Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000168

Physical Location & Seq

Genomic Coordinates Reverse (-)

58775302 .. 58792990

Gene Structure 17689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAAGCTTTTCAAGAATAGCAACTTCAGTCATTTTCTTCGCCAACTCTTGCCAAAAAAATCCTCCGACTTCGGTTTGCCTTGGCTTCCTGTATCAGCAAGATGGAGGAATCTTCGCACAATATTCAACTTGCAATTGTTAGGCCCCAAAGTTCTTGATGCCAACCACGACAACTGGCGCGTAAAGGTGCAAAAGCTCATGGATGATGTCAATGAAAGCATGAGGGCCAGTGAGGCAGTAGATGTCGGAAGGGCTGCTTTTACAACTGCACTCAATTTGTTGTCGCAGACTGTCTTCTCTGTGGATTTAGCTGATCCGAGTTGCCAAACAGCTAGGGAGTTCAAGGAGACTTTTTTGGGTATAATGGAAGAGGTAGGGAAACCAAACTTGGTGGACTATTTTCCTTTGCTAAGGAAGCTTGACCCACAAGGCATAAACAGGCGCGCAACGAACTACTTCCGGAAGACGATACTCATCTTTGATCGAATTATCCATCAAAGGTTGGAATCAAGAAAAGGAGGCAATTATATCACAACTAATGATATGTTGGATACACTTTTAAACATCAGTGAAGTGAAAAGAGAGGATATGGATATTCCGGATACCCAACATTTGTTTGTGCTTCATAATGAAGAAATATTGACTGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

217

Amino Acids

25.15

Weight (kDa)

