Rh4BG309800

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000168
Physical Location & Seq
Forward (+)
47823749 .. 47824306
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG309800.1

Sequence Viewer

Length: 558 bp
ATGGCGGAGCTACTACACAACCCAGAGAGCCTTTCTAAAGCTCAAGAAGAGCTAGATCAAATGGTTGGAAAAGGAAAACCAATCGAGCAATCCGACATTGCCAGACTCCCTTACTTACAAACAATAATCATGGAAACCTTGCGGTTGCACCCAGCGGGTCCATTGCTACTGCCACGAAAAGCTGAAACAGATGTAGAAATCGGGGGCTACATTGTCCCGAAGGGTGCACAAGTTCTAGTTAATGTTTGGGCCATAGGCCGAGACGCCGACATTTGGGACAGTCCAAACTCTTTTATGCCAGAGAGGTTCTTAGGATTACACAACCAAATTGATGCTATGGGAAAAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGAATATGTCCAGGTTTGCCATTGGCAATGAGAATGTTGCACTTGATGTTGGGTTCACTCATCAACTGCTTTGATTGGAAGCTTGAAGATGGGGTTGTACCTGAGACGATGAACATGGAAGACAGGTTTGACCTCACTTTACAAATGGCTCAGCCTCTCAAAGCTGTTCCCTACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

185

Amino Acids

20.71

Weight (kDa)

5.08

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 166 1.7e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 368
AciI CCGC 3 cut(s) 5, 142, 155
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 273, 368
AgsI TTSAA 1 cut(s) 464
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 7 cut(s) 10, 41, 52, 182, 355, 460, 542
AluI AGCT 7 cut(s) 10, 41, 52, 182, 355, 460, 542
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 2 cut(s) 255, 476
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 2 cut(s) 249, 256
ApaLI GTGCAC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 158, 249
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 229
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 255, 476
BfaI CTAG 2 cut(s) 53, 236
BlpI GCTNAGC 1 cut(s) 528
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 158, 249
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 368
Bse3DI GCAATG 3 cut(s) 96, 161, 411
BseBI CCWGG 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 273, 368
BseMI GCAATG 3 cut(s) 96, 161, 411
BseMII CTCAG 2 cut(s) 471, 542
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 2 cut(s) 251, 258
BsiHKAI GWGCWC 1 cut(s) 229
BslFI GGGAC 2 cut(s) 200, 290
BslI CCNNNNNNNGG 2 cut(s) 273, 368
BsmAI GTCTC 2 cut(s) 255, 476
BsmBI CGTCTC 2 cut(s) 255, 476
BsmFI GGGAC 2 cut(s) 200, 290
BsnI GGCC 2 cut(s) 251, 258
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 55
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 3 cut(s) 5, 142, 155
BspANI GGCC 2 cut(s) 251, 258
BspCNI CTCAG 2 cut(s) 472, 541
BspLI GGNNCC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 42
BsrDI GCAATG 3 cut(s) 96, 161, 411
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 264
BstDEI CTNAG 3 cut(s) 310, 480, 528
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 255, 476
BstMBI GATC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 251, 258
Cfr13I GGNCC 2 cut(s) 158, 249
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 476
CviAII CATG 2 cut(s) 130, 493
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 3 cut(s) 310, 480, 528
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 388
Esp3I CGTCTC 2 cut(s) 255, 476
FaeI CATG 2 cut(s) 133, 496
FaiI YATR 7 cut(s) 131, 254, 296, 338, 385, 494, 556
FaqI GGGAC 2 cut(s) 200, 290
FatI CATG 2 cut(s) 129, 492
FauI CCCGC 1 cut(s) 148
FspBI CTAG 2 cut(s) 53, 236
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 2 cut(s) 251, 258
HgaI GACGC 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 133, 496
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 227, 434
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 44, 217
Hpy8I GTNNAC 2 cut(s) 227, 434
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 148, 227, 418
HpyF3I CTNAG 3 cut(s) 310, 480, 528
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 133, 496
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 8 cut(s) 36, 115, 165, 312, 375, 402, 487, 492
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 53, 236
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 59, 476, 509
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 46, 117
MnlI CCTC 4 cut(s) 297, 369, 521, 543
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 133, 496
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 368
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 2 cut(s) 158, 249
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 158, 249
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 1 cut(s) 327
SsiI CCGC 3 cut(s) 5, 142, 155
SspMI CTAG 2 cut(s) 53, 236
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 327
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 158
XspI CTAG 2 cut(s) 53, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.