FvH4_4g24640

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000168
Physical Location & Seq
Reverse (-)
26730659 .. 26732675
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24640.t1

Sequence Viewer

Length: 744 bp
ATGATCAATCAAAGGTTGGAATCCAGAAAAGTGCAAGATTATATTTCGACTAATGATATGTTGGATACTCTTATAAACATGAGTGAAGAGAAGAATGAGGAAATGGACAAGATCGAAGTTGAGAATTTGTTTCTGGACTTGATTAGTGCGGGGACAGATACAACTTCAGCCACAATGGAATGGGCAATGGCCGAGCTTCTCCACAGTCCAGAGAAACTTGTAAAAGCTCAAGCGGAGCTAGACCAAGTAATTGGGAAAGGAAAACCAATCGAGGAATCGGACATTGCTCGACTTCCTTACTTGCAAGCAGTAATCAAAGAAACATTCCGGATGCACCCAACAGTGCCATTGCTACTTCCACGTAAAGCCGGTGCAGAAGCAGAAATCGGAGGGTACATTATTCCTAAGGGTGCACAAGTTCTGATCAATGCTTGGGCAGTAGGCAGAGATTCCAGTGTTTGGGACAATCCAAACTTGTTTATGCCGGAAAGATTTTTGGGGTCCGAAATCGATGTTTTAGGAAGAAACTTTGAGCTTATTCCCTTTGGTGGTGGGAGGAGAATATGTCCGGGTATGCCATTGGCTATGAGAATGTTGCCATTGATGTTGGGTTCAGTTCTCAACTGTTTTGAATGGAAGCTTGAAGATGGAGTTGTACCTGAGACTATGAACATGGAAGACAAGTTTGGCCTTACTTTACAAATGGCTCACTCTCTGAGGGCTGTTGCCATCAATTTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

248

Amino Acids

27.67

Weight (kDa)

