RchiOBHm_Chr4g0431011

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000168
Physical Location & Seq
Reverse (-)
55364831 .. 55367356
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39972

Sequence Viewer

Length: 696 bp
ATGTTGGATATACTTATGAACATCAGTGTAGAGAAGATGGAGAGTATAGATATGCCCGAAACTCAACATTTATTTCTGGTTAGATATATTTTCTGCTCACACAACACAAGTTCAGCCACAATGGAATGGGCAATGGCTGAGCTACTACGCAACCCAAAAACCCTTTTGAAAGCTGATCAAGCAGAACTCGAGCAAGTGATTGGAAAAGGGAAACTAGTTGAGGAATCAGACATTGCACGACTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGAATTCACCCAACAATTCCATTTTTACTCCCCTGGAAAGCAGAAACAAACATAGAAATTGGCGGGTATATAATCCCAAAGGGTGCACGAGTTCTAATCAATTTTTGGGCCATAAGCAGAGACCCCATCACTTGGGACAACCCAAACTTGTTTATGCCTGAGAGGTTCCTGGGATTAGACAACCAAATTGATGTTACGGGGAAAAACTTTGAGCTTATTCCGTTTGGTGGTGGGAGGAGAATATGTCCCGGACTTCCATTGGCAGTAAGAATGTTGCACTTGATGTTGGGCTCACTAATTAACTGCTTTGATTGGAAGCTTGAAGATGGAGTTGTACCAGAGACTATGAACATGGAAGATAAGTTTAGCCTCACCTTACAAATGGCTCAGCCTCTGAGAGCTGTGCCTAAGAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

231

Amino Acids

26.36

Weight (kDa)

5.64

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 15 - 216 2.2e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 408
AciI CCGC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 408, 503
AgsI TTSAA 2 cut(s) 169, 599
AhlI ACTAGT 1 cut(s) 214
AjnI CCWGG 2 cut(s) 308, 444
AluBI AGCT 5 cut(s) 142, 173, 490, 595, 677
AluI AGCT 5 cut(s) 142, 173, 490, 595, 677
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 390, 611
Alw44I GTGCAC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 384
ApaLI GTGCAC 1 cut(s) 360
ApoI RAATTY 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 275, 640
AsuII TTCGAA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 569
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 364
BccI CCATC 3 cut(s) 31, 410, 596
BciT130I CCWGG 2 cut(s) 310, 446
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 390, 611
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BlpI GCTNAGC 2 cut(s) 138, 663
Bme1390I CCNGG 3 cut(s) 310, 446, 525
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 3 cut(s) 310, 446, 525
Bpu1102I GCTNAGC 2 cut(s) 138, 663
Bpu14I TTCGAA 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 308, 445
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 408, 503
Bse3DI GCAATG 2 cut(s) 138, 231
BseBI CCWGG 2 cut(s) 310, 446
BseDI CCNNGG 2 cut(s) 308, 445
BseLI CCNNNNNNNGG 2 cut(s) 408, 503
BseMI GCAATG 2 cut(s) 138, 231
BseMII CTCAG 4 cut(s) 129, 426, 662, 677
BseRI GAGGAG 1 cut(s) 526
BseSI GKGCMC 1 cut(s) 364
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 425, 507
BslI CCNNNNNNNGG 2 cut(s) 408, 503
BsmAI GTCTC 2 cut(s) 390, 611
BsmFI GGGAC 2 cut(s) 425, 507
BsnI GGCC 1 cut(s) 386
Bso31I GGTCTC 1 cut(s) 390
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 364, 569
Bsp143I GATC 1 cut(s) 175
Bsp1720I GCTNAGC 2 cut(s) 138, 663
BspACI CCGC 1 cut(s) 339
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 4 cut(s) 130, 427, 663, 676
BspLI GGNNCC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 390
BsrDI GCAATG 2 cut(s) 138, 231
BssECI CCNNGG 2 cut(s) 308, 445
BssMI GATC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 310, 446
BstBI TTCGAA 1 cut(s) 277
BstDEI CTNAG 5 cut(s) 138, 435, 663, 671, 684
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 390, 611
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 310, 446
BstSCI CCNGG 3 cut(s) 308, 444, 523
BstSLI GKGCMC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 611
CviAII CATG 1 cut(s) 628
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 5 cut(s) 138, 435, 663, 671, 684
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 308, 444
EcoT38I GRGCYC 1 cut(s) 569
FaeI CATG 1 cut(s) 631
FaqI GGGAC 2 cut(s) 425, 507
FatI CATG 1 cut(s) 627
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 569
FspBI CTAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 386
HapII CCGG 1 cut(s) 525
Hin1II CATG 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 224, 240
HpaII CCGG 1 cut(s) 525
HphI GGTGA 2 cut(s) 275, 640
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 229, 672
Hpy8I GTNNAC 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 236, 362, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 5 cut(s) 138, 435, 663, 671, 684
Hsp92II CATG 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 8 cut(s) 62, 295, 322, 431, 447, 458, 538, 627
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 469
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 46, 611, 644
MhlI GDGCHC 2 cut(s) 364, 569
MluCI AATT 6 cut(s) 279, 291, 333, 376, 462, 573
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 5 cut(s) 214, 432, 504, 656, 678
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 1 cut(s) 576
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 3 cut(s) 310, 446, 525
MvaI CCWGG 2 cut(s) 310, 446
MwoI GCNNNNNNNGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 525
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 1 cut(s) 443
NspV TTCGAA 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 523
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp6I CCWGG 2 cut(s) 308, 444
PspGI CCWGG 2 cut(s) 308, 444
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 1 cut(s) 384
PspXI VCTCGAGB 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 670
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
SaqAI TTAA 1 cut(s) 576
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 310, 446, 525
SduI GDGCHC 2 cut(s) 364, 569
SetI ASST 7 cut(s) 144, 175, 443, 492, 597, 653, 679
Sfr274I CTCGAG 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 6 cut(s) 279, 291, 333, 376, 462, 573
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 308, 444, 523
TaqI TCGA 2 cut(s) 189, 277
TasI AATT 6 cut(s) 279, 291, 333, 376, 462, 573
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 32, 638
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 408
VneI GTGCAC 1 cut(s) 360
XapI RAATTY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.