Rw0G015620

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00722
Physical Location & Seq
Forward (+)
12103 .. 14043
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015620.1

Sequence Viewer

Length: 1218 bp
ATGGATTTCTTGAATTGTATAATAGGTCTTTGTTTTGCCTGGATCACCAGCCAAGCGTTCTATCGTTTTGCAAGAAGAAGCAAAGCTATACCCAGAAAGCTTCTTCCACCAGGACCAAAGTCATTTCCACTTGTTGGGAATCTGTTTGAGCTTGGAGACAAACCCCACCTCTCACTTACTAATCTTTCCCAACGCTATGGCCCCATCATAAGTTTGCAACTCGGCCGATTAACCACAGTAGTCATCTCTTCACCAACTCTGGCCAAAGAAATCCTCCGAACCCATGACCAAGTCTTCTGCAACCGACCCATCCGAGATGGAAACACGCCTGCAAACACAGCGAGTACAGCATGGCCTGGATTCCTGTGTCAGCAAGATGGAGAAATCTTCGCAAAATATGCAACTTGCAATTGTTTTCCCCAAAAGTTCTTGATGCCAACCAAGCCAATCGACGCGAAGCTAGGGAGTTCAAGGAGACTGTTTGGGGTATGTTTGAAGAGGACGGGGAAAACAAACTTGGCGGACTATTTTCCTTGCTTAGAAAACTGGACCCCCAAGATCCATCAAAGGCTGGAATCAAGAAAAGGGGACAGTTATATCACAACCAATGATATGTTGGATACACTTTTGAACATCAGTAAAGAGAAAATGGAGGATATGGACATGCTCGAAACAAAACATTTGTTTCTGTTCAGCCACATTGGAATGGGCAATGGCCGAGCTACTACGCAACCCAAAATTCTTTCAAAAGCTAAAGCGGAACTCCAGCAAGTGATTGGAAAGGGGAAAGTAGTTGAGGAATCAGACATTGCCCGACTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGAGTGCACCCAACAGTTCCATTGCTACTTCCCCGGAAAGCAGAAGCAAACATAGAAATTGGCGGGTATGTAATCCCGAAGGGTGCTCAAGTTCTAATAAATCCGGAGAGGTTCTTGGGATTAGAAAATCAAATTGATGTTATGGGAAAAAACTTCGAGCTTACTCCGTTTGGTGGTGGGAGAAGAATATGTCCCGGACTTCCATTGGCAATAAGAATGTTACACCTGATGCTGGGTTCACTAATTAACTGCTTTGATTGGAAACTTGAAGATGGAGTTGTACCCGAGACTATGAACATGGCAGAGAAGTTTGGCCTTACCCTACAAATGGCACAGCCACTAAGAGCTGTGCCCAAGAAGTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

405

Amino Acids

45.36

Weight (kDa)