4.8

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 8 - 230 3e-73 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 327
AciI CCGC 2 cut(s) 149, 233
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 2 cut(s) 395, 657
AfiI CCNNNNNNNGG 2 cut(s) 459, 548
AgsI TTSAA 2 cut(s) 632, 644
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AluBI AGCT 5 cut(s) 196, 227, 238, 535, 640
AluI AGCT 5 cut(s) 196, 227, 238, 535, 640
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 656
Alw44I GTGCAC 1 cut(s) 411
Aor13HI TCCGGA 1 cut(s) 327
AoxI GGCC 2 cut(s) 189, 688
ApaLI GTGCAC 1 cut(s) 411
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 501
AsuC2I CCSGG 1 cut(s) 570
AvaII GGWCC 1 cut(s) 501
AxyI CCTNAGG 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 415
BccI CCATC 2 cut(s) 641, 737
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 2 cut(s) 3, 423
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 239
BfuI GTATCC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 570
Bsa29I ATCGAT 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 548
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 453
Bse21I CCTNAGG 1 cut(s) 405
Bse3DI GCAATG 3 cut(s) 192, 282, 347
BseAI TCCGGA 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 510
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 459, 548
BseMI GCAATG 3 cut(s) 192, 282, 347
BseMII CTCAG 2 cut(s) 651, 707
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 1 cut(s) 571
BseSI GKGCMC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 2 cut(s) 191, 690
BshVI ATCGAT 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 4 cut(s) 328, 369, 485, 569
BslFI GGGAC 2 cut(s) 166, 476
BslI CCNNNNNNNGG 2 cut(s) 459, 548
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 2 cut(s) 166, 476
BsnI GGCC 2 cut(s) 191, 690
Bsp1286I GDGCHC 1 cut(s) 415
Bsp13I TCCGGA 1 cut(s) 327
Bsp143I GATC 3 cut(s) 3, 111, 423
BspACI CCGC 2 cut(s) 149, 233
BspANI GGCC 2 cut(s) 191, 690
BspCNI CTCAG 2 cut(s) 652, 708
BspDI ATCGAT 1 cut(s) 510
BspEI TCCGGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 502
BsrDI GCAATG 3 cut(s) 192, 282, 347
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 368
BssMI GATC 3 cut(s) 3, 111, 423
Bst4CI ACNGT 3 cut(s) 206, 343, 626
Bst6I CTCTTC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 405, 660, 716
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 3 cut(s) 6, 114, 426
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 3 cut(s) 3, 111, 423
BstSCI CCNGG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 510
Bsu36I CCTNAGG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 191, 690
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 348, 460
Cac8I GCNNGC 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 510
Csp6I GTAC 2 cut(s) 394, 656
CviAII CATG 2 cut(s) 79, 673
CviQI GTAC 2 cut(s) 394, 656
DdeI CTNAG 3 cut(s) 405, 660, 716
DpnI GATC 3 cut(s) 5, 113, 425
DpnII GATC 3 cut(s) 3, 111, 423
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 405
FaeI CATG 2 cut(s) 82, 676
FaqI GGGAC 2 cut(s) 166, 476
FatI CATG 2 cut(s) 78, 672
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 2 cut(s) 3, 423
FokI GGATG 1 cut(s) 343
FspBI CTAG 1 cut(s) 239
HaeIII GGCC 2 cut(s) 191, 690
HapII CCGG 4 cut(s) 328, 369, 485, 569
Hin1II CATG 2 cut(s) 82, 676
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 3 cut(s) 20, 275, 449
HpaII CCGG 4 cut(s) 328, 369, 485, 569
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 5 cut(s) 280, 389, 423, 505, 717
Hpy188III TCNNGA 4 cut(s) 24, 134, 209, 328
Hpy8I GTNNAC 1 cut(s) 413
HpyCH4III ACNGT 3 cut(s) 206, 343, 626
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 5 cut(s) 34, 304, 334, 374, 413
HpyF3I CTNAG 3 cut(s) 405, 660, 716
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 2 cut(s) 82, 676
Kpn2I TCCGGA 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 3, 423
Kzo9I GATC 3 cut(s) 3, 111, 423
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 37, 119, 222, 341, 382, 466, 498, 582, 672
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 239
MaeII ACGT 1 cut(s) 361
MalI GATC 3 cut(s) 5, 113, 425
MboI GATC 3 cut(s) 3, 111, 423
MboII GAAGA 5 cut(s) 98, 103, 534, 656, 689
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 3 cut(s) 124, 249, 733
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 5 cut(s) 91, 265, 383, 549, 711
MroI TCCGGA 1 cut(s) 327
MspI CCGG 4 cut(s) 328, 369, 485, 569
MspR9I CCNGG 1 cut(s) 570
NciI CCSGG 1 cut(s) 570
NdeII GATC 3 cut(s) 3, 111, 423
NlaIII CATG 2 cut(s) 82, 676
NlaIV GGNNCC 1 cut(s) 502
NmeAIII GCCGAG 1 cut(s) 217
PfeI GAWTC 3 cut(s) 20, 275, 449
PflMI CCANNNNNTGG 1 cut(s) 459
Ppu21I YACGTR 1 cut(s) 362
PsiI TTATAA 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 501
RsaI GTAC 2 cut(s) 395, 657
RsaNI GTAC 2 cut(s) 394, 656
Sau3AI GATC 3 cut(s) 3, 111, 423
Sau96I GGNCC 1 cut(s) 501
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 415
SetI ASST 8 cut(s) 17, 198, 229, 240, 364, 537, 642, 661
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 124, 249, 733
SsiI CCGC 2 cut(s) 149, 233
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 3 cut(s) 206, 343, 626
TaiI ACGT 1 cut(s) 364
TaqI TCGA 5 cut(s) 47, 114, 270, 289, 510
TasI AATT 3 cut(s) 124, 249, 733
TfiI GAWTC 3 cut(s) 20, 275, 449
TscAI CASTG 2 cut(s) 348, 460
TspDTI ATGAA 1 cut(s) 683
TspRI CASTG 2 cut(s) 348, 460
Van91I CCANNNNNTGG 1 cut(s) 459
VneI GTGCAC 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.