RLG00000008331

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
29024784 .. 29025997
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008331

Sequence Viewer

Length: 786 bp
ATGACTTCAACAGGAAGAGCTGGGTTCCGAGATATTTCTAGAAACCCCTCCTCGTTTTATCATCACGGCACAAAACTTACAATTGAACAGAGACTTCCCAGTCAACAAAAAATCAGCACTCTATGTGGATCTGAGTGGGGCCCCTTTGATCTACAAAACTTTTGGTCCATAGTTTCTTCCCCAACTCTTGCCAAAGAAATACTCCAATTCCATGACCAAGTCTTCTGCAACCGAACTCTCCTAGATGCAATCCACGCCTGCAAGCATGCCGACTACAGTTTGGCCTGGCTTCCTATATCAACAAGATGGAGAAATCTTCGCACAACATGCAACTTGCAATTGTTTGCCCCCAAAGTTCTCGATGCCAACCACACCAATCGGGGCGTAAAGGTGCAAAAGCTCATAGATGAGGTCAATGAAAGCATGAGGGCCGGTGAAGCAGTTGATGTCAGAAGGGCTGCTTCCACAACCGCGCTCAATTTGTTGTCGCAGACTATATTCTCTGTGGATTTAGCTGACCAGAGTAGCAAGATAGTCAGGGAGACTGTTTGGGGTGTGATAGAAGAGATGGGGAAACCAAACTTAGTGGGCTATTTTCCTTTGCTAAGGAAGCTTGATCCACAAGGCATAAACCGGCGCAACACGAATTACTTCCGGAAGACGATACTCATCTTTGATCAAATGATCTATCAAAGAGGGCGGCTAGGTTTCCTTTGGAAAGTTTGGAGGCTCTCGTCCGGTGGCTCCGTGCCGCACCAGGCTATTAGTCTTGTCGGTAAACGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

29.72

Weight (kDa)

