Rh4AG301700

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000168
Physical Location & Seq
Forward (+)
61450818 .. 61453328
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG301700.1

Sequence Viewer

Length: 1026 bp
ATGGTAAAGGGTTTGGCAGTAGATATTGGAAAGGCTGCTTTCAAAACTACACTCAATTTGCTGTCGACAACTATTTTCTCGGTGGATTTGGCTGATGACACGAGTAGTGGTAGTGAGATGACTAGAGAATTCAAGAAGATTGTTAATGGTGTCATGGAAGAGGCTGGGAAGCCGAATTTGGGGGACTATTTTCCAGTGCTTAGGAAGATTGATCCCCAAGGCATAAGGCGGCGCTTTATGAATTACTTCAACAAGATGTTAGGCTTGATTGAATCAGGGATCAGTCAAAGGTTGGAATGTAGAAAAGGGGATGATTATGTAACAAGTAATGATATGTTGGATACTCTTATAAACCTCGGTGAAGAGAAAAATGAGGTGGATTTGAAGAACTCCGAAGTTGTTGAACATTTGTTTGTGGCTCTATTCGTTGCGGGGACAGATACAACTTCAGCTACATTGGAATGGGCAATGGCGGAGCTACTACACAACCCAGAGAGCCTTTCTAAAGCTCAAGAAGAGCTAGATCAAATGGTTGGAAAAGGAAAACCAATCGAGCAATCCGACATTGCCAGACTCCCTTACTTACAAACAATAATCATGGAAACCTTGCGGTTGCACCCAGCGGGTCCATTGCTACTGCCACGAAAAGCTGAAACAGATGTAGAAATCGGGGGCTACATTGTCCCGAAGGGTGCACAAGTTCTAGTTAATGTTTGGGCCATAGGCCGAGACGCCGACATTTGGGACAGTCCAAACTCTTTTATGCCAGAGAGGTTCTTAGGATTACACAACCAAATTGATGCTATGGGAAAAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGAATATGTCCAGGTTTGCCATTGGCAATGAGAATGTTGCACTTGATGTTGGGTTCACTCATCAACTGCTTTGATTGGAAGCTTGAAGATGGGGTTGTACCTGAGACGATGAACATGGAAGACAGGTTTGACCTCACTTTACAAATGGCTCAGCCTCTCAAAGCTGTTCCCTACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