7.87

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 198	1.2e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca	FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica	MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica	Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis	pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis	RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata	RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora	Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii	Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa	Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha	Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana	Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 444
AccIII	TCCGGA	2 cut(s)	459, 598
AclWI	GGATC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	13, 127, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	5 cut(s)	7, 196, 311, 332, 418
AluI	AGCT	5 cut(s)	7, 196, 311, 332, 418
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	308
Aor13HI	TCCGGA	2 cut(s)	459, 598
AoxI	GGCC	2 cut(s)	142, 225
ApeKI	GCWGC	1 cut(s)	254
Asp700I	GAANNNNTTC	2 cut(s)	8, 455
AspLEI	GCGC	3 cut(s)	180, 444, 446
AspS9I	GGNCC	2 cut(s)	143, 225
BbsI	GAAGAC	2 cut(s)	286, 470
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	96, 501
BciVI	GTATCC	2 cut(s)	544, 595
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	333
BfuI	GTATCC	2 cut(s)	544, 595
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	143, 225
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	2 cut(s)	286, 470
Bpu10I	CCTNAGC	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	459, 598
Bse1I	ACTGG	2 cut(s)	179, 228
Bse8I	GATNNNNATC	1 cut(s)	473
BseAI	TCCGGA	2 cut(s)	459, 598
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	179, 228
BsePI	GCGCGC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	2 cut(s)	180, 444
BshFI	GGCC	2 cut(s)	144, 227
BsiSI	CCGG	2 cut(s)	460, 599
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	144, 227
Bsp13I	TCCGGA	2 cut(s)	459, 598
Bsp143I	GATC	2 cut(s)	313, 481
BspANI	GGCC	2 cut(s)	144, 227
BspEI	TCCGGA	2 cut(s)	459, 598
BspFNI	CGCG	2 cut(s)	180, 444
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	179, 228
BssECI	CCNNGG	1 cut(s)	80
BssHII	GCGCGC	1 cut(s)	442
BssMI	GATC	2 cut(s)	313, 481
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	292, 646
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	180, 444
BstHHI	GCGC	3 cut(s)	180, 444, 446
BstKTI	GATC	2 cut(s)	316, 484
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	313, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 415
BstUI	CGCG	2 cut(s)	180, 444
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	286, 470
BsuI	GTATCC	2 cut(s)	544, 595
BsuRI	GGCC	2 cut(s)	144, 227
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	235, 574
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	3 cut(s)	180, 444, 446
Cfr13I	GGNCC	2 cut(s)	143, 225
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	199, 220
CviJI	RGCY	9 cut(s)	7, 85, 144, 196, 227, 254, 311, 332, 418
CviKI_1	RGCY	9 cut(s)	7, 85, 144, 196, 227, 254, 311, 332, 418
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	2 cut(s)	315, 483
DpnII	GATC	2 cut(s)	313, 481
DraI	TTTAAA	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	202, 223
FaiI	YATR	8 cut(s)	200, 221, 362, 434, 528, 545, 590, 627
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	2 cut(s)	198, 219
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	3 cut(s)	179, 443, 445
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	144, 227
HapII	CCGG	2 cut(s)	460, 599
HhaI	GCGC	3 cut(s)	180, 444, 446
Hin1II	CATG	2 cut(s)	202, 223
Hin6I	GCGC	3 cut(s)	178, 442, 444
HinP1I	GCGC	3 cut(s)	178, 442, 444
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	5, 416
HinfI	GANTC	2 cut(s)	109, 506
HpaII	CCGG	2 cut(s)	460, 599
Hpy166II	GTNNAC	2 cut(s)	394, 649
Hpy188I	TCNGA	3 cut(s)	67, 248, 318
Hpy188III	TCNNGA	5 cut(s)	13, 155, 460, 510, 599
Hpy8I	GTNNAC	2 cut(s)	394, 649
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	292, 646
HpyCH4V	TGCA	3 cut(s)	133, 190, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 415
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	202, 223
HspAI	GCGC	3 cut(s)	178, 442, 444
Kpn2I	TCCGGA	2 cut(s)	459, 598
Kzo9I	GATC	2 cut(s)	313, 481
LpnPI	CCDG	6 cut(s)	102, 160, 241, 424, 473, 612
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	333
MalI	GATC	2 cut(s)	315, 483
MboI	GATC	2 cut(s)	313, 481
MboII	GAAGA	6 cut(s)	29, 104, 286, 380, 475, 644
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	4 cut(s)	134, 274, 486, 523
MmeI	TCCRAC	4 cut(s)	90, 226, 483, 528
MnlI	CCTC	7 cut(s)	73, 99, 216, 226, 364, 512, 577
MroI	TCCGGA	2 cut(s)	459, 598
MroXI	GAANNNNTTC	2 cut(s)	8, 455
MseI	TTAA	1 cut(s)	560
MspI	CCGG	2 cut(s)	460, 599
MunI	CAATTG	1 cut(s)	134
MvnI	CGCG	2 cut(s)	180, 444
MwoI	GCNNNNNNNGC	2 cut(s)	233, 415
NdeII	GATC	2 cut(s)	313, 481
NlaIII	CATG	2 cut(s)	202, 223
NlaIV	GGNNCC	1 cut(s)	145
PauI	GCGCGC	1 cut(s)	442
PdmI	GAANNNNTTC	2 cut(s)	8, 455
PfeI	GAWTC	2 cut(s)	109, 506
PkrI	GCNGC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	143, 225
PteI	GCGCGC	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	560
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	313, 481
Sau96I	GGNCC	2 cut(s)	143, 225
SetI	ASST	8 cut(s)	9, 189, 198, 313, 334, 375, 420, 503
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	4 cut(s)	134, 274, 486, 523
SspI	AATATT	2 cut(s)	123, 639
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	292, 646
TaqI	TCGA	1 cut(s)	484
TasI	AATT	4 cut(s)	134, 274, 486, 523
TfiI	GAWTC	2 cut(s)	109, 506
Tru1I	TTAA	1 cut(s)	560
Tru9I	TTAA	1 cut(s)	560
TscAI	CASTG	2 cut(s)	235, 574
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	17, 228, 614, 645
TspRI	CASTG	2 cut(s)	235, 574
XmnI	GAANNNNTTC	2 cut(s)	8, 455
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.