF3I CTNAG 1 cut(s) 529
Hsp92II CATG 3 cut(s) 130, 198, 342
HspAI GCGC 2 cut(s) 388, 561
LpnPI CCDG 4 cut(s) 88, 221, 360, 479
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 267
MaeI CTAG 3 cut(s) 437, 452, 579
MboII GAAGA 5 cut(s) 83, 129, 223, 405, 499
MfeI CAATTG 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 106
MluCI AATT 2 cut(s) 253, 393
MluI ACGCGT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 106
MnlI CCTC 4 cut(s) 22, 127, 345, 553
Mox20I TGGCCA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 106
MseI TTAA 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 106
MspI CCGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 253
MvnI CGCG 2 cut(s) 299, 388
MwoI GCNNNNNNNGC 4 cut(s) 191, 242, 286, 352
NlaIII CATG 3 cut(s) 130, 198, 342
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 338
PfeI GAWTC 2 cut(s) 164, 204
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 375
PsiI TTATAA 2 cut(s) 176, 382
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 73
SatI GCNGC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 43
SetI ASST 7 cut(s) 14, 308, 432, 453, 545, 559, 571
SfaNI GCATC 1 cut(s) 267
Sse9I AATT 2 cut(s) 253, 393
SsiI CCGC 1 cut(s) 386
SspMI CTAG 3 cut(s) 437, 452, 579
TaaI ACNGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 320
TasI AATT 2 cut(s) 253, 393
TfiI GAWTC 2 cut(s) 164, 204
Tru1I TTAA 1 cut(s) 73
Tru9I TTAA 1 cut(s) 73
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 2 cut(s) 308, 526
Tth111I GACNNNGTC 1 cut(s) 133
XspI CTAG 3 cut(s) 437, 452, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.