RLG00000007007

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000168
Physical Location & Seq
Reverse (-)
12650280 .. 12651020
741 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007007

Sequence Viewer

Length: 741 bp
ATGGAGTTCTTGAGCTTCATGCTCTTATGTCTTGGCTTTGCCTGGATCTGCAGCCGAGCCTTGCTTTCACTTGCAATAAAAAGCAAAGCCATACCTAGAAGGCTTCTTCCACCAGGACCAAAGCCATTTCCACTTATCGGAAATCTCCTTGAGCTCGGAGACAAACCCCACCACTCCCTCGCTAAACTTTCCAAACGCTACGGCCCCATAATCAGTTTACAACTTGGCCGAGTAACCACAGTTGTAGTTTCCTCACCAACTCTAGCCAAAGATATCCTCCAAACCCATGACCAAATCCTCTGCAACCGAAACCTCCCAGATGGTGTCCACGCCTGCAATCACTGCGAGTACAGCTTGCCCTGGCTACCTGTTTCATCAAAATGGAGAAACCTTCGCAAAATATGCAACTCCTATTTGTTTGCCACCAAAGTTTTGGATGCCAACAAAGACAACCGGCGCGTGAAGGTGCAGCAGCTCATTGATGATGTTGATGAAAGCATGAAGGCGGGTAATGCAGTCGACATCGGAAGGGCTGCTTTCGCAACTACGCTGAATCTGTTGTCCCGGACTATCTTCTCGGTTGATCTAGCTGACCCGAGTAGCGAGACGGCTAGGAAGTTCAAGGACAATATTAGGGGTATGATGGAAGATGTGGGGAAACCAAACTTGGTGGACTTTTTTCCTTTGCTTAGGAAGCTAGACCCCCAAGGAATAAGGCGGCGACTTTTTTCCTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

247

Amino Acids

27.59

Weight (kDa)