9.43

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 105 3.2e-13 Cytochrome P450
p450 PF00067 243 - 318 4e-23 Cytochrome P450
p450 PF00067 318 - 390 5.1e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccII CGCG 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 955
AciI CCGC 3 cut(s) 521, 758, 915
AclWI GGATC 2 cut(s) 50, 553
AcoI YGGCCR 3 cut(s) 223, 261, 715
AcsI RAATTY 1 cut(s) 738
AfaI GTAC 2 cut(s) 346, 1134
AfiI CCNNNNNNNGG 4 cut(s) 134, 1025, 1084, 1180
AgsI TTSAA 6 cut(s) 13, 471, 496, 631, 747, 1121
AjnI CCWGG 3 cut(s) 38, 109, 355
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 8 cut(s) 86, 100, 151, 460, 722, 752, 1012, 1199
AluI AGCT 8 cut(s) 86, 100, 151, 460, 722, 752, 1012, 1199
Alw21I GWGCWC 2 cut(s) 861, 940
Alw26I GTCTC 3 cut(s) 150, 469, 1133
Alw44I GTGCAC 1 cut(s) 857
AlwI GGATC 2 cut(s) 50, 553
Ama87I CYCGRG 1 cut(s) 1136
Aor13HI TCCGGA 1 cut(s) 955
AoxI GGCC 6 cut(s) 199, 223, 261, 353, 715, 1165
ApaLI GTGCAC 1 cut(s) 857
ApoI RAATTY 1 cut(s) 738
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 3 cut(s) 113, 200, 549
AsuC2I CCSGG 2 cut(s) 886, 1047
AsuHPI GGTGA 2 cut(s) 37, 243
AvaI CYCGRG 1 cut(s) 1136
AvaII GGWCC 2 cut(s) 113, 549
BaeGI GKGCMC 2 cut(s) 861, 1206
BalI TGGCCA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 861, 940
BccI CCATC 6 cut(s) 212, 311, 317, 371, 570, 1118
BciT130I CCWGG 3 cut(s) 40, 111, 357
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 2 cut(s) 886, 1047
BcoDI GTCTC 3 cut(s) 150, 469, 1133
BfaI CTAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 613
Bme1390I CCNGG 5 cut(s) 40, 111, 357, 886, 1047
Bme18I GGWCC 2 cut(s) 113, 549
BmeT110I CYCGRG 1 cut(s) 1136
BmgT120I GGNCC 3 cut(s) 113, 200, 549
BmiI GGNNCC 2 cut(s) 202, 551
BmrFI CCNGG 5 cut(s) 40, 111, 357, 886, 1047
BmsI GCATC 2 cut(s) 423, 1071
BoxI GACNNNNGTC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 924
BpuMI CCSGG 2 cut(s) 886, 1047
BsaJI CCNNGG 1 cut(s) 884
BsaWI WCCGGW 1 cut(s) 955
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 1025, 1084, 1180
Bse1I ACTGG 1 cut(s) 551
Bse3DI GCAATG 3 cut(s) 718, 807, 872
BseAI TCCGGA 1 cut(s) 955
BseBI CCWGG 3 cut(s) 40, 111, 357
BseDI CCNNGG 1 cut(s) 884
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 134, 1025, 1084, 1180
BseMI GCAATG 3 cut(s) 718, 807, 872
BseNI ACTGG 1 cut(s) 551
BseSI GKGCMC 2 cut(s) 861, 1206
BseX3I CGGCCG 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 1084
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 6 cut(s) 201, 225, 263, 355, 717, 1167
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 861, 940
BsiHKCI CYCGRG 1 cut(s) 1136
BsiSI CCGG 3 cut(s) 886, 956, 1047
BslFI GGGAC 2 cut(s) 602, 1029
BslI CCNNNNNNNGG 4 cut(s) 134, 1025, 1084, 1180
BsmAI GTCTC 3 cut(s) 150, 469, 1133
BsmFI GGGAC 2 cut(s) 602, 1029
BsnI GGCC 6 cut(s) 201, 225, 263, 355, 717, 1167
BsoBI CYCGRG 1 cut(s) 1136
Bsp1286I GDGCHC 3 cut(s) 861, 940, 1206
Bsp13I TCCGGA 1 cut(s) 955
Bsp143I GATC 2 cut(s) 42, 558
BspACI CCGC 3 cut(s) 521, 758, 915
BspANI GGCC 6 cut(s) 201, 225, 263, 355, 717, 1167
BspEI TCCGGA 1 cut(s) 955
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 2 cut(s) 202, 551
BspPI GGATC 2 cut(s) 50, 553
BsrDI GCAATG 3 cut(s) 718, 807, 872
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 1 cut(s) 884
BssMI GATC 2 cut(s) 42, 558
Bst2UI CCWGG 3 cut(s) 40, 111, 357
Bst4CI ACNGT 4 cut(s) 238, 480, 593, 868
Bst6I CTCTTC 2 cut(s) 253, 491
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 538, 1193
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 2 cut(s) 45, 561
BstMAI GTCTC 3 cut(s) 150, 469, 1133
BstMBI GATC 2 cut(s) 42, 558
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 4 cut(s) 338, 347, 398, 442
BstNI CCWGG 3 cut(s) 40, 111, 357
BstNSI RCATGY 1 cut(s) 667
BstPAI GACNNNNGTC 1 cut(s) 118
BstSCI CCNGG 5 cut(s) 38, 109, 355, 884, 1045
BstSLI GKGCMC 2 cut(s) 861, 1206
BstUI CGCG 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 558
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 558
BstZI CGGCCG 1 cut(s) 223
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 6 cut(s) 201, 225, 263, 355, 717, 1167
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 113, 200, 549
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 345, 1133
