pycom16g09820

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
6697242 .. 6697863
622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09820.1

Sequence Viewer

Length: 576 bp
ATGGACTTTTTGAGTTGCATGATATTGTTCCTCGTAATGATCTGGATCTCTGTTCATGCTATCTATTATTCGTTTGCGGGAAGAAGGTCAAGTCCCACTATGCTTCCACCAGGACCAAACCCACTTTCCTTCATTGGCAATCCTTTGGAGCTTGGTAGCATACCCCACATCTCTCTCACTAACCTTTCACAACGCCATGGCCCCAATTTGTCTTTACGACTTGGACATGTTACGACGGTTGTAGTTTCTTCATCAATCATAGCTAAAGAAATATATGCCATCCAGGCCTGTGACCATGCTAGGTACGGCATGCCCTGGATACCGGTTTCAGCGGCATGGAGAAACCTTCGAAAAATATGCAACTCGCAATTGTTTGCCACCAAAGTTCTCGACGCCAACCAAGCCAACCGTCGCGTAAAAGTTCAAGAGCTCATATCCGAGGTCAACGAAAGCGTTTTAAAAGGTGAAGCCGTTGATGTTAGAAGTGCTGATTTCAAAACTACGCTCAACTTGATGTCGCGTACCGTATTCTCTGTGGATTTGGCGGACCCGAATAGTGATACGGCTAGAGAGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.17

Weight (kDa)