4.96

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 322 2.1e-77 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 836
AccI GTMKAC 1 cut(s) 65
AciI CCGC 5 cut(s) 229, 431, 473, 610, 623
AclWI GGATC 2 cut(s) 206, 287
AcsI RAATTY 2 cut(s) 128, 175
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 179, 741, 836
AgsI TTSAA 7 cut(s) 43, 133, 250, 272, 385, 404, 932
AjnI CCWGG 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 8 cut(s) 452, 478, 509, 520, 650, 823, 928, 1010
AluI AGCT 8 cut(s) 452, 478, 509, 520, 650, 823, 928, 1010
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 723, 944
Alw44I GTGCAC 1 cut(s) 693
AlwI GGATC 2 cut(s) 206, 287
AoxI GGCC 2 cut(s) 717, 724
ApaLI GTGCAC 1 cut(s) 693
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 128, 175
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 626, 717
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 697
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 929
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 723, 944
BfaI CTAG 3 cut(s) 123, 521, 704
BfoI RGCGCY 1 cut(s) 235
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 2 cut(s) 36, 230
BlpI GCTNAGC 1 cut(s) 996
BlsI GCNGC 2 cut(s) 37, 231
Bme1390I CCNGG 1 cut(s) 858
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 626, 717
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 1 cut(s) 790
BpiI GAAGAC 1 cut(s) 972
Bpu10I CCTNAGC 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 217, 355
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 741, 836
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 4 cut(s) 474, 564, 629, 879
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 2 cut(s) 217, 355
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 179, 741, 836
BseMI GCAATG 4 cut(s) 474, 564, 629, 879
BseMII CTCAG 2 cut(s) 939, 1010
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 859
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 2 cut(s) 164, 619
BshFI GGCC 2 cut(s) 719, 726
BsiHKAI GWGCWC 1 cut(s) 697
BslFI GGGAC 4 cut(s) 197, 448, 668, 758
BslI CCNNNNNNNGG 3 cut(s) 179, 741, 836
BsmAI GTCTC 2 cut(s) 723, 944
BsmBI CGTCTC 2 cut(s) 723, 944
BsmFI GGGAC 4 cut(s) 197, 448, 668, 758
BsnI GGCC 2 cut(s) 719, 726
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 211, 279, 523
Bsp1720I GCTNAGC 1 cut(s) 996
BspACI CCGC 5 cut(s) 229, 431, 473, 610, 623
BspANI GGCC 2 cut(s) 719, 726
BspCNI CTCAG 2 cut(s) 940, 1009
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 2 cut(s) 206, 287
BspQI GCTCTTC 1 cut(s) 510
BsrDI GCAATG 4 cut(s) 474, 564, 629, 879
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 217, 355
BssMI GATC 3 cut(s) 211, 279, 523
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 3 cut(s) 153, 357, 510
BstACI GRCGYC 1 cut(s) 732
BstDEI CTNAG 4 cut(s) 200, 778, 948, 996
BstF5I GGATG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 214, 282, 526
BstMAI GTCTC 2 cut(s) 723, 944
BstMBI GATC 3 cut(s) 211, 279, 523
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 856
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 972
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 2 cut(s) 719, 726
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 626, 717
CseI GACGC 1 cut(s) 740
Csp6I GTAC 1 cut(s) 944
CviAII CATG 3 cut(s) 154, 598, 961
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 4 cut(s) 200, 778, 948, 996
DpnI GATC 3 cut(s) 213, 281, 525
DpnII GATC 3 cut(s) 211, 279, 523
Eam1104I CTCTTC 3 cut(s) 153, 357, 510
EarI CTCTTC 3 cut(s) 153, 357, 510
EciI GGCGGA 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 2 cut(s) 723, 944
FaeI CATG 3 cut(s) 157, 601, 964
FaqI GGGAC 4 cut(s) 197, 448, 668, 758
FatI CATG 3 cut(s) 153, 597, 960
FauI CCCGC 2 cut(s) 424, 616
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 36, 230
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 36, 230
FspBI CTAG 3 cut(s) 123, 521, 704
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 36, 230
GsaI CCCAGC 2 cut(s) 168, 623
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 2 cut(s) 719, 726
HgaI GACGC 1 cut(s) 740
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 3 cut(s) 157, 601, 964
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 2 cut(s) 272, 573
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 66, 695, 902
Hpy188I TCNGA 2 cut(s) 394, 562
Hpy188III TCNNGA 3 cut(s) 133, 512, 685
Hpy8I GTNNAC 3 cut(s) 66, 695, 902
HpyAV CCTTC 1 cut(s) 682
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4V TGCA 3 cut(s) 616, 695, 886
HpyF3I CTNAG 4 cut(s) 200, 778, 948, 996
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 3 cut(s) 157, 601, 964
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 3 cut(s) 211, 279, 523
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 475
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 790
MaeI CTAG 3 cut(s) 123, 521, 704
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 213, 281, 525
MboI GATC 3 cut(s) 211, 279, 523
MboII GAAGA 8 cut(s) 148, 170, 217, 374, 397, 527, 944, 977
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 5 cut(s) 55, 128, 175, 241, 795
MlyI GAGTC 1 cut(s) 567
MmeI TCCRAC 4 cut(s) 273, 318, 514, 585
MnlI CCTC 7 cut(s) 154, 365, 367, 765, 837, 989, 1011
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 144, 708
MslI CAYNNNNRTG 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
NdeII GATC 3 cut(s) 211, 279, 523
NlaIII CATG 3 cut(s) 157, 601, 964
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 1 cut(s) 752
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 2 cut(s) 37, 231
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PsiI TTATAA 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 2 cut(s) 164, 619
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 2 cut(s) 626, 717
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 1 cut(s) 460
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 144, 708
SatI GCNGC 2 cut(s) 36, 230
Sau3AI GATC 3 cut(s) 211, 279, 523
Sau96I GGNCC 2 cut(s) 626, 717
SchI GAGTC 1 cut(s) 567
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 1 cut(s) 790
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 5 cut(s) 55, 128, 175, 241, 795
SsiI CCGC 5 cut(s) 229, 431, 473, 610, 623
SspMI CTAG 3 cut(s) 123, 521, 704
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 749
TaqI TCGA 2 cut(s) 65, 552
TasI AATT 5 cut(s) 55, 128, 175, 241, 795
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 144, 708
Tru9I TTAA 2 cut(s) 144, 708
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 254, 971
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 836
VneI GTGCAC 1 cut(s) 693
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 2 cut(s) 128, 175
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 3 cut(s) 123, 521, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.