CviAII CATG 4 cut(s) 284, 351, 664, 1150
CviQI GTAC 2 cut(s) 345, 1133
DdeI CTNAG 2 cut(s) 538, 1193
DpnI GATC 2 cut(s) 44, 560
DpnII GATC 2 cut(s) 42, 558
EaeI YGGCCR 3 cut(s) 223, 261, 715
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 253, 491
EarI CTCTTC 2 cut(s) 253, 491
EciI GGCGGA 1 cut(s) 536
EclXI CGGCCG 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 113, 549
Eco52I CGGCCG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 1136
EcoRII CCWGG 3 cut(s) 38, 109, 355
FaeI CATG 4 cut(s) 287, 354, 667, 1153
FaqI GGGAC 2 cut(s) 602, 1029
FatI CATG 4 cut(s) 283, 350, 663, 1149
FauI CCCGC 1 cut(s) 908
FokI GGATG 1 cut(s) 296
FspBI CTAG 1 cut(s) 461
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 6 cut(s) 201, 225, 263, 355, 717, 1167
HapII CCGG 3 cut(s) 886, 956, 1047
HgaI GACGC 1 cut(s) 461
Hin1II CATG 4 cut(s) 287, 354, 667, 1153
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 139, 360, 575, 800, 816
HpaII CCGG 3 cut(s) 886, 956, 1047
HphI GGTGA 2 cut(s) 37, 243
Hpy166II GTNNAC 2 cut(s) 859, 1091
Hpy188I TCNGA 3 cut(s) 278, 314, 805
Hpy188III TCNNGA 5 cut(s) 10, 430, 579, 928, 956
Hpy8I GTNNAC 2 cut(s) 859, 1091
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 925
HpyCH4III ACNGT 4 cut(s) 238, 480, 593, 868
HpyCH4V TGCA 7 cut(s) 71, 217, 300, 332, 401, 408, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 347, 398, 442
HpyF3I CTNAG 2 cut(s) 538, 1193
Hsp92II CATG 4 cut(s) 287, 354, 667, 1153
Kpn2I TCCGGA 1 cut(s) 955
Kzo9I GATC 2 cut(s) 42, 558
LweI GCATC 2 cut(s) 423, 1071
MaeI CTAG 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 1071
MalI GATC 2 cut(s) 44, 560
MboI GATC 2 cut(s) 42, 558
MboII GAAGA 8 cut(s) 87, 95, 240, 286, 379, 508, 1047, 1133
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 3 cut(s) 861, 940, 1206
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 6 cut(s) 13, 409, 738, 909, 984, 1095
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 6 cut(s) 179, 284, 492, 646, 790, 954
Mox20I TGGCCA 1 cut(s) 263
MroI TCCGGA 1 cut(s) 955
MroXI GAANNNNTTC 1 cut(s) 849
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 230, 1098
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 3 cut(s) 886, 956, 1047
MspR9I CCNGG 5 cut(s) 40, 111, 357, 886, 1047
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 3 cut(s) 40, 111, 357
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 4 cut(s) 338, 347, 398, 442
NciI CCSGG 2 cut(s) 886, 1047
NdeII GATC 2 cut(s) 42, 558
NlaIII CATG 4 cut(s) 287, 354, 667, 1153
NlaIV GGNNCC 2 cut(s) 202, 551
NmeAIII GCCGAG 2 cut(s) 201, 743
NspI RCATGY 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 4 cut(s) 139, 360, 575, 800
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 1045
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
PshAI GACNNNNGTC 1 cut(s) 118
Psp6I CCWGG 3 cut(s) 38, 109, 355
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 3 cut(s) 38, 109, 355
PspN4I GGNNCC 2 cut(s) 202, 551
PspPI GGNCC 3 cut(s) 113, 200, 549
PsuI RGATCY 1 cut(s) 558
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 2 cut(s) 346, 1134
RsaNI GTAC 2 cut(s) 345, 1133
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 2 cut(s) 230, 1098
Sau3AI GATC 2 cut(s) 42, 558
Sau96I GGNCC 3 cut(s) 113, 200, 549
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 5 cut(s) 40, 111, 357, 886, 1047
SduI GDGCHC 3 cut(s) 861, 940, 1206
SfaNI GCATC 2 cut(s) 423, 1071
SinI GGWCC 2 cut(s) 113, 549
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
Sse9I AATT 6 cut(s) 13, 409, 738, 909, 984, 1095
SsiI CCGC 3 cut(s) 521, 758, 915
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 5 cut(s) 38, 109, 355, 884, 1045
TaaI ACNGT 4 cut(s) 238, 480, 593, 868
TaqI TCGA 4 cut(s) 450, 669, 853, 1008
TasI AATT 6 cut(s) 13, 409, 738, 909, 984, 1095
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 4 cut(s) 139, 360, 575, 800
Tru1I TTAA 2 cut(s) 230, 1098
Tru9I TTAA 2 cut(s) 230, 1098
TspDTI ATGAA 1 cut(s) 1160
TspGWI ACGGA 1 cut(s) 1008
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 134
VneI GTGCAC 1 cut(s) 857
VpaK11BI GGWCC 2 cut(s) 113, 549
XapI RAATTY 1 cut(s) 738
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 2 cut(s) 613, 773
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.