Rmu_co8420493.1_g000001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8420493.1
OG0000168
Physical Location & Seq
Forward (+)
28 .. 1232
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8420493.1_g000001.1.cds

Sequence Viewer

Length: 1026 bp
atggtaaagggtttgtcagtagatattggaaaggctgctttcaaaactgcactcaatttgctgtcgagaactattttctctgtggatttggctgatgactcgagtagtagtagtgagatgactagagagttcaagaagattgttaatggtatgttggaagaggctgggaagccgaatttgggggactattttcctgtgcttaagaatattgatccccaaggcataaggcgacgctttacgaattactacaaaaagatgttaggcttgattgaatcagtgatcagtcaacggttggaatgtagaaaaggggatgattatgtgacaagtaatgatatgttggatactcttataaacctcagtgaagagaaaaatgaggaggatttgaagaactccgaagtagttgaaaatttgtttgtggctctatttgctgcggggacagatacaacttcagccacattggaatgggcaatggcggagctactacacaacccagagagcctttctaaagctcaagaagagctagatcaaatggttggaaaaggaaaaccaatcgaggaatccgacattgctagactcccttacttacaagcaataatcatggaaaccttccggttgcacccagtggctccattgctactgccacgaaaagctgaaacagatgtagaaatagggggctacattgtcccgaagggtgcacaagttctagttaatgtttgggccataggccgagacgccggcatttgggacagtccaaactcttttatgccggagaggttcttaggattacccaaccaaattgatgttatgggaaaaaactttgggcttattccatttggtggtggaaggagaatctgtccaggtttgccattggcaatgagaatgttgcacttgatgttgggttcgctcatcaactgcttcgattggaagcttgaagatggggttgtacctgagactatgaacatggaagacaagtttggcctcactatacaaatggctcagcctctcaaagctgttccctactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

341

Amino Acids

37.92

Weight (kDa)