9.93

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 57 - 230 4.2e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AccII CGCG 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 654
AciI CCGC 3 cut(s) 471, 700, 752
AclWI GGATC 2 cut(s) 136, 611
AgsI TTSAA 2 cut(s) 9, 86
AjnI CCWGG 2 cut(s) 284, 756
AluBI AGCT 4 cut(s) 20, 400, 515, 613
AluI AGCT 4 cut(s) 20, 400, 515, 613
Alw26I GTCTC 2 cut(s) 85, 536
AlwI GGATC 2 cut(s) 136, 611
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 3 cut(s) 139, 282, 429
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 2 cut(s) 475, 639
AspS9I GGNCC 4 cut(s) 139, 140, 165, 429
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 2 cut(s) 214, 665
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 300, 562
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 286, 758
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 85, 536
BfaI CTAG 3 cut(s) 39, 242, 704
BfmI CTRYAG 1 cut(s) 274
BisI GCNGC 3 cut(s) 459, 701, 752
BlsI GCNGC 3 cut(s) 460, 702, 753
Bme1390I CCNGG 2 cut(s) 286, 758
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 4 cut(s) 139, 140, 165, 429
BmiI GGNNCC 5 cut(s) 26, 140, 141, 142, 745
BmrFI CCNGG 2 cut(s) 286, 758
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 235, 352
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 2 cut(s) 214, 665
Bpu10I CCTNAGC 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 668
BsaWI WCCGGW 2 cut(s) 654, 737
Bse118I RCCGGY 2 cut(s) 431, 633
Bse1I ACTGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 668
BseAI TCCGGA 1 cut(s) 654
BseBI CCWGG 2 cut(s) 286, 758
BseJI GATNNNNATC 1 cut(s) 668
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 445
BseYI CCCAGC 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 3 cut(s) 141, 284, 431
BsiSI CCGG 4 cut(s) 432, 634, 655, 738
BsmAI GTCTC 2 cut(s) 85, 536
BsnI GGCC 3 cut(s) 141, 284, 431
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 654
Bsp143I GATC 5 cut(s) 128, 148, 616, 676, 684
BspACI CCGC 3 cut(s) 471, 700, 752
BspANI GGCC 3 cut(s) 141, 284, 431
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 654
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 5 cut(s) 26, 140, 141, 142, 745
BspPI GGATC 2 cut(s) 136, 611
BspQI GCTCTTC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 431, 633
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 2 cut(s) 431, 633
BssMI GATC 5 cut(s) 128, 148, 616, 676, 684
Bst2UI CCWGG 2 cut(s) 286, 758
Bst4CI ACNGT 3 cut(s) 278, 547, 783
Bst6I CTCTTC 2 cut(s) 10, 558
BstAPI GCANNNNNTGC 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 259, 263, 267
BstDEI CTNAG 3 cut(s) 132, 583, 605
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 2 cut(s) 475, 639
BstKTI GATC 5 cut(s) 131, 151, 619, 679, 687
BstMAI GTCTC 2 cut(s) 85, 536
BstMBI GATC 5 cut(s) 128, 148, 616, 676, 684
BstMWI GCNNNNNNNGC 4 cut(s) 254, 327, 437, 610
BstNI CCWGG 2 cut(s) 286, 758
BstNSI RCATGY 2 cut(s) 269, 330
BstSCI CCNGG 2 cut(s) 284, 756
BstSFI CTRYAG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 214, 665
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 3 cut(s) 141, 284, 431
Cac8I GCNNGC 3 cut(s) 259, 263, 267
CfoI GCGC 2 cut(s) 475, 639
Cfr10I RCCGGY 2 cut(s) 431, 633
Cfr13I GGNCC 4 cut(s) 139, 140, 165, 429
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 4 cut(s) 212, 266, 327, 424
DdeI CTNAG 3 cut(s) 132, 583, 605
DpnI GATC 5 cut(s) 130, 150, 618, 678, 686
DpnII GATC 5 cut(s) 128, 148, 616, 676, 684
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 10, 558
EarI CTCTTC 2 cut(s) 10, 558
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 139, 140
EcoRII CCWGG 2 cut(s) 284, 756
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 4 cut(s) 215, 269, 330, 427
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FatI CATG 4 cut(s) 211, 265, 326, 423
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 3 cut(s) 459, 701, 752
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 459, 701, 752
FspBI CTAG 3 cut(s) 39, 242, 704
GlaI GCGC 2 cut(s) 474, 638
GluI GCNGC 3 cut(s) 459, 701, 752
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 3 cut(s) 141, 284, 431
HapII CCGG 4 cut(s) 432, 634, 655, 738
HhaI GCGC 2 cut(s) 475, 639
Hin1II CATG 4 cut(s) 215, 269, 330, 427
Hin6I GCGC 2 cut(s) 473, 637
HinP1I GCGC 2 cut(s) 473, 637
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 611
HpaII CCGG 4 cut(s) 432, 634, 655, 738
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 104, 779
Hpy188I TCNGA 3 cut(s) 29, 133, 452
Hpy188III TCNNGA 3 cut(s) 39, 359, 655
Hpy8I GTNNAC 2 cut(s) 104, 779
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 3 cut(s) 278, 547, 783
HpyCH4V TGCA 6 cut(s) 228, 248, 261, 330, 337, 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 327, 437, 610
HpyF3I CTNAG 3 cut(s) 132, 583, 605
Hsp92II CATG 4 cut(s) 215, 269, 330, 427
HspAI GCGC 2 cut(s) 473, 637
Kpn2I TCCGGA 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 128, 148, 616, 676, 684
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 235, 352
MaeI CTAG 3 cut(s) 39, 242, 704
MalI GATC 5 cut(s) 130, 150, 618, 678, 686
MboI GATC 5 cut(s) 128, 148, 616, 676, 684
MboII GAAGA 6 cut(s) 27, 168, 214, 308, 575, 670
MfeI CAATTG 2 cut(s) 81, 338
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 5 cut(s) 81, 206, 338, 478, 646
MnlI CCTC 6 cut(s) 58, 61, 403, 420, 689, 720
MroI TCCGGA 1 cut(s) 654
MroXI GAANNNNTTC 1 cut(s) 650
MspI CCGG 4 cut(s) 432, 634, 655, 738
MspR9I CCNGG 2 cut(s) 286, 758
MunI CAATTG 2 cut(s) 81, 338
MvaI CCWGG 2 cut(s) 286, 758
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 254, 327, 437, 610
NdeII GATC 5 cut(s) 128, 148, 616, 676, 684
NlaIII CATG 4 cut(s) 215, 269, 330, 427
NlaIV GGNNCC 5 cut(s) 26, 140, 141, 142, 745
NspI RCATGY 2 cut(s) 269, 330
PaeI GCATGC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 650
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 460, 702, 753
Psp6I CCWGG 2 cut(s) 284, 756
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 284, 756
PspN4I GGNNCC 5 cut(s) 26, 140, 141, 142, 745
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 4 cut(s) 139, 140, 165, 429
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 10
SatI GCNGC 3 cut(s) 459, 701, 752
Sau3AI GATC 5 cut(s) 128, 148, 616, 676, 684
Sau96I GGNCC 4 cut(s) 139, 140, 165, 429
ScrFI CCNGG 2 cut(s) 286, 758
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 22, 393, 402, 414, 517, 615, 709
SfaNI GCATC 2 cut(s) 235, 352
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 165
SphI GCATGC 1 cut(s) 269
Sse9I AATT 5 cut(s) 81, 206, 338, 478, 646
SsiI CCGC 3 cut(s) 471, 700, 752
SspMI CTAG 3 cut(s) 39, 242, 704
StyD4I CCNGG 2 cut(s) 284, 756
TaaI ACNGT 3 cut(s) 278, 547, 783
TaqI TCGA 1 cut(s) 360
TasI AATT 5 cut(s) 81, 206, 338, 478, 646
TauI GCSGC 2 cut(s) 703, 754
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 736
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 2 cut(s) 269, 330
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 3 cut(s) 39, 242, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.