pycom13g16080

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000168
Physical Location & Seq
Forward (+)
11838257 .. 11838736
480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16080.1

Sequence Viewer

Length: 480 bp
ATGTCTTTACAACTCGGCCAAATAACAACCGTGGTAATTTCTTCGTCAACCGTCGCCAAAGAAGTCCTCCGAACCCATGACCAACTCTTTTGCCACCGTAGCATCCCAGATGCGGTCCAAGCTTGTAAACATTCCAAGTACGGCATGCCTTGGATATCTGTTTCACCTGCATGGAGAAACCTTCGCAAAACATGTAACTCTCAACTGTTCACCCGAAAAATTCTCGACGCCAATCAAGCCAATCGTCACCTAAAAGTGCAAGAGCTCATATGGGACGTCAACAAAAGCGCTGTAAAAGGTGATGCGATTGATATCGGAAGGGCTGCTTTCAAAACTTCGCTCAATCTTCTATCGCGTACTGTCTTCTCTGTGGACTTAGCGGACACAGGCAGTGCGAGGGCAAGGGCAACTACTATTTACAAATATAAATTTTTATGCTTTGTGCCTTGTAATTGTACACTTTATAAGTTTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

160

Amino Acids

17.88

Weight (kDa)

9.76

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 127 3.6e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AarI CACCTGC 1 cut(s) 175
AatII GACGTC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 175
AccII CGCG 1 cut(s) 355
AciI CCGC 2 cut(s) 113, 380
AcoI YGGCCR 1 cut(s) 16
AcsI RAATTY 2 cut(s) 219, 428
AcyI GRCGYC 2 cut(s) 228, 276
AfaI GTAC 3 cut(s) 140, 358, 457
AfeI AGCGCT 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 2 cut(s) 122, 265
AluI AGCT 2 cut(s) 122, 265
Alw21I GWGCWC 1 cut(s) 267
Aor51HI AGCGCT 1 cut(s) 289
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 219, 428
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 4 cut(s) 156, 202, 239, 311
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 3 cut(s) 100, 111, 292
BpiI GAAGAC 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 311
BsaHI GRCGYC 2 cut(s) 228, 276
BsaJI CCNNGG 2 cut(s) 30, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 311
BseDI CCNNGG 2 cut(s) 30, 149
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 310
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 455
BspACI CCGC 2 cut(s) 113, 380
BspANI GGCC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 30, 149
BssNI GRCGYC 2 cut(s) 228, 276
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 5 cut(s) 31, 52, 98, 207, 361
BstACI GRCGYC 2 cut(s) 228, 276
BstAUI TGTACA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 355
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstMWI GCNNNNNNNGC 3 cut(s) 99, 119, 236
BstNSI RCATGY 2 cut(s) 148, 195
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 146
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 139, 357, 456
CviAII CATG 4 cut(s) 77, 145, 171, 192
CviJI RGCY 5 cut(s) 18, 122, 239, 265, 323
CviKI_1 RGCY 5 cut(s) 18, 122, 239, 265, 323
CviQI GTAC 3 cut(s) 139, 357, 456
DdeI CTNAG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 2 cut(s) 156, 313
Eco47I GGWCC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 265
EcoRV GATATC 2 cut(s) 156, 313
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 4 cut(s) 80, 148, 174, 195
FaiI YATR 9 cut(s) 78, 146, 172, 193, 269, 271, 426, 436, 465
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FaqI GGGAC 1 cut(s) 287
FatI CATG 4 cut(s) 76, 144, 170, 191
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 324
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 1 cut(s) 18
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 2 cut(s) 228, 276
Hin1II CATG 4 cut(s) 80, 148, 174, 195
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 2 cut(s) 48, 280
HindII GTYRAC 2 cut(s) 48, 280
HindIII AAGCTT 1 cut(s) 120
HphI GGTGA 4 cut(s) 156, 202, 239, 311
Hpy166II GTNNAC 6 cut(s) 48, 128, 210, 280, 373, 458
Hpy188I TCNGA 2 cut(s) 71, 317
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 6 cut(s) 48, 128, 210, 280, 373, 458
Hpy99I CGWCG 2 cut(s) 56, 230
HpyAV CCTTC 2 cut(s) 191, 312
HpyCH4III ACNGT 5 cut(s) 31, 52, 98, 207, 361
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 170, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 119, 236
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 2 cut(s) 228, 276
Hsp92II CATG 4 cut(s) 80, 148, 174, 195
HspAI GCGC 1 cut(s) 288
LpnPI CCDG 3 cut(s) 120, 180, 372
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 3 cut(s) 100, 111, 292
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 194, 245
MboII GAAGA 3 cut(s) 33, 338, 355
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 36, 219, 428, 451
MnlI CCTC 2 cut(s) 77, 390
MseI TTAA 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 169
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 99, 119, 236
NdeI CATATG 1 cut(s) 269
NlaIII CATG 4 cut(s) 80, 148, 174, 195
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 2 cut(s) 148, 195
PaeI GCATGC 1 cut(s) 148
PaqCI CACCTGC 1 cut(s) 175
PciI ACATGT 1 cut(s) 191
PkrI GCNGC 1 cut(s) 325
PscI ACATGT 1 cut(s) 191
PsiI TTATAA 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 3 cut(s) 140, 358, 457
RsaNI GTAC 3 cut(s) 139, 357, 456
RseI CAYNNNNRTG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 267
SetI ASST 7 cut(s) 124, 169, 183, 252, 267, 279, 301
SfaNI GCATC 3 cut(s) 100, 111, 292
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 169
SphI GCATGC 1 cut(s) 148
Sse9I AATT 4 cut(s) 36, 219, 428, 451
SsiI CCGC 2 cut(s) 113, 380
SstI GAGCTC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 5 cut(s) 31, 52, 98, 207, 361
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 36, 219, 428, 451
TatI WGTACW 1 cut(s) 455
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 245
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 219, 428
XceI RCATGY 2 cut(s) 148, 195
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.