4.97

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 836
AciI CCGC 2 cut(s) 431, 473
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 175, 406
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 732
AdeI CACNNNGTG 1 cut(s) 622
AfaI GTAC 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 179, 741, 836
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 6 cut(s) 43, 133, 272, 385, 404, 932
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 4 cut(s) 161, 193, 957, 989
AluBI AGCT 6 cut(s) 478, 509, 520, 650, 928, 1010
AluI AGCT 6 cut(s) 478, 509, 520, 650, 928, 1010
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 723, 944
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 3 cut(s) 717, 724, 976
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 2 cut(s) 35, 428
ApoI RAATTY 2 cut(s) 175, 406
AspS9I GGNCC 1 cut(s) 717
AvaI CYCGRG 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 2 cut(s) 22, 415
BccI CCATC 1 cut(s) 929
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 723, 944
BfaI CTAG 4 cut(s) 123, 521, 570, 704
BfrI CTTAAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 2 cut(s) 36, 429
BlpI GCTNAGC 1 cut(s) 996
BlsI GCNGC 2 cut(s) 37, 430
Bme1390I CCNGG 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 858
BmrI ACTGGG 1 cut(s) 614
BmuI ACTGGG 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 972
Bpu1102I GCTNAGC 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 741, 836
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 4 cut(s) 474, 564, 629, 879
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 179, 741, 836
BseMI GCAATG 4 cut(s) 474, 564, 629, 879
BseMII CTCAG 3 cut(s) 370, 939, 1010
BseNI ACTGG 1 cut(s) 620
BseRI GAGGAG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 2 cut(s) 22, 415
BseYI CCCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 3 cut(s) 719, 726, 978
BsiHKAI GWGCWC 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 3 cut(s) 610, 735, 767
BslFI GGGAC 4 cut(s) 197, 448, 668, 758
BslI CCNNNNNNNGG 3 cut(s) 179, 741, 836
BsmAI GTCTC 2 cut(s) 723, 944
BsmBI CGTCTC 1 cut(s) 723
BsmFI GGGAC 4 cut(s) 197, 448, 668, 758
BsnI GGCC 3 cut(s) 719, 726, 978
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 211, 279, 523
Bsp1720I GCTNAGC 1 cut(s) 996
BspACI CCGC 2 cut(s) 431, 473
BspANI GGCC 3 cut(s) 719, 726, 978
BspCNI CTCAG 3 cut(s) 369, 940, 1009
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 4 cut(s) 474, 564, 629, 879
BsrFI RCCGGY 1 cut(s) 734
BsrI ACTGG 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 3 cut(s) 211, 279, 523
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 291, 749
Bst6I CTCTTC 3 cut(s) 153, 357, 510
BstACI GRCGYC 1 cut(s) 732
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 736
BstDEI CTNAG 4 cut(s) 356, 778, 948, 996
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 214, 282, 526
BstMAI GTCTC 2 cut(s) 723, 944
BstMBI GATC 3 cut(s) 211, 279, 523
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 856
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 2 cut(s) 22, 415
BstV2I GAAGAC 1 cut(s) 972
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 719, 726, 978
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 282, 364, 627
Cac8I GCNNGC 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 1 cut(s) 717
CseI GACGC 2 cut(s) 240, 740
Csp6I GTAC 1 cut(s) 944
CviAII CATG 2 cut(s) 598, 961
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 4 cut(s) 356, 778, 948, 996
DpnI GATC 3 cut(s) 213, 281, 525
DpnII GATC 3 cut(s) 211, 279, 523
DraIII CACNNNGTG 1 cut(s) 622
Eam1104I CTCTTC 3 cut(s) 153, 357, 510
EarI CTCTTC 3 cut(s) 153, 357, 510
EciI GGCGGA 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 2 cut(s) 601, 964
FaqI GGGAC 4 cut(s) 197, 448, 668, 758
FatI CATG 2 cut(s) 597, 960
FauI CCCGC 1 cut(s) 424
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 36, 429
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 36, 429
FspBI CTAG 4 cut(s) 123, 521, 570, 704
GluI GCNGC 2 cut(s) 36, 429
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 719, 726, 978
HapII CCGG 3 cut(s) 610, 735, 767
HgaI GACGC 2 cut(s) 240, 740
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 2 cut(s) 601, 964
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 5 cut(s) 98, 272, 557, 573, 849
HpaII CCGG 3 cut(s) 610, 735, 767
Hpy166II GTNNAC 2 cut(s) 287, 695
Hpy188I TCNGA 2 cut(s) 394, 562
Hpy188III TCNNGA 4 cut(s) 66, 133, 512, 685
Hpy8I GTNNAC 2 cut(s) 287, 695
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 616, 682, 837
HpyCH4III ACNGT 2 cut(s) 291, 749
HpyCH4V TGCA 4 cut(s) 50, 616, 695, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 356, 778, 948, 996
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 2 cut(s) 601, 964
KroI GCCGGC 1 cut(s) 734
KroNI GCCGGC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 211, 279, 523
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 475, 631
Lsp1109I GCAGC 2 cut(s) 22, 415
MaeI CTAG 4 cut(s) 123, 521, 570, 704
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 213, 281, 525
MboI GATC 3 cut(s) 211, 279, 523
MboII GAAGA 7 cut(s) 148, 170, 374, 397, 527, 944, 977
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 5 cut(s) 55, 175, 241, 406, 795
MlyI GAGTC 2 cut(s) 92, 567
MmeI TCCRAC 5 cut(s) 135, 273, 318, 514, 585
MnlI CCTC 8 cut(s) 154, 365, 367, 370, 547, 765, 989, 1011
MroNI GCCGGC 1 cut(s) 734
MseI TTAA 3 cut(s) 144, 201, 708
MslI CAYNNNNRTG 1 cut(s) 460
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 3 cut(s) 610, 735, 767
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 1 cut(s) 425
NaeI GCCGGC 1 cut(s) 736
NdeII GATC 3 cut(s) 211, 279, 523
NgoMIV GCCGGC 1 cut(s) 734
NlaIII CATG 2 cut(s) 601, 964
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PdiI GCCGGC 1 cut(s) 736
PfeI GAWTC 3 cut(s) 272, 557, 849
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 2 cut(s) 37, 430
PleI GAGTC 2 cut(s) 92, 567
PpsI GAGTC 2 cut(s) 92, 567
PsiI TTATAA 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 717
PspXI VCTCGAGB 1 cut(s) 100
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 1 cut(s) 460
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 144, 201, 708
SatI GCNGC 2 cut(s) 36, 429
Sau3AI GATC 3 cut(s) 211, 279, 523
Sau96I GGNCC 1 cut(s) 717
SchI GAGTC 2 cut(s) 92, 567
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 1 cut(s) 697
Sfr274I CTCGAG 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 460
SmlI CTYRAG 3 cut(s) 100, 200, 510
SmoI CTYRAG 3 cut(s) 100, 200, 510
Sse9I AATT 5 cut(s) 55, 175, 241, 406, 795
SsiI CCGC 2 cut(s) 431, 473
SspI AATATT 1 cut(s) 208
SspMI CTAG 4 cut(s) 123, 521, 570, 704
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 291, 749
TaqI TCGA 4 cut(s) 65, 101, 552, 918
TasI AATT 5 cut(s) 55, 175, 241, 406, 795
TfiI GAWTC 3 cut(s) 272, 557, 849
Tru1I TTAA 3 cut(s) 144, 201, 708
Tru9I TTAA 3 cut(s) 144, 201, 708
TscAI CASTG 3 cut(s) 282, 364, 627
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 35, 428
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 971
TspRI CASTG 3 cut(s) 282, 364, 627
Van91I CCANNNNNTGG 1 cut(s) 836
Vha464I CTTAAG 1 cut(s) 200
VneI GTGCAC 1 cut(s) 693
XapI RAATTY 2 cut(s) 175, 406
XhoI CTCGAG 1 cut(s) 100
XspI CTAG 4 cut(s) 123, 521, 570, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.