9.72

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 242 1.6e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 519
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 506, 718
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 3 cut(s) 41, 112, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 6 cut(s) 15, 154, 354, 475, 590, 697
AluI AGCT 6 cut(s) 15, 154, 354, 475, 590, 697
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 153, 599
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 2 cut(s) 202, 226
ApeKI GCWGC 4 cut(s) 51, 469, 472, 533
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 2 cut(s) 116, 203
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 63, 481, 484, 520
BccI CCATC 2 cut(s) 314, 637
BceAI ACGGC 2 cut(s) 217, 624
BciT130I CCWGG 3 cut(s) 43, 114, 361
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 153, 599
BfaI CTAG 5 cut(s) 96, 263, 587, 612, 698
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 5 cut(s) 52, 470, 473, 534, 719
BlsI GCNGC 5 cut(s) 53, 471, 474, 535, 720
Bme1390I CCNGG 4 cut(s) 43, 114, 361, 565
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 116, 203
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 4 cut(s) 43, 114, 361, 565
BmsI GCATC 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 689
BpuEI CTTGAG 2 cut(s) 31, 170
BpuMI CCSGG 1 cut(s) 565
BsaJI CCNNGG 2 cut(s) 359, 706
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 453
BseBI CCWGG 3 cut(s) 43, 114, 361
BseDI CCNNGG 2 cut(s) 359, 706
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 137
BseXI GCAGC 4 cut(s) 63, 481, 484, 520
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 2 cut(s) 204, 228
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 2 cut(s) 454, 565
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 153, 599
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 2 cut(s) 204, 228
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 45, 583
BspACI CCGC 2 cut(s) 506, 718
BspANI GGCC 2 cut(s) 204, 228
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 359, 706
BssMI GATC 2 cut(s) 45, 583
BssT1I CCWWGG 1 cut(s) 706
Bst2UI CCWGG 3 cut(s) 43, 114, 361
Bst4CI ACNGT 1 cut(s) 241
BstAPI GCANNNNNTGC 2 cut(s) 342, 402
BstC8I GCNNGC 2 cut(s) 334, 356
BstDEI CTNAG 2 cut(s) 689, 738
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 459
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 2 cut(s) 48, 586
BstMAI GTCTC 2 cut(s) 153, 599
BstMBI GATC 2 cut(s) 45, 583
BstMWI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
BstNI CCWGG 3 cut(s) 43, 114, 361
BstSCI CCNGG 4 cut(s) 41, 112, 359, 563
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 4 cut(s) 63, 481, 484, 520
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 204, 228
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 334, 356
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 116, 203
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 3 cut(s) 19, 287, 499
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 689, 738
DpnI GATC 2 cut(s) 47, 585
DpnII GATC 2 cut(s) 45, 583
EaeI YGGCCR 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 41, 112, 359
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 3 cut(s) 22, 290, 502
FaiI YATR 8 cut(s) 20, 28, 92, 209, 288, 403, 500, 641
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 1 cut(s) 547
FatI CATG 3 cut(s) 18, 286, 498
FauI CCCGC 1 cut(s) 499
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 5 cut(s) 52, 470, 473, 534, 719
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 52, 470, 473, 534, 719
FspBI CTAG 5 cut(s) 96, 263, 587, 612, 698
GlaI GCGC 1 cut(s) 458
GluI GCNGC 5 cut(s) 52, 470, 473, 534, 719
HaeIII GGCC 2 cut(s) 204, 228
HapII CCGG 2 cut(s) 454, 565
HhaI GCGC 1 cut(s) 459
Hin1II CATG 3 cut(s) 22, 290, 502
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 1 cut(s) 553
HpaII CCGG 2 cut(s) 454, 565
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 4 cut(s) 218, 328, 520, 673
Hpy188I TCNGA 3 cut(s) 140, 158, 527
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 4 cut(s) 218, 328, 520, 673
HpyAV CCTTC 5 cut(s) 93, 401, 457, 496, 522
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 7 cut(s) 51, 74, 303, 336, 405, 469, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
HpyF3I CTNAG 2 cut(s) 689, 738
Hsp92II CATG 3 cut(s) 22, 290, 502
HspAI GCGC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 45, 583
Lsp1109I GCAGC 4 cut(s) 63, 481, 484, 520
LweI GCATC 1 cut(s) 427
MaeI CTAG 5 cut(s) 96, 263, 587, 612, 698
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 47, 585
MboI GATC 2 cut(s) 45, 583
MboII GAAGA 3 cut(s) 98, 565, 659
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 156
MnlI CCTC 5 cut(s) 188, 262, 287, 308, 323
MslI CAYNNNNRTG 1 cut(s) 379
MspI CCGG 2 cut(s) 454, 565
MspR9I CCNGG 4 cut(s) 43, 114, 361, 565
MvaI CCWGG 3 cut(s) 43, 114, 361
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 6 cut(s) 342, 351, 402, 512, 539, 694
NciI CCSGG 1 cut(s) 565
NdeII GATC 2 cut(s) 45, 583
NlaIII CATG 3 cut(s) 22, 290, 502
NlaIV GGNNCC 1 cut(s) 205
NmeAIII GCCGAG 2 cut(s) 80, 254
PfeI GAWTC 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 563
PkrI GCNGC 5 cut(s) 53, 471, 474, 535, 720
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 41, 112, 359
PspGI CCWGG 3 cut(s) 41, 112, 359
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 116, 203
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 518
SatI GCNGC 5 cut(s) 52, 470, 473, 534, 719
Sau3AI GATC 2 cut(s) 45, 583
Sau96I GGNCC 2 cut(s) 116, 203
ScrFI CCNGG 4 cut(s) 43, 114, 361, 565
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 2 cut(s) 10, 149
SmoI CTYRAG 2 cut(s) 10, 149
SsiI CCGC 2 cut(s) 506, 718
SspI AATATT 1 cut(s) 631
SspMI CTAG 5 cut(s) 96, 263, 587, 612, 698
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 4 cut(s) 41, 112, 359, 563
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 519
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 1 cut(s) 553
TscAI CASTG 1 cut(s) 347
TseI GCWGC 4 cut(s) 51, 469, 472, 533
TspDTI ATGAA 4 cut(s) 7, 363, 507, 515
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 5 cut(s) 96, 263, 587, 612, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.