8.88

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 184 1.4e-10 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 414, 520
AciI CCGC 3 cut(s) 77, 332, 545
AclWI GGATC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 2 cut(s) 305, 523
AflIII ACRYGT 1 cut(s) 226
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 425, 496
AjnI CCWGG 3 cut(s) 109, 282, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AluBI AGCT 3 cut(s) 151, 263, 430
AluI AGCT 3 cut(s) 151, 263, 430
Alw21I GWGCWC 1 cut(s) 432
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 199, 285
AsiGI ACCGGT 1 cut(s) 322
AspS9I GGNCC 3 cut(s) 113, 200, 547
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 349
AvaII GGWCC 2 cut(s) 113, 547
BanII GRGCYC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 432
BccI CCATC 1 cut(s) 287
BceAI ACGGC 2 cut(s) 322, 455
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 3 cut(s) 111, 284, 316
BciVI GTATCC 1 cut(s) 312
BfaI CTAG 2 cut(s) 300, 567
BfuI GTATCC 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 3 cut(s) 111, 284, 316
Bme18I GGWCC 2 cut(s) 113, 547
BmgT120I GGNCC 3 cut(s) 113, 200, 547
BmiI GGNNCC 2 cut(s) 202, 549
BmrFI CCNGG 3 cut(s) 111, 284, 316
Bpu14I TTCGAA 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 196, 314, 438
BsaWI WCCGGW 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 3 cut(s) 111, 284, 316
BseDI CCNNGG 3 cut(s) 196, 314, 438
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 414, 520
BshFI GGCC 2 cut(s) 201, 287
BshTI ACCGGT 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 201, 287
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 39, 45
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 3 cut(s) 77, 332, 545
BspANI GGCC 2 cut(s) 201, 287
BspFNI CGCG 2 cut(s) 414, 520
BspLI GGNNCC 2 cut(s) 202, 549
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 196, 314, 438
BssMI GATC 2 cut(s) 39, 45
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 3 cut(s) 111, 284, 316
Bst4CI ACNGT 3 cut(s) 238, 410, 526
BstACI GRCGYC 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 311
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 2 cut(s) 414, 520
BstKTI GATC 2 cut(s) 42, 48
BstMBI GATC 2 cut(s) 39, 45
BstMWI GCNNNNNNNGC 2 cut(s) 284, 401
BstNI CCWGG 3 cut(s) 111, 284, 316
BstNSI RCATGY 2 cut(s) 230, 313
BstSCI CCNGG 3 cut(s) 109, 282, 314
BstUI CGCG 2 cut(s) 414, 520
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 201, 287
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 3 cut(s) 113, 200, 547
CseI GACGC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 304, 522
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 7 cut(s) 19, 56, 197, 227, 296, 310, 336
CviJI RGCY 8 cut(s) 151, 201, 263, 287, 404, 430, 470, 566
CviKI_1 RGCY 8 cut(s) 151, 201, 263, 287, 404, 430, 470, 566
CviQI GTAC 2 cut(s) 304, 522
DpnI GATC 2 cut(s) 41, 47
DpnII GATC 2 cut(s) 39, 45
DraI TTTAAA 1 cut(s) 459
EciI GGCGGA 1 cut(s) 560
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 113, 547
Eco53kI GAGCTC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 3 cut(s) 109, 282, 314
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 7 cut(s) 22, 59, 200, 230, 299, 313, 339
FaqI GGGAC 1 cut(s) 78
FatI CATG 7 cut(s) 18, 55, 196, 226, 295, 309, 335
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 2 cut(s) 300, 567
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 2 cut(s) 201, 287
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 7 cut(s) 22, 59, 200, 230, 299, 313, 339
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 3 cut(s) 43, 389, 425
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 3 cut(s) 238, 395, 414
HpyAV CCTTC 3 cut(s) 78, 139, 356
HpyCH4III ACNGT 3 cut(s) 238, 410, 526
HpyCH4V TGCA 2 cut(s) 18, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 401
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 7 cut(s) 22, 59, 200, 230, 299, 313, 339
Kzo9I GATC 2 cut(s) 39, 45
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 9 cut(s) 28, 96, 123, 269, 296, 301, 301, 328, 336
MaeI CTAG 2 cut(s) 300, 567
MaeIII GTNAC 2 cut(s) 229, 290
MalI GATC 2 cut(s) 41, 47
MboI GATC 2 cut(s) 39, 45
MboII GAAGA 2 cut(s) 93, 240
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 2 cut(s) 205, 368
MnlI CCTC 2 cut(s) 41, 433
MseI TTAA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 111, 284, 316
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 3 cut(s) 111, 284, 316
MvnI CGCG 2 cut(s) 414, 520
MwoI GCNNNNNNNGC 2 cut(s) 284, 401
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 39, 45
NlaIII CATG 7 cut(s) 22, 59, 200, 230, 299, 313, 339
NlaIV GGNNCC 2 cut(s) 202, 549
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 230, 313
NspV TTCGAA 1 cut(s) 349
PaeI GCATGC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 287
PciI ACATGT 1 cut(s) 226
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 1 cut(s) 334
PscI ACATGT 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 3 cut(s) 109, 282, 314
PspGI CCWGG 3 cut(s) 109, 282, 314
PspN4I GGNNCC 2 cut(s) 202, 549
PspPI GGNCC 3 cut(s) 113, 200, 547
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 305, 523
RsaNI GTAC 2 cut(s) 304, 522
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 39, 45
Sau96I GGNCC 3 cut(s) 113, 200, 547
ScrFI CCNGG 3 cut(s) 111, 284, 316
SduI GDGCHC 1 cut(s) 432
SetI ASST 9 cut(s) 89, 153, 186, 265, 305, 348, 432, 444, 466
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 2 cut(s) 113, 547
SphI GCATGC 1 cut(s) 313
Sse9I AATT 2 cut(s) 205, 368
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 3 cut(s) 77, 332, 545
SspMI CTAG 2 cut(s) 300, 567
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 109, 282, 314
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 238, 410, 526
TaqI TCGA 2 cut(s) 349, 390
TasI AATT 2 cut(s) 205, 368
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 44, 121, 240
VpaK11BI GGWCC 2 cut(s) 113, 547
XceI RCATGY 2 cut(s) 230, 313
XspI CTAG 2 cut(s) 300, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.